Wall clock time and date at job start Tue Mar 31 2020 19:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46928 * 2 1 4 4 C 1.52996 * 109.47379 * 239.99549 * 2 1 3 5 5 C 1.52999 * 109.47379 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46947 * 59.99826 * 5 4 2 7 7 C 1.52996 * 109.47223 * 300.00270 * 6 5 4 8 8 C 1.52999 * 109.47379 * 59.99995 * 7 6 5 9 9 H 1.09002 * 109.46928 * 59.99549 * 8 7 6 10 10 C 1.50699 * 109.47104 * 179.97438 * 8 7 6 11 11 O 1.21284 * 119.99614 * 94.96978 * 10 8 7 12 12 N 1.34776 * 120.00204 * 274.96735 * 10 8 7 13 13 C 1.47081 * 120.87942 * 354.88297 * 12 10 8 14 14 C 1.53696 * 108.27337 * 128.75351 * 13 12 10 15 15 N 1.46903 * 109.25578 * 54.08216 * 14 13 12 16 16 C 1.46898 * 110.99690 * 172.60433 * 15 14 13 17 17 C 1.53947 * 113.74396 * 38.04753 * 16 15 14 18 18 N 1.47816 * 86.03570 * 222.08203 * 17 16 15 19 19 C 1.36938 * 134.45566 * 204.64760 * 18 17 16 20 20 H 1.07997 * 119.99674 * 184.81886 * 19 18 17 21 21 C 1.38806 * 120.00040 * 4.81229 * 19 18 17 22 22 N 1.31623 * 119.99945 * 354.93952 * 21 19 18 23 23 Si 1.86798 * 120.00062 * 174.94053 * 21 19 18 24 24 H 1.48497 * 109.47379 * 95.00216 * 23 21 19 25 25 H 1.48502 * 109.47214 * 215.00059 * 23 21 19 26 26 H 1.48493 * 109.46973 * 334.99687 * 23 21 19 27 27 C 1.47586 * 91.05285 * 24.54633 * 18 17 16 28 28 C 1.46896 * 111.27211 * 296.75313 * 15 14 13 29 29 C 1.47079 * 120.87962 * 175.16199 * 12 10 8 30 30 H 1.08998 * 109.47461 * 300.00203 * 1 2 3 31 31 H 1.09002 * 109.46604 * 59.99978 * 1 2 3 32 32 H 1.08994 * 109.47188 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47124 * 300.00240 * 4 2 1 34 34 H 1.09002 * 109.46867 * 60.00633 * 4 2 1 35 35 H 1.08998 * 109.47461 * 180.02562 * 5 4 2 36 36 H 1.09006 * 109.47385 * 300.00607 * 5 4 2 37 37 H 1.09002 * 109.46797 * 60.00544 * 6 5 4 38 38 H 1.09008 * 109.47033 * 179.97438 * 6 5 4 39 39 H 1.08994 * 109.47124 * 299.99755 * 7 6 5 40 40 H 1.09006 * 109.47243 * 180.02562 * 7 6 5 41 41 H 1.09002 * 109.62504 * 248.51864 * 13 12 10 42 42 H 1.08994 * 109.62793 * 9.09886 * 13 12 10 43 43 H 1.08997 * 109.65148 * 294.08225 * 14 13 12 44 44 H 1.09005 * 109.44364 * 173.95887 * 14 13 12 45 45 H 1.09002 * 112.94044 * 169.63822 * 16 15 14 46 46 H 1.09000 * 113.76720 * 336.34380 * 17 16 15 47 47 H 1.08999 * 113.77026 * 107.74243 * 17 16 15 48 48 H 0.96999 * 119.99741 * 180.02562 * 22 21 19 49 49 H 1.08993 * 113.76921 * 221.15718 * 27 18 17 50 50 H 1.08996 * 113.86938 * 89.76855 * 27 18 17 51 51 H 1.09000 * 109.49359 * 303.14686 * 28 15 14 52 52 H 1.08994 * 109.51651 * 183.07278 * 28 15 14 53 53 H 1.09001 * 109.63067 * 350.90078 * 29 12 10 54 54 H 1.08997 * 109.62628 * 111.47885 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7208 -1.2495 6 6 4.0805 -1.4415 -0.0001 7 6 3.5705 -0.7202 1.2490 8 6 2.0405 -0.7208 1.2494 9 1 1.6776 -1.7486 1.2496 10 6 1.5382 -0.0108 2.4801 11 8 1.2498 1.1660 2.4260 12 7 1.4093 -0.6836 3.6408 13 6 1.6459 -2.1339 3.7029 14 6 2.6320 -2.4127 4.8484 15 7 2.1171 -1.8142 6.0873 16 6 2.9380 -2.2046 7.2412 17 6 4.4452 -2.2723 6.9352 18 7 4.4476 -3.5148 7.7360 19 6 5.3992 -4.1949 8.4482 20 1 5.1596 -5.1477 8.8966 21 6 6.6717 -3.6598 8.5936 22 7 6.9942 -2.5490 7.9653 23 14 7.9264 -4.5160 9.6807 24 1 8.7795 -5.4022 8.8489 25 1 8.7756 -3.4993 10.3519 26 1 7.2217 -5.3270 10.7058 27 6 3.0129 -3.7263 7.4622 28 6 2.0273 -0.3522 5.9757 29 6 1.0224 0.0121 4.8775 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6767 -1.7489 -1.2491 34 1 1.6768 -0.2075 -2.1392 35 1 3.9334 -1.2342 -2.1396 36 1 3.9331 0.3071 -1.2497 37 1 3.7176 -2.4693 0.0001 38 1 5.1706 -1.4415 -0.0005 39 1 3.9334 0.3075 1.2488 40 1 3.9345 -1.2334 2.1391 41 1 0.7049 -2.6506 3.8918 42 1 2.0719 -2.4761 2.7598 43 1 3.6027 -1.9777 4.6105 44 1 2.7385 -3.4893 4.9815 45 1 2.6982 -1.6415 8.1432 46 1 4.6728 -2.4289 5.8808 47 1 5.0207 -1.4605 7.3799 48 1 7.8836 -2.1753 8.0667 49 1 2.4471 -4.0731 8.3268 50 1 2.8170 -4.3109 6.5634 51 1 3.0064 0.0540 5.7220 52 1 1.6950 0.0658 6.9259 53 1 1.0360 1.0893 4.7114 54 1 0.0227 -0.3024 5.1771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941540668.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:31 Heat of formation + Delta-G solvation = -1.543964 kcal Electronic energy + Delta-G solvation = -30940.623025 eV Core-core repulsion = 27105.768529 eV Total energy + Delta-G solvation = -3834.854496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.79908 -40.61949 -38.91006 -37.80587 -35.21643 -33.85519 -33.48102 -32.61982 -31.56797 -29.73617 -28.01344 -27.22155 -26.61703 -25.03642 -24.65447 -24.00394 -22.72874 -21.95745 -20.96629 -20.42855 -19.47368 -18.74037 -18.25569 -17.29288 -16.94826 -16.72570 -16.35969 -16.17225 -15.82460 -15.61048 -15.49715 -15.38360 -15.03028 -14.92287 -14.62085 -14.07790 -13.85581 -13.71641 -13.56806 -13.40842 -13.36114 -13.15253 -13.09182 -12.85074 -12.79241 -12.65334 -12.46758 -12.28279 -12.25112 -12.18595 -12.07320 -11.85718 -11.74974 -11.73637 -11.43175 -11.41930 -11.32158 -11.00870 -10.81313 -10.51013 -9.77069 -9.25512 -8.85697 -7.92006 -5.25738 1.43988 1.45560 1.55028 1.59004 1.96978 2.44102 2.84022 3.28775 3.41808 3.47924 3.62747 3.75750 3.84823 3.86545 3.98602 4.07250 4.16132 4.19847 4.23237 4.25202 4.33750 4.44151 4.45800 4.48142 4.52245 4.54545 4.57454 4.67141 4.72066 4.76525 4.79874 4.86990 4.89010 4.93949 4.98930 4.99233 5.03018 5.10177 5.16415 5.19019 5.22847 5.30750 5.33919 5.35909 5.37608 5.43014 5.46516 5.50615 5.59212 5.90108 6.05842 6.12601 6.42212 6.89296 7.15764 7.59351 8.54822 9.23954 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.002820 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.980071 B = 9926.029063 C =10981.735652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.071 4.071 3 H 0.055 0.945 4 C -0.107 4.107 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.107 4.107 8 C -0.096 4.096 9 H 0.114 0.886 10 C 0.518 3.482 11 O -0.581 6.581 12 N -0.614 5.614 13 C 0.117 3.883 14 C 0.038 3.962 15 N -0.515 5.515 16 C 0.064 3.936 17 C 0.131 3.869 18 N -0.639 5.639 19 C -0.231 4.231 20 H 0.086 0.914 21 C -0.068 4.068 22 N -0.954 5.954 23 Si 0.978 3.022 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.265 1.265 27 C 0.131 3.869 28 C 0.046 3.954 29 C 0.124 3.876 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.023 0.977 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.023 0.977 47 H 0.029 0.971 48 H 0.246 0.754 49 H 0.057 0.943 50 H 0.055 0.945 51 H 0.015 0.985 52 H 0.097 0.903 53 H 0.082 0.918 54 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.234 1.603 -18.017 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.090 4.090 3 H 0.073 0.927 4 C -0.145 4.145 5 C -0.158 4.158 6 C -0.151 4.151 7 C -0.145 4.145 8 C -0.117 4.117 9 H 0.132 0.868 10 C 0.308 3.692 11 O -0.461 6.461 12 N -0.346 5.346 13 C -0.005 4.005 14 C -0.091 4.091 15 N -0.238 5.238 16 C -0.045 4.045 17 C 0.004 3.996 18 N -0.366 5.366 19 C -0.360 4.360 20 H 0.103 0.897 21 C -0.261 4.261 22 N -0.604 5.604 23 Si 0.806 3.194 24 H -0.214 1.214 25 H -0.223 1.223 26 H -0.190 1.190 27 C 0.006 3.994 28 C -0.083 4.083 29 C 0.001 3.999 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.127 0.873 43 H 0.042 0.958 44 H 0.109 0.891 45 H 0.118 0.882 46 H 0.040 0.960 47 H 0.047 0.953 48 H 0.055 0.945 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.034 0.966 52 H 0.116 0.884 53 H 0.100 0.900 54 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.596 1.976 -17.812 23.113 hybrid contribution 2.193 0.313 0.855 2.374 sum -12.402 2.288 -16.958 21.133 Atomic orbital electron populations 1.21834 0.94752 1.02158 1.01605 1.20927 0.95899 0.98918 0.93257 0.92664 1.21579 0.95298 1.01223 0.96359 1.21569 0.95763 1.00513 0.97987 1.21518 1.00617 0.99840 0.93161 1.21452 0.92476 1.00952 0.99640 1.21468 0.97082 1.01365 0.91783 0.86798 1.21161 0.76173 0.86779 0.85060 1.90637 1.52028 1.17971 1.85441 1.48344 1.67990 1.09756 1.08524 1.22162 1.00220 0.79200 0.98917 1.22675 0.95832 1.00804 0.89767 1.62070 1.50128 1.08848 1.02772 1.23827 0.90136 0.96971 0.93604 1.22897 0.94182 0.89382 0.93166 1.46211 1.06666 1.27334 1.56438 1.19425 0.91167 1.01617 1.23769 0.89671 1.25642 0.99544 0.98700 1.02195 1.70038 1.20025 1.23225 1.47073 0.85070 0.78680 0.77100 0.78557 1.21441 1.22255 1.18977 1.22786 0.83827 0.94080 0.98667 1.22432 0.97635 0.88123 1.00100 1.21636 0.98276 0.97632 0.82363 0.94425 0.91760 0.91479 0.90396 0.90858 0.90363 0.92895 0.90228 0.91604 0.93285 0.92203 0.88583 0.87276 0.95846 0.89098 0.88195 0.95970 0.95294 0.94481 0.92437 0.92705 0.96624 0.88438 0.89997 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.91 71.98 0.64 -1.90 16 2 C -0.07 -1.28 1.88 -10.79 -0.02 -1.30 16 3 H 0.05 1.27 7.87 -2.39 -0.02 1.25 16 4 C -0.11 -1.37 5.20 30.59 0.16 -1.21 16 5 C -0.12 -1.62 5.92 30.59 0.18 -1.44 16 6 C -0.11 -1.71 5.92 30.59 0.18 -1.53 16 7 C -0.11 -2.12 5.07 30.59 0.16 -1.96 16 8 C -0.10 -1.82 1.23 -11.54 -0.01 -1.83 16 9 H 0.11 1.64 6.31 -2.39 -0.02 1.62 16 10 C 0.52 13.19 6.01 87.66 0.53 13.72 16 11 O -0.58 -18.94 14.49 -3.04 -0.04 -18.98 16 12 N -0.61 -14.42 3.00 -817.05 -2.45 -16.87 16 13 C 0.12 2.28 6.45 86.50 0.56 2.84 16 14 C 0.04 1.00 4.49 86.54 0.39 1.39 16 15 N -0.51 -14.69 4.76 -875.04 -4.16 -18.85 16 16 C 0.06 2.31 4.03 46.67 0.19 2.50 16 17 C 0.13 6.16 6.89 86.44 0.60 6.76 16 18 N -0.64 -32.40 3.70 -716.62 -2.65 -35.05 16 19 C -0.23 -12.92 10.70 84.03 0.90 -12.02 16 20 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 21 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 22 N -0.95 -58.21 11.35 21.65 0.25 -57.97 16 23 Si 0.98 45.78 29.56 68.60 2.03 47.80 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 C 0.13 5.04 8.42 86.49 0.73 5.77 16 28 C 0.05 1.23 5.61 86.39 0.48 1.72 16 29 C 0.12 2.97 6.58 86.35 0.57 3.54 16 30 H 0.04 0.85 6.46 -2.39 -0.02 0.83 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.30 7.93 -2.38 -0.02 1.28 16 41 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 42 H 0.11 1.66 5.28 -2.39 -0.01 1.64 16 43 H 0.02 0.75 6.45 -2.39 -0.02 0.73 16 44 H 0.09 2.45 6.06 -2.38 -0.01 2.44 16 45 H 0.10 3.62 8.04 -2.39 -0.02 3.60 16 46 H 0.02 1.08 5.65 -2.39 -0.01 1.07 16 47 H 0.03 1.59 7.06 -2.39 -0.02 1.57 16 48 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 49 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.06 1.94 6.22 -2.39 -0.01 1.93 16 51 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 52 H 0.10 2.38 8.04 -2.39 -0.02 2.36 16 53 H 0.08 2.15 7.10 -2.39 -0.02 2.13 16 54 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -70.58 397.45 0.51 -70.07 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.86 Total: 18.23 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 6.69 Total: 11.61 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -9.02 Total: -128.73 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.04 Total: -18.98 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -70.58 0.51 -70.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941540668.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.529 kcal (2) G-P(sol) polarization free energy of solvation -70.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds