Wall clock time and date at job start Tue Mar 31 2020 19:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47131 * 2 1 4 4 C 1.53000 * 109.46822 * 119.99222 * 2 1 3 5 5 C 1.53001 * 109.46939 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47175 * 300.00170 * 5 4 2 7 7 C 1.52999 * 109.46805 * 59.99982 * 6 5 4 8 8 H 1.09007 * 109.46997 * 179.97438 * 7 6 5 9 9 C 1.50709 * 109.47330 * 60.00083 * 7 6 5 10 10 O 1.21285 * 119.99766 * 250.08562 * 9 7 6 11 11 N 1.34770 * 120.00025 * 70.07791 * 9 7 6 12 12 C 1.47085 * 120.88171 * 175.56398 * 11 9 7 13 13 C 1.53240 * 108.52263 * 231.21186 * 12 11 9 14 14 N 1.46899 * 109.33745 * 306.17012 * 13 12 11 15 15 C 1.46901 * 111.00000 * 187.25740 * 14 13 12 16 16 C 1.53943 * 113.73979 * 271.67278 * 15 14 13 17 17 N 1.47586 * 86.11822 * 222.04587 * 16 15 14 18 18 C 1.36933 * 134.48915 * 204.63897 * 17 16 15 19 19 H 1.08003 * 119.99168 * 179.97438 * 18 17 16 20 20 C 1.38806 * 120.00458 * 0.02562 * 18 17 16 21 21 N 1.31619 * 120.00151 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47558 * 59.99708 * 22 20 18 24 24 H 1.48500 * 109.47054 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46810 * 299.99506 * 22 20 18 26 26 C 1.47580 * 91.01129 * 24.64265 * 17 16 15 27 27 C 1.46900 * 111.27369 * 63.10467 * 14 13 12 28 28 C 1.47084 * 120.88240 * 355.59113 * 11 9 7 29 29 C 1.52997 * 109.46819 * 239.99493 * 2 1 3 30 30 H 1.08996 * 109.47179 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46833 * 300.00175 * 1 2 3 32 32 H 1.08997 * 109.46995 * 60.00591 * 1 2 3 33 33 H 1.08995 * 109.47638 * 299.99912 * 4 2 1 34 34 H 1.09009 * 109.47199 * 60.00361 * 4 2 1 35 35 H 1.08996 * 109.46917 * 60.00312 * 5 4 2 36 36 H 1.08997 * 109.47112 * 180.02562 * 5 4 2 37 37 H 1.08996 * 109.47314 * 299.99899 * 6 5 4 38 38 H 1.09005 * 109.46929 * 179.97438 * 6 5 4 39 39 H 1.08995 * 109.62982 * 111.49968 * 12 11 9 40 40 H 1.08997 * 109.62270 * 350.91979 * 12 11 9 41 41 H 1.08993 * 109.49084 * 186.21451 * 13 12 11 42 42 H 1.08993 * 109.49381 * 66.12619 * 13 12 11 43 43 H 1.08999 * 112.94704 * 43.40155 * 15 14 13 44 44 H 1.09005 * 113.76861 * 336.34965 * 16 15 14 45 45 H 1.09002 * 113.77328 * 107.74369 * 16 15 14 46 46 H 0.96994 * 119.99921 * 180.02562 * 21 20 18 47 47 H 1.09001 * 113.76323 * 221.06265 * 26 17 16 48 48 H 1.08988 * 113.77182 * 89.66253 * 26 17 16 49 49 H 1.09000 * 109.48863 * 56.85321 * 27 14 13 50 50 H 1.08999 * 109.49267 * 176.93253 * 27 14 13 51 51 H 1.09003 * 109.62757 * 248.50036 * 28 11 9 52 52 H 1.08997 * 109.62672 * 9.07838 * 28 11 9 53 53 H 1.08997 * 109.47405 * 60.00167 * 29 2 1 54 54 H 1.09000 * 109.47403 * 299.99481 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5700 -0.7217 1.2491 6 6 4.0795 -1.4434 -0.0001 7 6 3.5695 -0.7223 -1.2494 8 1 3.9329 -1.2362 -2.1394 9 6 4.0724 0.6985 -1.2498 10 8 3.2999 1.6152 -1.0659 11 7 5.3805 0.9502 -1.4544 12 6 5.8767 2.3311 -1.5553 13 6 6.7155 2.4550 -2.8318 14 7 7.7571 1.4190 -2.8318 15 6 8.6889 1.6094 -3.9514 16 6 8.2499 0.9076 -5.2493 17 7 9.6653 0.5169 -5.3983 18 6 10.4618 0.1830 -6.4608 19 1 11.4990 -0.0713 -6.2992 20 6 9.9367 0.1723 -7.7457 21 7 8.6729 0.4827 -7.9427 22 14 11.0233 -0.2839 -9.1950 23 1 11.5441 -1.6620 -9.0089 24 1 10.2293 -0.2204 -10.4483 25 1 12.1602 0.6676 -9.2801 26 6 9.8771 0.6306 -3.9422 27 6 7.1698 0.0728 -2.8587 28 6 6.3496 -0.1487 -1.5834 29 6 2.0400 -0.7214 -1.2492 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6767 -0.2072 2.1393 34 1 1.6767 -1.7489 1.2495 35 1 3.9337 0.3058 1.2488 36 1 3.9333 -1.2358 2.1389 37 1 3.7159 -2.4709 0.0002 38 1 5.1696 -1.4434 -0.0005 39 1 6.4942 2.5626 -0.6875 40 1 5.0338 3.0205 -1.6028 41 1 7.1818 3.4395 -2.8664 42 1 6.0735 2.3251 -3.7029 43 1 8.9792 2.6508 -4.0903 44 1 7.5764 0.0658 -5.0874 45 1 7.8993 1.5919 -6.0219 46 1 8.3059 0.4749 -8.8405 47 1 10.8258 1.0939 -3.6712 48 1 9.6817 -0.2923 -3.3964 49 1 6.5214 -0.0238 -3.7295 50 1 7.9656 -0.6701 -2.9130 51 1 7.0126 -0.1556 -0.7182 52 1 5.8193 -1.0986 -1.6494 53 1 1.6767 -0.2076 -2.1392 54 1 1.6767 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941540590.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:29 Heat of formation + Delta-G solvation = 5.801507 kcal Electronic energy + Delta-G solvation = -30859.137476 eV Core-core repulsion = 27024.601503 eV Total energy + Delta-G solvation = -3834.535973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.91467 -40.67853 -38.75680 -37.64305 -35.32312 -34.06641 -33.34798 -32.30531 -31.64277 -29.74009 -27.84211 -27.24984 -26.61937 -25.07296 -24.72238 -23.96573 -22.79109 -21.88083 -21.16256 -20.48620 -19.35880 -18.74054 -17.99214 -16.98029 -16.94677 -16.80244 -16.49708 -16.18609 -15.91647 -15.69365 -15.56396 -15.20333 -14.94402 -14.81522 -14.44816 -14.11236 -13.80371 -13.72626 -13.47015 -13.39488 -13.23773 -13.18197 -13.00217 -12.93345 -12.81944 -12.66866 -12.56497 -12.34615 -12.28278 -12.17825 -12.01286 -11.86870 -11.77754 -11.74006 -11.48420 -11.38886 -10.96510 -10.90059 -10.84543 -10.25422 -9.71592 -9.24139 -8.86464 -7.91723 -5.25874 1.43845 1.47263 1.53371 1.66183 2.00126 2.44486 2.84639 3.28384 3.46296 3.49320 3.76154 3.79847 3.85530 3.89560 3.99596 4.02646 4.16777 4.24804 4.26673 4.29013 4.36989 4.46637 4.47371 4.50589 4.56147 4.66314 4.67442 4.71863 4.73878 4.80862 4.84634 4.87447 4.94242 4.95408 4.98232 4.99539 5.09424 5.09645 5.10002 5.18498 5.21599 5.34507 5.35545 5.37407 5.42208 5.47016 5.50113 5.53958 5.77843 5.89935 6.06078 6.13563 6.47660 6.89477 7.23171 7.59320 8.54636 9.24133 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.002469 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.003970 B =11335.863183 C =11657.042677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 H 0.079 0.921 4 C -0.108 4.108 5 C -0.120 4.120 6 C -0.110 4.110 7 C -0.109 4.109 8 H 0.103 0.897 9 C 0.519 3.481 10 O -0.571 6.571 11 N -0.613 5.613 12 C 0.125 3.875 13 C 0.045 3.955 14 N -0.515 5.515 15 C 0.063 3.937 16 C 0.134 3.866 17 N -0.640 5.640 18 C -0.232 4.232 19 H 0.086 0.914 20 C -0.070 4.070 21 N -0.956 5.956 22 Si 0.979 3.021 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.275 1.275 26 C 0.131 3.869 27 C 0.036 3.964 28 C 0.117 3.883 29 C -0.091 4.091 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.016 0.984 43 H 0.100 0.900 44 H 0.024 0.976 45 H 0.026 0.974 46 H 0.247 0.753 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.022 0.978 50 H 0.090 0.910 51 H 0.095 0.905 52 H 0.112 0.888 53 H 0.045 0.955 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.469 -3.888 20.893 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 H 0.097 0.903 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.148 4.148 7 C -0.130 4.130 8 H 0.121 0.879 9 C 0.309 3.691 10 O -0.451 6.451 11 N -0.346 5.346 12 C 0.002 3.998 13 C -0.083 4.083 14 N -0.238 5.238 15 C -0.046 4.046 16 C 0.007 3.993 17 N -0.367 5.367 18 C -0.360 4.360 19 H 0.104 0.896 20 C -0.263 4.263 21 N -0.605 5.605 22 Si 0.807 3.193 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.201 1.201 26 C 0.007 3.993 27 C -0.092 4.092 28 C -0.005 4.005 29 C -0.128 4.128 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.034 0.966 43 H 0.118 0.882 44 H 0.041 0.959 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.041 0.959 50 H 0.108 0.892 51 H 0.113 0.887 52 H 0.130 0.870 53 H 0.064 0.936 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.518 -3.407 21.126 24.302 hybrid contribution -0.020 -0.026 -2.373 2.373 sum -11.537 -3.433 18.753 22.284 Atomic orbital electron populations 1.21769 0.95204 1.01785 1.01085 1.21484 0.95573 1.01523 0.94588 0.90302 1.21549 0.95192 1.00789 0.97002 1.21529 0.96105 0.99699 0.98376 1.21697 1.01486 0.99962 0.91621 1.21433 0.97941 0.91790 1.01839 0.87914 1.21134 0.81049 0.92323 0.74560 1.90548 1.55389 1.48251 1.50918 1.48318 1.07278 1.07877 1.71110 1.21611 0.97478 0.83236 0.97478 1.22445 0.92741 0.96633 0.96519 1.62071 1.16759 1.02725 1.42290 1.23848 0.93618 0.99333 0.87818 1.22818 0.86883 0.95237 0.94394 1.46147 1.07906 1.80612 1.02083 1.19390 0.92845 1.38337 0.85448 0.89600 1.25653 0.97653 1.02926 1.00038 1.70025 1.13972 1.55957 1.20586 0.85137 0.77577 0.78424 0.78131 1.20151 1.22298 1.20076 1.22780 0.96732 0.96261 0.83575 1.22615 0.98107 0.91572 0.96932 1.22137 0.90705 0.90071 0.97580 1.21366 0.92240 1.01244 0.97985 0.91965 0.92821 0.93844 0.92462 0.90899 0.94330 0.90293 0.88669 0.89988 0.89502 0.89900 0.88491 0.96588 0.88203 0.95858 0.95552 0.94464 0.92439 0.92766 0.95950 0.89218 0.88688 0.87034 0.93627 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.19 71.98 0.66 -1.75 16 2 C -0.11 -2.21 2.43 -10.79 -0.03 -2.24 16 3 H 0.08 2.09 5.17 -2.39 -0.01 2.08 16 4 C -0.11 -1.66 5.20 30.59 0.16 -1.51 16 5 C -0.12 -1.80 5.70 30.60 0.17 -1.63 16 6 C -0.11 -1.44 5.07 30.59 0.16 -1.28 16 7 C -0.11 -1.96 2.16 -11.55 -0.02 -1.99 16 8 H 0.10 1.69 7.33 -2.38 -0.02 1.67 16 9 C 0.52 12.65 5.60 87.66 0.49 13.14 16 10 O -0.57 -17.58 12.82 -3.04 -0.04 -17.62 16 11 N -0.61 -13.95 3.01 -817.92 -2.46 -16.41 16 12 C 0.12 2.93 6.58 86.35 0.57 3.49 16 13 C 0.05 1.21 5.61 86.38 0.48 1.69 16 14 N -0.51 -14.66 4.75 -876.00 -4.16 -18.82 16 15 C 0.06 2.28 4.06 46.67 0.19 2.47 16 16 C 0.13 6.32 6.77 86.48 0.59 6.91 16 17 N -0.64 -32.57 3.70 -717.27 -2.65 -35.23 16 18 C -0.23 -12.98 10.70 84.03 0.90 -12.08 16 19 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 20 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 21 N -0.96 -58.49 11.38 21.65 0.25 -58.25 16 22 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 26 C 0.13 5.06 8.42 86.48 0.73 5.79 16 27 C 0.04 0.97 4.39 86.38 0.38 1.35 16 28 C 0.12 2.24 5.30 86.35 0.46 2.70 16 29 C -0.09 -1.69 4.45 30.58 0.14 -1.55 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.04 0.77 7.22 -2.39 -0.02 0.75 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.93 5.72 -2.38 -0.01 0.92 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 40 H 0.08 2.11 7.09 -2.39 -0.02 2.10 16 41 H 0.10 2.34 8.02 -2.39 -0.02 2.32 16 42 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.10 3.61 8.01 -2.39 -0.02 3.59 16 44 H 0.02 1.14 5.61 -2.38 -0.01 1.13 16 45 H 0.03 1.45 7.15 -2.39 -0.02 1.43 16 46 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 47 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.05 1.93 6.35 -2.39 -0.02 1.92 16 49 H 0.02 0.72 6.49 -2.39 -0.02 0.70 16 50 H 0.09 2.45 6.16 -2.39 -0.01 2.43 16 51 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 52 H 0.11 1.65 4.76 -2.39 -0.01 1.63 16 53 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 54 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -70.15 390.76 0.32 -69.84 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.87 Total: 18.69 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 6.49 Total: 9.96 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -9.03 Total: -128.71 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.04 Total: -17.62 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -70.15 0.32 -69.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941540590.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.637 kcal (2) G-P(sol) polarization free energy of solvation -70.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds