Wall clock time and date at job start Tue Mar 31 2020 19:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47181 * 2 1 4 4 H 1.08998 * 110.81387 * 51.66491 * 3 2 1 5 5 C 1.54885 * 110.75272 * 288.33179 * 3 2 1 6 6 C 1.54269 * 104.19690 * 203.73823 * 5 3 2 7 7 C 1.53883 * 106.59638 * 23.61035 * 6 5 3 8 8 C 1.54267 * 106.59401 * 0.02562 * 7 6 5 9 9 H 1.09002 * 110.49177 * 95.20496 * 8 7 6 10 10 C 1.50705 * 110.48501 * 217.71346 * 8 7 6 11 11 O 1.21276 * 120.00288 * 98.90443 * 10 8 7 12 12 N 1.34780 * 119.99709 * 278.90449 * 10 8 7 13 13 C 1.47081 * 120.87983 * 176.17757 * 12 10 8 14 14 C 1.53238 * 108.52283 * 129.09295 * 13 12 10 15 15 N 1.46901 * 109.34080 * 53.82671 * 14 13 12 16 16 C 1.46898 * 110.99785 * 172.75177 * 15 14 13 17 17 C 1.53940 * 113.74548 * 40.97690 * 16 15 14 18 18 N 1.47586 * 86.11762 * 222.04624 * 17 16 15 19 19 C 1.36937 * 134.49187 * 204.63576 * 18 17 16 20 20 H 1.07998 * 119.99775 * 181.89789 * 19 18 17 21 21 C 1.38806 * 120.00112 * 1.90249 * 19 18 17 22 22 N 1.31625 * 119.99900 * 8.23484 * 21 19 18 23 23 Si 1.86803 * 120.00218 * 188.23370 * 21 19 18 24 24 H 1.48502 * 109.47150 * 84.96061 * 23 21 19 25 25 H 1.48492 * 109.47390 * 204.96277 * 23 21 19 26 26 H 1.48503 * 109.46658 * 324.96318 * 23 21 19 27 27 C 1.47583 * 91.01175 * 24.64349 * 18 17 16 28 28 C 1.46902 * 111.27050 * 296.90065 * 15 14 13 29 29 C 1.47078 * 120.88113 * 356.46134 * 12 10 8 30 30 H 1.08997 * 109.47508 * 60.00011 * 1 2 3 31 31 H 1.09001 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46958 * 299.99749 * 1 2 3 33 33 H 1.08998 * 109.47419 * 240.00099 * 2 1 3 34 34 H 1.09004 * 109.47753 * 119.99745 * 2 1 3 35 35 H 1.08999 * 110.48780 * 85.06167 * 5 3 2 36 36 H 1.09001 * 110.49143 * 322.41771 * 5 3 2 37 37 H 1.08996 * 110.03427 * 264.33155 * 6 5 3 38 38 H 1.08997 * 110.03395 * 142.89130 * 6 5 3 39 39 H 1.08996 * 110.03279 * 240.71606 * 7 6 5 40 40 H 1.09000 * 110.07412 * 119.30460 * 7 6 5 41 41 H 1.09007 * 109.63027 * 248.80269 * 13 12 10 42 42 H 1.08996 * 109.62870 * 9.37606 * 13 12 10 43 43 H 1.08998 * 109.49012 * 293.87199 * 14 13 12 44 44 H 1.08991 * 109.49720 * 173.79087 * 14 13 12 45 45 H 1.09001 * 112.94290 * 172.71484 * 16 15 14 46 46 H 1.09001 * 113.76846 * 336.34826 * 17 16 15 47 47 H 1.08994 * 113.76945 * 107.74840 * 17 16 15 48 48 H 0.96999 * 119.99827 * 180.02562 * 22 21 19 49 49 H 1.09006 * 113.76389 * 221.05647 * 27 18 17 50 50 H 1.08990 * 113.87565 * 89.67387 * 27 18 17 51 51 H 1.09008 * 109.48702 * 303.14294 * 28 15 14 52 52 H 1.08997 * 109.51476 * 183.08260 * 28 15 14 53 53 H 1.08992 * 109.63141 * 350.62074 * 29 12 10 54 54 H 1.09000 * 109.63127 * 111.20281 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5733 2.0184 0.7992 5 6 1.7935 2.1119 -1.3749 6 6 2.8426 3.2410 -1.4396 7 6 3.9807 2.8387 -0.4851 8 6 3.5835 1.4789 0.1257 9 1 4.0341 0.6615 -0.4373 10 6 3.9959 1.4105 1.5736 11 8 3.1824 1.6267 2.4467 12 7 5.2688 1.1090 1.8982 13 6 5.7128 1.1185 3.3003 14 6 6.4203 -0.2082 3.5960 15 7 7.4865 -0.4216 2.6082 16 6 8.2996 -1.5945 2.9565 17 6 7.4762 -2.7885 3.4725 18 7 8.5384 -2.9551 4.4835 19 6 8.9978 -4.0086 5.2280 20 1 9.7938 -3.8585 5.9424 21 6 8.4407 -5.2693 5.0645 22 7 7.5881 -5.4903 4.0863 23 14 8.9007 -6.6525 6.2327 24 1 8.0419 -6.5851 7.4423 25 1 8.7009 -7.9591 5.5560 26 1 10.3252 -6.5128 6.6285 27 6 8.9063 -1.5304 4.3699 28 6 6.9385 -0.5452 1.2508 29 6 6.2522 0.7678 0.8591 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.7857 2.5244 -1.4231 36 1 1.9528 1.3964 -2.1816 37 1 2.3988 4.1822 -1.1154 38 1 3.2245 3.3381 -2.4559 39 1 4.0890 3.5847 0.3021 40 1 4.9152 2.7408 -1.0375 41 1 6.4045 1.9458 3.4598 42 1 4.8497 1.2276 3.9570 43 1 5.7010 -1.0250 3.5369 44 1 6.8523 -0.1751 4.5961 45 1 9.0194 -1.8578 2.1814 46 1 6.5103 -2.5074 3.8922 47 1 7.4098 -3.6148 2.7649 48 1 7.1985 -6.3712 3.9723 49 1 9.9817 -1.3524 4.3787 50 1 8.3617 -0.8784 5.0526 51 1 6.2119 -1.3574 1.2245 52 1 7.7461 -0.7568 0.5500 53 1 5.7458 0.6448 -0.0981 54 1 6.9958 1.5612 0.7839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941551651.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:41 Heat of formation + Delta-G solvation = 0.699483 kcal Electronic energy + Delta-G solvation = -30529.998480 eV Core-core repulsion = 26695.241267 eV Total energy + Delta-G solvation = -3834.757213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.70098 -40.61268 -38.80669 -37.77586 -35.23499 -34.13316 -33.73744 -32.42212 -30.45254 -29.51375 -28.51458 -27.64936 -26.65614 -25.02522 -24.51068 -23.79108 -22.85275 -21.60791 -20.95872 -20.27849 -19.59045 -18.77155 -18.32161 -17.24121 -16.96489 -16.93076 -16.43546 -16.17010 -15.89335 -15.66254 -15.52399 -15.49148 -15.24323 -14.50713 -14.39614 -14.16143 -13.96085 -13.80408 -13.67063 -13.49036 -13.34316 -13.25852 -12.91498 -12.79816 -12.73417 -12.70623 -12.33105 -12.21962 -12.20060 -11.99680 -11.94322 -11.87517 -11.77927 -11.57491 -11.46581 -11.38768 -11.31631 -11.25815 -10.90606 -10.66951 -9.78620 -9.26297 -8.87850 -7.93449 -5.28132 1.41831 1.44760 1.52540 1.60627 1.96784 2.42339 2.82883 3.23866 3.38700 3.47682 3.61531 3.65406 3.81660 3.87036 3.98530 4.05726 4.14624 4.19580 4.25846 4.32660 4.34974 4.44516 4.47237 4.49544 4.53867 4.59663 4.63417 4.67542 4.70812 4.73630 4.83601 4.85391 4.87182 4.91125 4.94331 4.95787 5.05719 5.10014 5.13872 5.20951 5.21197 5.24745 5.30610 5.34959 5.39176 5.42035 5.45840 5.51394 5.59233 5.88861 6.01856 6.14273 6.44023 6.87004 7.16190 7.57086 8.52354 9.21229 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.002567 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.523791 B =10904.460855 C =11742.171496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.076 4.076 4 H 0.063 0.937 5 C -0.113 4.113 6 C -0.120 4.120 7 C -0.105 4.105 8 C -0.109 4.109 9 H 0.115 0.885 10 C 0.516 3.484 11 O -0.588 6.588 12 N -0.613 5.613 13 C 0.125 3.875 14 C 0.045 3.955 15 N -0.514 5.514 16 C 0.069 3.931 17 C 0.126 3.874 18 N -0.639 5.639 19 C -0.234 4.234 20 H 0.085 0.915 21 C -0.069 4.069 22 N -0.951 5.951 23 Si 0.978 3.022 24 H -0.289 1.289 25 H -0.294 1.294 26 H -0.265 1.265 27 C 0.126 3.874 28 C 0.036 3.964 29 C 0.117 3.883 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.014 0.986 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.011 0.989 47 H 0.039 0.961 48 H 0.247 0.753 49 H 0.060 0.940 50 H 0.049 0.951 51 H 0.019 0.981 52 H 0.109 0.891 53 H 0.115 0.885 54 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 19.274 -16.241 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.095 4.095 4 H 0.081 0.919 5 C -0.150 4.150 6 C -0.157 4.157 7 C -0.143 4.143 8 C -0.130 4.130 9 H 0.133 0.867 10 C 0.306 3.694 11 O -0.469 6.469 12 N -0.346 5.346 13 C 0.002 3.998 14 C -0.084 4.084 15 N -0.238 5.238 16 C -0.040 4.040 17 C -0.001 4.001 18 N -0.366 5.366 19 C -0.362 4.362 20 H 0.103 0.897 21 C -0.262 4.262 22 N -0.600 5.600 23 Si 0.806 3.194 24 H -0.216 1.216 25 H -0.220 1.220 26 H -0.189 1.189 27 C 0.001 3.999 28 C -0.093 4.093 29 C -0.005 4.005 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.032 0.968 44 H 0.101 0.899 45 H 0.128 0.872 46 H 0.029 0.971 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.078 0.922 50 H 0.066 0.934 51 H 0.037 0.963 52 H 0.127 0.873 53 H 0.133 0.867 54 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.820 19.505 -15.683 26.221 hybrid contribution -0.579 -2.145 1.460 2.659 sum -8.399 17.360 -14.223 23.962 Atomic orbital electron populations 1.21726 0.95073 1.01724 1.01962 1.21509 0.96819 0.95906 1.01122 1.22045 0.92381 0.96357 0.98733 0.91899 1.22422 0.99515 0.97655 0.95432 1.22117 0.95180 0.98372 1.00062 1.22070 1.00479 0.93187 0.98557 1.22357 0.98231 1.01778 0.90639 0.86702 1.21221 0.80875 0.74826 0.92431 1.90645 1.51832 1.52098 1.52287 1.48347 1.10152 1.67874 1.08177 1.21593 0.98536 0.96999 0.82721 1.22459 0.92637 0.96077 0.97187 1.62084 1.21429 1.37835 1.02412 1.23836 0.95611 0.87451 0.97123 1.22873 0.90945 0.95599 0.90718 1.46108 1.37638 1.04855 1.48006 1.19402 1.15097 0.87014 1.14731 0.89717 1.25643 1.00204 0.99839 1.00491 1.70043 1.35285 1.21835 1.32853 0.85101 0.78283 0.78106 0.77931 1.21603 1.22014 1.18942 1.22836 0.98817 0.84511 0.93754 1.22589 0.99150 0.96877 0.90651 1.22112 0.91184 0.96421 0.90774 0.90986 0.92703 0.93960 0.90426 0.95068 0.90997 0.89968 0.91906 0.89489 0.92955 0.88572 0.89137 0.90678 0.96769 0.89853 0.87215 0.97103 0.94280 0.94402 0.92223 0.93356 0.96283 0.87305 0.86687 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.80 71.98 0.71 -1.85 16 2 C -0.12 -2.24 5.43 30.60 0.17 -2.08 16 3 C -0.08 -1.41 2.07 -9.49 -0.02 -1.43 16 4 H 0.06 1.54 7.27 -2.39 -0.02 1.52 16 5 C -0.11 -1.35 5.69 31.67 0.18 -1.17 16 6 C -0.12 -1.25 6.80 31.32 0.21 -1.04 16 7 C -0.10 -1.34 6.31 31.32 0.20 -1.14 16 8 C -0.11 -1.91 1.74 -10.46 -0.02 -1.93 16 9 H 0.12 1.60 6.40 -2.39 -0.02 1.59 16 10 C 0.52 13.35 6.80 87.66 0.60 13.95 16 11 O -0.59 -20.38 15.16 -3.02 -0.05 -20.43 16 12 N -0.61 -14.52 3.01 -817.95 -2.46 -16.99 16 13 C 0.12 3.31 6.61 86.35 0.57 3.88 16 14 C 0.05 1.40 4.57 86.38 0.39 1.80 16 15 N -0.51 -14.80 4.76 -876.01 -4.17 -18.98 16 16 C 0.07 2.51 4.05 46.67 0.19 2.70 16 17 C 0.13 6.08 6.98 86.48 0.60 6.68 16 18 N -0.64 -33.33 3.69 -717.31 -2.65 -35.97 16 19 C -0.23 -13.37 10.69 84.03 0.90 -12.48 16 20 H 0.09 4.61 7.84 -2.91 -0.02 4.59 16 21 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 22 N -0.95 -58.65 11.34 21.65 0.25 -58.41 16 23 Si 0.98 46.55 29.56 68.60 2.03 48.57 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 27 C 0.13 5.04 8.41 86.48 0.73 5.76 16 28 C 0.04 0.83 5.58 86.38 0.48 1.31 16 29 C 0.12 2.00 6.44 86.35 0.56 2.55 16 30 H 0.07 0.97 7.65 -2.39 -0.02 0.95 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 1.23 7.99 -2.39 -0.02 1.21 16 34 H 0.03 0.78 8.14 -2.38 -0.02 0.77 16 35 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 36 H 0.08 0.78 7.93 -2.39 -0.02 0.77 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.05 0.84 7.83 -2.39 -0.02 0.82 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.09 2.08 8.14 -2.38 -0.02 2.07 16 42 H 0.07 2.26 7.05 -2.39 -0.02 2.24 16 43 H 0.01 0.53 6.40 -2.39 -0.02 0.52 16 44 H 0.08 2.71 5.90 -2.39 -0.01 2.69 16 45 H 0.11 3.84 8.08 -2.39 -0.02 3.82 16 46 H 0.01 0.58 5.71 -2.39 -0.01 0.56 16 47 H 0.04 2.16 6.93 -2.39 -0.02 2.14 16 48 H 0.25 14.83 8.31 -92.71 -0.77 14.05 16 49 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 50 H 0.05 1.86 6.04 -2.39 -0.01 1.85 16 51 H 0.02 0.53 8.14 -2.38 -0.02 0.51 16 52 H 0.11 2.09 8.07 -2.39 -0.02 2.07 16 53 H 0.12 1.32 5.59 -2.39 -0.01 1.31 16 54 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -74.16 402.82 0.72 -73.44 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.86 Total: 16.77 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 6.91 Total: 11.99 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -9.04 Total: -130.34 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.05 Total: -20.43 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -74.16 0.72 -73.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941551651.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.144 kcal (2) G-P(sol) polarization free energy of solvation -74.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds