Wall clock time and date at job start Tue Mar 31 2020 19:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47331 * 2 1 4 4 C 1.52998 * 109.47279 * 239.99882 * 2 1 3 5 5 C 1.52999 * 109.46943 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47349 * 59.99743 * 5 4 2 7 7 C 1.52996 * 109.47103 * 299.99721 * 6 5 4 8 8 C 1.53003 * 109.46829 * 119.99737 * 2 1 3 9 9 H 1.09004 * 109.46860 * 299.99701 * 8 2 1 10 10 C 1.50693 * 109.47276 * 59.99881 * 8 2 1 11 11 O 1.21288 * 119.99592 * 12.79582 * 10 8 2 12 12 N 1.34774 * 120.00028 * 192.79140 * 10 8 2 13 13 C 1.47077 * 120.88435 * 355.43366 * 12 10 8 14 14 C 1.53238 * 108.52281 * 128.78919 * 13 12 10 15 15 N 1.46892 * 109.36310 * 53.81876 * 14 13 12 16 16 C 1.46900 * 111.00426 * 172.75886 * 15 14 13 17 17 C 1.53945 * 113.74166 * 271.67726 * 16 15 14 18 18 N 1.47579 * 86.11239 * 222.04261 * 17 16 15 19 19 C 1.36945 * 134.49052 * 204.63555 * 18 17 16 20 20 H 1.07992 * 119.99960 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99700 * 0.02562 * 19 18 17 22 22 N 1.31622 * 119.99999 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99776 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47200 * 89.99761 * 23 21 19 25 25 H 1.48494 * 109.47497 * 209.99868 * 23 21 19 26 26 H 1.48499 * 109.47483 * 330.00409 * 23 21 19 27 27 C 1.47574 * 91.01924 * 24.63758 * 18 17 16 28 28 C 1.46899 * 111.26993 * 296.93657 * 15 14 13 29 29 C 1.47083 * 120.88045 * 175.40527 * 12 10 8 30 30 H 1.09004 * 109.47155 * 300.00743 * 1 2 3 31 31 H 1.09005 * 109.46887 * 60.00548 * 1 2 3 32 32 H 1.08999 * 109.47331 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46508 * 299.99795 * 4 2 1 34 34 H 1.08991 * 109.47314 * 59.99852 * 4 2 1 35 35 H 1.09007 * 109.47032 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.47148 * 299.99799 * 5 4 2 37 37 H 1.08999 * 109.46949 * 59.99935 * 6 5 4 38 38 H 1.09001 * 109.46975 * 179.97438 * 6 5 4 39 39 H 1.08995 * 109.47173 * 300.00401 * 7 6 5 40 40 H 1.08997 * 109.47152 * 179.97438 * 7 6 5 41 41 H 1.09000 * 109.62830 * 9.07827 * 13 12 10 42 42 H 1.08999 * 109.62345 * 248.50281 * 13 12 10 43 43 H 1.08998 * 109.48672 * 173.78955 * 14 13 12 44 44 H 1.08996 * 109.49278 * 293.84134 * 14 13 12 45 45 H 1.09002 * 112.93934 * 43.40401 * 16 15 14 46 46 H 1.08998 * 113.76707 * 336.33921 * 17 16 15 47 47 H 1.08997 * 113.76898 * 107.73987 * 17 16 15 48 48 H 0.96998 * 119.99337 * 180.02562 * 22 21 19 49 49 H 1.09000 * 113.77417 * 221.05897 * 27 18 17 50 50 H 1.09006 * 113.86876 * 89.66873 * 27 18 17 51 51 H 1.09004 * 109.46760 * 303.09941 * 28 15 14 52 52 H 1.09004 * 109.51240 * 183.05385 * 28 15 14 53 53 H 1.09004 * 109.62673 * 350.91676 * 29 12 10 54 54 H 1.09000 * 109.63241 * 111.49922 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4433 0.0005 7 6 3.5695 -0.7220 1.2497 8 6 2.0399 -0.7212 1.2493 9 1 1.6766 -0.2073 2.1393 10 6 1.5376 -2.1420 1.2494 11 8 1.0425 -2.6101 0.2460 12 7 1.6384 -2.8923 2.3644 13 6 2.3242 -2.3793 3.5601 14 6 1.3986 -2.5612 4.7678 15 7 0.9747 -3.9653 4.8494 16 6 0.2265 -4.2183 6.0880 17 6 1.1170 -4.6100 7.2810 18 7 0.0852 -5.6185 7.5911 19 6 -0.3074 -6.2713 8.7291 20 1 -1.1158 -6.9863 8.6898 21 6 0.3329 -6.0129 9.9333 22 7 1.3177 -5.1410 9.9813 23 14 -0.2031 -6.9028 11.4858 24 1 0.5729 -8.1609 11.6283 25 1 0.0424 -6.0336 12.6645 26 1 -1.6509 -7.2216 11.3989 27 6 -0.3535 -5.6411 6.1822 28 6 0.1891 -4.3542 3.6705 29 6 1.0652 -4.2458 2.4179 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6767 -1.7489 -1.2491 34 1 1.6767 -0.2075 -2.1391 35 1 3.9334 -1.2360 -2.1386 36 1 3.9337 0.3058 -1.2486 37 1 3.7158 -2.4708 0.0003 38 1 5.1695 -1.4440 0.0005 39 1 3.9331 0.3055 1.2498 40 1 3.9321 -1.2362 2.1397 41 1 2.5493 -1.3211 3.4274 42 1 3.2478 -2.9358 3.7195 43 1 1.9315 -2.2887 5.6787 44 1 0.5225 -1.9228 4.6540 45 1 -0.4955 -3.4341 6.3159 46 1 2.0766 -5.0380 6.9910 47 1 1.2089 -3.8290 8.0358 48 1 1.7654 -4.9609 10.8227 49 1 -1.4358 -5.6834 6.0597 50 1 0.1730 -6.3717 5.5680 51 1 -0.6704 -3.6911 3.5719 52 1 -0.1556 -5.3818 3.7855 53 1 0.4578 -4.4215 1.5300 54 1 1.8677 -4.9817 2.4676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941540671.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:41 Heat of formation + Delta-G solvation = 4.457577 kcal Electronic energy + Delta-G solvation = -30790.126994 eV Core-core repulsion = 26955.532744 eV Total energy + Delta-G solvation = -3834.594250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.96368 -40.43370 -38.75843 -37.60486 -35.31496 -33.89492 -33.40651 -32.65115 -31.50164 -29.74657 -27.92461 -27.26577 -26.73052 -24.74955 -24.48673 -23.90917 -22.42963 -22.12969 -21.17290 -20.64543 -19.58182 -18.78354 -17.96619 -16.98931 -16.79134 -16.72320 -16.56074 -16.04121 -15.88410 -15.74018 -15.44585 -15.16835 -14.86753 -14.73000 -14.44702 -14.26179 -14.04392 -13.77035 -13.59727 -13.42964 -13.30390 -13.08013 -12.91024 -12.83915 -12.81934 -12.56458 -12.42204 -12.33824 -12.28694 -12.19885 -12.11987 -11.80546 -11.70481 -11.63566 -11.58096 -11.17237 -10.98162 -10.89180 -10.86264 -10.15417 -9.72321 -9.21481 -8.91662 -7.90386 -5.24072 1.45948 1.48077 1.56544 1.69739 2.00706 2.45959 2.88708 3.29610 3.48104 3.49201 3.67985 3.70516 3.83211 3.91050 4.01987 4.10383 4.23868 4.26063 4.26679 4.29600 4.34445 4.40747 4.50600 4.56493 4.58970 4.61502 4.65640 4.71712 4.75919 4.81678 4.83759 4.88484 4.91732 4.93325 4.95830 5.02963 5.09051 5.12129 5.15293 5.25367 5.27360 5.33330 5.36820 5.39045 5.45846 5.48022 5.52203 5.53593 5.77553 5.92794 6.12245 6.18898 6.51901 6.92919 7.27911 7.60417 8.56706 9.26634 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.030552 B = 0.002277 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.243991 B =12296.194576 C =12569.758554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.066 4.066 3 H 0.091 0.909 4 C -0.136 4.136 5 C -0.114 4.114 6 C -0.121 4.121 7 C -0.111 4.111 8 C -0.103 4.103 9 H 0.108 0.892 10 C 0.522 3.478 11 O -0.564 6.564 12 N -0.613 5.613 13 C 0.116 3.884 14 C 0.040 3.960 15 N -0.530 5.530 16 C 0.061 3.939 17 C 0.183 3.817 18 N -0.644 5.644 19 C -0.235 4.235 20 H 0.083 0.917 21 C -0.067 4.067 22 N -0.952 5.952 23 Si 0.980 3.020 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.268 1.268 27 C 0.129 3.871 28 C 0.048 3.952 29 C 0.123 3.877 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.037 0.963 45 H 0.060 0.940 46 H 0.020 0.980 47 H 0.038 0.962 48 H 0.249 0.751 49 H 0.051 0.949 50 H 0.050 0.950 51 H 0.031 0.969 52 H 0.089 0.911 53 H 0.087 0.913 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.357 13.580 -21.508 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.085 4.085 3 H 0.110 0.890 4 C -0.173 4.173 5 C -0.152 4.152 6 C -0.159 4.159 7 C -0.149 4.149 8 C -0.124 4.124 9 H 0.126 0.874 10 C 0.313 3.687 11 O -0.444 6.444 12 N -0.346 5.346 13 C -0.006 4.006 14 C -0.089 4.089 15 N -0.255 5.255 16 C -0.048 4.048 17 C 0.058 3.942 18 N -0.371 5.371 19 C -0.364 4.364 20 H 0.100 0.900 21 C -0.260 4.260 22 N -0.601 5.601 23 Si 0.808 3.192 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.193 1.193 27 C 0.004 3.996 28 C -0.081 4.081 29 C 0.000 4.000 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.135 0.865 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.038 0.962 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.068 0.932 51 H 0.049 0.951 52 H 0.107 0.893 53 H 0.105 0.895 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.497 12.961 -21.704 25.676 hybrid contribution -0.966 -0.431 1.171 1.578 sum 3.531 12.530 -20.533 24.312 Atomic orbital electron populations 1.21928 0.95798 1.01680 1.01655 1.20914 0.95164 0.99174 0.93198 0.89030 1.21953 0.95704 1.02801 0.96830 1.21496 0.95426 1.00889 0.97347 1.21531 1.00774 0.98402 0.95144 1.21657 0.91410 1.03137 0.98654 1.21481 0.98224 0.91382 1.01284 0.87396 1.21085 0.77378 0.88549 0.81715 1.90527 1.46808 1.74369 1.32702 1.48334 1.56357 1.16101 1.13830 1.22069 0.95007 1.01451 0.82121 1.22529 0.98785 0.87978 0.99598 1.62094 1.40998 1.21351 1.01092 1.23707 0.95294 0.96189 0.89637 1.22037 0.90764 0.90269 0.91165 1.46177 1.38993 1.48733 1.03196 1.19389 1.13623 1.17793 0.85569 0.89958 1.25643 0.98697 1.00896 1.00753 1.70008 1.26324 1.38073 1.25655 0.85061 0.78096 0.77358 0.78702 1.21381 1.21871 1.19318 1.22738 0.97649 0.94218 0.85020 1.22427 0.94359 1.01674 0.89612 1.21573 0.97426 0.83713 0.97250 0.92603 0.92320 0.93634 0.90531 0.92663 0.92672 0.90856 0.94540 0.90753 0.88493 0.90373 0.86468 0.90042 0.89349 0.94478 0.92176 0.96174 0.94318 0.94184 0.93084 0.93218 0.95086 0.89309 0.89510 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.90 71.98 0.64 -2.09 16 2 C -0.07 -1.03 2.47 -10.79 -0.03 -1.05 16 3 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 4 C -0.14 -2.44 4.93 30.59 0.15 -2.29 16 5 C -0.11 -1.69 5.92 30.59 0.18 -1.50 16 6 C -0.12 -1.81 5.70 30.59 0.17 -1.64 16 7 C -0.11 -1.33 5.10 30.58 0.16 -1.17 16 8 C -0.10 -1.55 1.69 -11.55 -0.02 -1.57 16 9 H 0.11 1.32 7.18 -2.38 -0.02 1.30 16 10 C 0.52 11.31 5.07 87.66 0.44 11.75 16 11 O -0.56 -15.67 11.03 -3.05 -0.03 -15.70 16 12 N -0.61 -12.98 3.01 -817.94 -2.46 -15.44 16 13 C 0.12 2.07 5.39 86.35 0.47 2.53 16 14 C 0.04 0.92 5.59 86.38 0.48 1.41 16 15 N -0.53 -15.31 4.62 -876.07 -4.05 -19.36 16 16 C 0.06 2.23 3.48 46.67 0.16 2.39 16 17 C 0.18 8.72 7.32 86.48 0.63 9.36 16 18 N -0.64 -33.50 3.70 -717.45 -2.65 -36.15 16 19 C -0.24 -13.36 10.70 84.03 0.90 -12.46 16 20 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 21 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 22 N -0.95 -57.46 11.38 21.65 0.25 -57.22 16 23 Si 0.98 45.82 29.55 68.60 2.03 47.84 16 24 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 27 C 0.13 5.18 7.33 86.48 0.63 5.82 16 28 C 0.05 1.21 5.40 86.38 0.47 1.68 16 29 C 0.12 2.88 6.58 86.35 0.57 3.45 16 30 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.04 1.06 5.99 -2.39 -0.01 1.05 16 33 H 0.08 1.89 5.09 -2.39 -0.01 1.87 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.04 0.74 7.21 -2.39 -0.02 0.72 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 39 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 0.86 6.02 -2.39 -0.01 0.84 16 41 H 0.12 1.41 4.84 -2.39 -0.01 1.40 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.09 2.13 8.11 -2.39 -0.02 2.11 16 44 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 46 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.04 2.05 7.15 -2.39 -0.02 2.04 16 48 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 49 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.05 1.94 7.53 -2.38 -0.02 1.92 16 51 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 52 H 0.09 2.26 6.45 -2.38 -0.02 2.25 16 53 H 0.09 2.12 7.09 -2.39 -0.02 2.11 16 54 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -69.00 392.58 0.42 -68.58 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.86 Total: 16.21 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 6.48 Total: 11.23 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -8.91 Total: -128.16 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.03 Total: -15.70 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -69.00 0.42 -68.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941540671.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.034 kcal (2) G-P(sol) polarization free energy of solvation -68.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds