Wall clock time and date at job start Tue Mar 31 2020 19:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46875 * 2 1 4 4 H 1.08995 * 110.05410 * 303.88381 * 3 2 1 5 5 C 1.54264 * 110.03050 * 65.30490 * 3 2 1 6 6 C 1.54895 * 104.31090 * 142.82851 * 5 3 2 7 7 C 1.55027 * 102.68457 * 322.22355 * 6 5 3 8 8 C 1.53877 * 110.02933 * 182.46914 * 3 2 1 9 9 H 1.09001 * 110.03352 * 121.43222 * 8 3 2 10 10 C 1.50698 * 110.03495 * 0.04748 * 8 3 2 11 11 O 1.21285 * 120.00261 * 264.98887 * 10 8 3 12 12 N 1.34777 * 119.99930 * 84.98140 * 10 8 3 13 13 C 1.47079 * 120.88103 * 4.68682 * 12 10 8 14 14 C 1.53699 * 108.27872 * 128.74912 * 13 12 10 15 15 N 1.46900 * 109.25543 * 54.08178 * 14 13 12 16 16 C 1.46902 * 111.00296 * 172.60867 * 15 14 13 17 17 C 1.53941 * 113.73948 * 43.04155 * 16 15 14 18 18 N 1.47809 * 86.03870 * 222.08601 * 17 16 15 19 19 C 1.36933 * 134.45926 * 204.64858 * 18 17 16 20 20 H 1.08006 * 120.00405 * 179.86755 * 19 18 17 21 21 C 1.38812 * 120.00000 * 359.86219 * 19 18 17 22 22 N 1.31611 * 119.99981 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00024 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47375 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46995 * 120.00224 * 23 21 19 26 26 H 1.48504 * 109.47260 * 240.00453 * 23 21 19 27 27 C 1.47586 * 91.05084 * 24.54900 * 18 17 16 28 28 C 1.46901 * 111.27009 * 296.75884 * 15 14 13 29 29 C 1.47084 * 120.88359 * 184.95863 * 12 10 8 30 30 H 1.08993 * 109.47016 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46798 * 299.99709 * 1 2 3 32 32 H 1.08996 * 109.47380 * 59.99614 * 1 2 3 33 33 H 1.09000 * 109.47304 * 240.00175 * 2 1 3 34 34 H 1.09003 * 109.47504 * 119.99708 * 2 1 3 35 35 H 1.08998 * 110.48623 * 261.56926 * 5 3 2 36 36 H 1.08993 * 110.49330 * 24.08434 * 5 3 2 37 37 H 1.09001 * 110.75722 * 80.43894 * 6 5 3 38 38 H 1.09001 * 110.75347 * 203.80673 * 6 5 3 39 39 H 1.09001 * 110.36588 * 279.10074 * 7 6 5 40 40 H 1.08997 * 110.52683 * 156.51502 * 7 6 5 41 41 H 1.08999 * 109.63351 * 248.52111 * 13 12 10 42 42 H 1.08995 * 109.62661 * 9.10455 * 13 12 10 43 43 H 1.09000 * 109.64804 * 294.08473 * 14 13 12 44 44 H 1.08999 * 109.42435 * 173.94616 * 14 13 12 45 45 H 1.08997 * 112.94760 * 174.63730 * 16 15 14 46 46 H 1.08998 * 113.77320 * 336.35272 * 17 16 15 47 47 H 1.09008 * 113.76667 * 107.74985 * 17 16 15 48 48 H 0.97007 * 120.00312 * 179.97438 * 22 21 19 49 49 H 1.09001 * 113.77316 * 221.15057 * 27 18 17 50 50 H 1.09002 * 113.86583 * 89.76886 * 27 18 17 51 51 H 1.09002 * 109.49217 * 303.14288 * 28 15 14 52 52 H 1.09004 * 109.49349 * 183.05832 * 28 15 14 53 53 H 1.09003 * 109.62328 * 350.90259 * 29 12 10 54 54 H 1.09004 * 109.62509 * 111.48084 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6264 1.9852 -0.8500 5 6 1.6452 2.1426 1.3168 6 6 2.8598 3.0441 1.6503 7 6 4.0632 2.1671 1.2188 8 6 3.5774 1.4581 -0.0623 9 1 3.9099 2.0084 -0.9425 10 6 4.1066 0.0478 -0.1052 11 8 4.4479 -0.5034 0.9198 12 7 4.2005 -0.6012 -1.2828 13 6 3.8893 0.0815 -2.5478 14 6 5.0641 -0.1362 -3.5147 15 7 5.3316 -1.5756 -3.6357 16 6 6.3291 -1.8396 -4.6814 17 6 7.5207 -0.8652 -4.6614 18 7 7.3969 -0.8450 -6.1341 19 6 8.2585 -0.5821 -7.1655 20 1 7.9116 -0.6387 -8.1868 21 6 9.5777 -0.2426 -6.8984 22 7 10.0005 -0.1740 -5.6540 23 14 10.7528 0.1167 -8.3053 24 1 10.0362 -0.0273 -9.5980 25 1 11.2685 1.5035 -8.1776 26 1 11.8878 -0.8398 -8.2589 27 6 5.9733 -1.2242 -6.0469 28 6 5.7518 -2.1494 -2.3504 29 6 4.6112 -2.0125 -1.3363 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.7495 2.7470 1.1738 36 1 1.4868 1.4084 2.1066 37 1 2.8274 3.9662 1.0700 38 1 2.8993 3.2595 2.7181 39 1 4.2976 1.4369 1.9934 40 1 4.9321 2.7893 1.0044 41 1 2.9775 -0.3363 -2.9747 42 1 3.7564 1.1478 -2.3654 43 1 5.9517 0.3678 -3.1323 44 1 4.8080 0.2697 -4.4934 45 1 6.6206 -2.8885 -4.7354 46 1 7.2982 0.0913 -4.1886 47 1 8.4480 -1.3126 -4.3034 48 1 10.9225 0.0629 -5.4673 49 1 5.6673 -1.9575 -6.7931 50 1 5.2937 -0.3744 -5.9822 51 1 6.6299 -1.6173 -1.9843 52 1 5.9945 -3.2036 -2.4846 53 1 4.9556 -2.3311 -0.3525 54 1 3.7674 -2.6277 -1.6490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941551652.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:46 Heat of formation + Delta-G solvation = 7.379229 kcal Electronic energy + Delta-G solvation = -30900.191365 eV Core-core repulsion = 27065.723807 eV Total energy + Delta-G solvation = -3834.467558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.89081 -40.65051 -38.70740 -37.73723 -35.22941 -34.03304 -33.77656 -32.33454 -30.46352 -29.55841 -28.45031 -27.58400 -26.64957 -24.87710 -24.55820 -23.84563 -22.99825 -21.57932 -21.24330 -20.33948 -19.07221 -18.72324 -18.19234 -17.21209 -17.10740 -16.94116 -16.57786 -16.18035 -16.02776 -15.65746 -15.64459 -15.40844 -15.22101 -14.54876 -14.39744 -14.12214 -13.86746 -13.81501 -13.44736 -13.43734 -13.31823 -13.23663 -12.96015 -12.83286 -12.69129 -12.44720 -12.29988 -12.20767 -12.11769 -12.03257 -11.87595 -11.83778 -11.77136 -11.73375 -11.45972 -11.40727 -11.37847 -11.28293 -10.87752 -10.63717 -9.75152 -9.26222 -8.86983 -7.92660 -5.26904 1.43439 1.44313 1.54875 1.63221 1.97921 2.43364 2.83579 3.27406 3.39473 3.46986 3.61701 3.63385 3.81631 3.84394 3.98680 4.04828 4.16373 4.21085 4.26938 4.32344 4.34908 4.44741 4.44832 4.47437 4.57369 4.63337 4.66712 4.71282 4.73948 4.78776 4.80518 4.82324 4.89354 4.92790 4.94634 4.99680 5.05606 5.08920 5.16729 5.20952 5.21391 5.24921 5.29111 5.37157 5.39897 5.45514 5.46828 5.52127 5.55608 5.88392 6.05502 6.11658 6.43902 6.88242 7.17787 7.58300 8.53320 9.23513 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.019353 B = 0.002593 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.475974 B =10796.826383 C =11228.618346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C -0.071 4.071 4 H 0.103 0.897 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.114 4.114 9 H 0.108 0.892 10 C 0.526 3.474 11 O -0.586 6.586 12 N -0.613 5.613 13 C 0.120 3.880 14 C 0.034 3.966 15 N -0.512 5.512 16 C 0.064 3.936 17 C 0.134 3.866 18 N -0.640 5.640 19 C -0.229 4.229 20 H 0.087 0.913 21 C -0.071 4.071 22 N -0.957 5.957 23 Si 0.979 3.021 24 H -0.262 1.262 25 H -0.294 1.294 26 H -0.293 1.293 27 C 0.130 3.870 28 C 0.046 3.954 29 C 0.124 3.876 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.019 0.981 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.018 0.982 47 H 0.027 0.973 48 H 0.246 0.754 49 H 0.059 0.941 50 H 0.057 0.943 51 H 0.013 0.987 52 H 0.096 0.904 53 H 0.080 0.920 54 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.939 3.448 12.044 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C -0.089 4.089 4 H 0.121 0.879 5 C -0.152 4.152 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.135 4.135 9 H 0.126 0.874 10 C 0.317 3.683 11 O -0.466 6.466 12 N -0.345 5.345 13 C -0.003 4.003 14 C -0.095 4.095 15 N -0.236 5.236 16 C -0.046 4.046 17 C 0.007 3.993 18 N -0.367 5.367 19 C -0.358 4.358 20 H 0.105 0.895 21 C -0.264 4.264 22 N -0.606 5.606 23 Si 0.807 3.193 24 H -0.186 1.186 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.005 3.995 28 C -0.083 4.083 29 C 0.002 3.998 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.127 0.873 43 H 0.037 0.963 44 H 0.113 0.887 45 H 0.120 0.880 46 H 0.036 0.964 47 H 0.045 0.955 48 H 0.055 0.945 49 H 0.077 0.923 50 H 0.075 0.925 51 H 0.031 0.969 52 H 0.115 0.885 53 H 0.099 0.901 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.939 2.982 12.270 25.314 hybrid contribution 2.460 0.471 -0.350 2.529 sum -19.479 3.454 11.920 23.097 Atomic orbital electron populations 1.21713 0.94127 1.01721 1.02546 1.21789 0.97443 0.96012 1.01268 1.21762 0.90417 0.96554 1.00212 0.87867 1.22433 0.98525 0.98245 0.95997 1.22502 0.93310 0.98088 1.01604 1.22390 0.98990 0.98457 0.95834 1.22209 0.98197 0.91560 1.01573 0.87366 1.20927 0.75983 0.89083 0.82315 1.90632 1.51527 1.69863 1.34606 1.48319 1.67042 1.12364 1.06778 1.22140 0.97535 0.98844 0.81731 1.22728 0.97255 0.88678 1.00799 1.62092 1.42562 1.13565 1.05368 1.23849 0.89980 0.99016 0.91706 1.22811 0.96357 0.95422 0.84740 1.46205 1.06862 1.81284 1.02321 1.19478 0.90461 1.38624 0.87220 0.89484 1.25658 0.98955 1.02852 0.98894 1.70043 1.15769 1.55885 1.18902 0.84996 0.78620 0.76744 0.78903 1.18558 1.22101 1.22041 1.22837 0.85677 0.96655 0.94340 1.22413 0.95794 1.00908 0.89194 1.21623 0.97338 0.82025 0.98848 0.93149 0.92233 0.91448 0.91752 0.94272 0.89498 0.92561 0.89877 0.91000 0.92286 0.91462 0.88375 0.87326 0.96291 0.88739 0.88002 0.96411 0.95501 0.94505 0.92274 0.92530 0.96896 0.88548 0.90123 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.74 71.98 0.70 -1.10 16 2 C -0.13 -2.11 4.11 30.60 0.13 -1.98 16 3 C -0.07 -1.00 2.96 -10.07 -0.03 -1.03 16 4 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 5 C -0.11 -1.50 5.40 31.67 0.17 -1.33 16 6 C -0.12 -1.62 6.92 31.94 0.22 -1.40 16 7 C -0.12 -2.33 6.29 31.72 0.20 -2.13 16 8 C -0.11 -2.14 2.54 -10.81 -0.03 -2.16 16 9 H 0.11 1.70 6.15 -2.39 -0.01 1.69 16 10 C 0.53 13.39 4.70 87.66 0.41 13.80 16 11 O -0.59 -19.49 14.71 -3.04 -0.04 -19.53 16 12 N -0.61 -14.18 2.15 -817.03 -1.76 -15.94 16 13 C 0.12 2.29 5.88 86.50 0.51 2.79 16 14 C 0.03 0.91 4.65 86.54 0.40 1.31 16 15 N -0.51 -14.66 4.77 -875.06 -4.17 -18.83 16 16 C 0.06 2.31 4.05 46.67 0.19 2.50 16 17 C 0.13 6.39 6.81 86.44 0.59 6.98 16 18 N -0.64 -32.58 3.70 -716.66 -2.65 -35.23 16 19 C -0.23 -12.86 10.70 84.03 0.90 -11.96 16 20 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 21 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 22 N -0.96 -58.92 11.39 21.65 0.25 -58.67 16 23 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 C 0.13 4.97 8.40 86.49 0.73 5.69 16 28 C 0.05 1.25 5.55 86.38 0.48 1.73 16 29 C 0.12 2.98 6.61 86.35 0.57 3.55 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.69 7.42 -2.39 -0.02 0.67 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 1.13 5.98 -2.39 -0.01 1.12 16 34 H 0.04 0.87 7.35 -2.39 -0.02 0.86 16 35 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.88 7.80 -2.39 -0.02 0.86 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 1.49 6.79 -2.39 -0.02 1.47 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.10 1.55 8.08 -2.39 -0.02 1.53 16 42 H 0.11 1.61 5.47 -2.39 -0.01 1.60 16 43 H 0.02 0.62 6.38 -2.39 -0.02 0.61 16 44 H 0.09 2.51 5.81 -2.39 -0.01 2.50 16 45 H 0.10 3.69 8.11 -2.39 -0.02 3.67 16 46 H 0.02 0.90 5.76 -2.39 -0.01 0.88 16 47 H 0.03 1.49 7.17 -2.38 -0.02 1.47 16 48 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 49 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.06 1.99 5.93 -2.39 -0.01 1.98 16 51 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 52 H 0.10 2.41 8.09 -2.39 -0.02 2.39 16 53 H 0.08 2.14 7.04 -2.39 -0.02 2.13 16 54 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -72.00 395.30 1.12 -70.88 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.87 Total: 17.60 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 6.60 Total: 11.66 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -8.34 Total: -128.67 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.04 Total: -19.53 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -72.00 1.12 -70.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941551652.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.256 kcal (2) G-P(sol) polarization free energy of solvation -71.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds