Wall clock time and date at job start Tue Mar 31 2020 18:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47182 * 2 1 4 4 C 1.53004 * 109.46709 * 119.99818 * 2 1 3 5 5 C 1.52991 * 115.55218 * 322.63606 * 4 2 1 6 6 C 1.52995 * 117.49570 * 176.95956 * 4 2 1 7 7 C 1.53000 * 60.00218 * 252.51478 * 6 4 2 8 8 H 1.09007 * 117.50117 * 252.51291 * 7 6 4 9 9 C 1.50692 * 117.50028 * 107.49080 * 7 6 4 10 10 O 1.21283 * 120.00419 * 251.40639 * 9 7 6 11 11 N 1.34776 * 120.00344 * 71.41036 * 9 7 6 12 12 C 1.47083 * 120.87671 * 359.72375 * 11 9 7 13 13 C 1.53695 * 108.27778 * 128.75865 * 12 11 9 14 14 N 1.46897 * 109.26152 * 54.07972 * 13 12 11 15 15 C 1.46894 * 111.00352 * 172.61042 * 14 13 12 16 16 C 1.53947 * 113.74036 * 40.97531 * 15 14 13 17 17 N 1.47584 * 86.11868 * 222.04861 * 16 15 14 18 18 C 1.36933 * 134.49733 * 204.64041 * 17 16 15 19 19 H 1.07992 * 120.00353 * 179.97438 * 18 17 16 20 20 C 1.38815 * 119.99876 * 0.02562 * 18 17 16 21 21 N 1.31623 * 119.99816 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00218 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46962 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47296 * 120.00012 * 22 20 18 25 25 H 1.48503 * 109.46910 * 240.00248 * 22 20 18 26 26 C 1.47579 * 91.01047 * 24.63980 * 17 16 15 27 27 C 1.46905 * 111.26810 * 296.75742 * 14 13 12 28 28 C 1.47083 * 120.88681 * 180.02562 * 11 9 7 29 29 H 1.08995 * 109.47719 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47638 * 300.00187 * 1 2 3 31 31 H 1.09007 * 109.47260 * 59.99874 * 1 2 3 32 32 H 1.08996 * 109.46766 * 239.99553 * 2 1 3 33 33 H 1.09000 * 109.46934 * 171.55952 * 3 2 1 34 34 H 1.08999 * 109.47508 * 291.56562 * 3 2 1 35 35 H 1.09006 * 109.47247 * 51.56623 * 3 2 1 36 36 H 1.09002 * 109.48119 * 85.58299 * 5 4 2 37 37 H 1.09005 * 109.46983 * 205.58332 * 5 4 2 38 38 H 1.09001 * 109.47570 * 325.57645 * 5 4 2 39 39 H 1.08998 * 117.50006 * 359.97438 * 6 4 2 40 40 H 1.09000 * 117.49615 * 145.00522 * 6 4 2 41 41 H 1.09002 * 109.62585 * 248.52260 * 12 11 9 42 42 H 1.09002 * 109.63100 * 9.10294 * 12 11 9 43 43 H 1.09007 * 109.64567 * 294.07487 * 13 12 11 44 44 H 1.09006 * 109.44088 * 173.96232 * 13 12 11 45 45 H 1.08997 * 112.94615 * 172.70444 * 15 14 13 46 46 H 1.08998 * 113.77419 * 336.34526 * 16 15 14 47 47 H 1.08997 * 113.77222 * 107.74697 * 16 15 14 48 48 H 0.96997 * 119.99980 * 179.97438 * 21 20 18 49 49 H 1.09005 * 113.76791 * 221.05401 * 26 17 16 50 50 H 1.09002 * 113.87353 * 89.68082 * 26 17 16 51 51 H 1.09003 * 109.49043 * 303.14686 * 27 14 13 52 52 H 1.08994 * 109.51366 * 183.07740 * 27 14 13 53 53 H 1.09003 * 109.62442 * 350.89350 * 28 11 9 54 54 H 1.08996 * 109.63007 * 111.47599 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.2255 -0.4897 2.5236 6 6 3.5531 -0.8907 1.3990 7 6 2.6779 -2.0988 1.0587 8 1 2.5174 -2.8404 1.8413 9 6 2.7560 -2.6412 -0.3450 10 8 1.8269 -2.4840 -1.1085 11 7 3.8583 -3.3013 -0.7521 12 6 4.9988 -3.4979 0.1556 13 6 5.3653 -4.9905 0.1529 14 7 5.5898 -5.4318 -1.2301 15 6 6.1119 -6.8044 -1.2666 16 6 5.4398 -7.7502 -0.2548 17 7 6.7960 -8.2695 0.0086 18 6 7.2951 -9.4533 0.4823 19 1 8.3618 -9.5872 0.5847 20 6 6.4300 -10.4818 0.8298 21 7 5.1299 -10.3189 0.7044 22 14 7.1109 -12.0971 1.4753 23 1 8.5935 -12.0265 1.5204 24 1 6.5848 -12.3453 2.8416 25 1 6.6956 -13.2038 0.5763 26 6 7.3981 -7.0003 -0.4437 27 6 4.3651 -5.3129 -2.0328 28 6 3.9555 -3.8383 -2.1180 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.1195 1.4461 0.1508 34 1 1.8050 1.9110 -0.9557 35 1 1.5588 1.9980 0.8050 36 1 0.3964 -1.1964 2.5586 37 1 1.8644 -0.6357 3.3946 38 1 0.8356 0.5282 2.5257 39 1 4.1853 -0.4888 0.6072 40 1 3.9684 -0.8373 2.4053 41 1 5.8480 -2.9086 -0.1904 42 1 4.7218 -3.1893 1.1637 43 1 4.5518 -5.5684 0.5917 44 1 6.2743 -5.1419 0.7352 45 1 6.1709 -7.2098 -2.2766 46 1 4.9930 -7.2370 0.5967 47 1 4.7713 -8.4795 -0.7121 48 1 4.5254 -11.0376 0.9469 49 1 8.2932 -7.1309 -1.0520 50 1 7.5275 -6.2655 0.3510 51 1 3.5656 -5.8863 -1.5635 52 1 4.5485 -5.6979 -3.0358 53 1 2.9883 -3.7549 -2.6138 54 1 4.7065 -3.2811 -2.6780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941621653.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:09 Heat of formation + Delta-G solvation = 39.016482 kcal Electronic energy + Delta-G solvation = -30467.771986 eV Core-core repulsion = 26634.676322 eV Total energy + Delta-G solvation = -3833.095663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.75187 -40.68584 -39.00353 -37.73857 -35.26769 -34.37233 -33.68986 -32.17334 -29.91308 -29.46270 -28.05961 -27.61052 -26.64786 -25.23613 -24.77080 -24.08174 -23.58267 -22.14468 -20.72846 -19.90646 -18.97952 -18.71079 -18.04215 -17.23189 -16.99226 -16.89430 -16.59022 -16.17580 -15.68994 -15.66685 -15.58259 -15.28459 -14.86128 -14.47499 -14.24043 -14.13878 -13.85462 -13.76402 -13.44409 -13.41300 -13.35439 -13.18845 -13.15080 -12.95906 -12.83738 -12.67612 -12.58321 -12.28650 -12.19125 -12.12394 -12.06340 -11.98910 -11.84742 -11.74292 -11.48727 -11.38866 -10.99579 -10.87812 -10.69227 -10.45166 -9.74116 -9.26242 -8.87334 -7.92931 -5.27273 1.43317 1.44279 1.54854 1.57463 1.93649 2.43232 2.70621 2.83938 3.27225 3.43450 3.47607 3.66453 3.82243 3.85807 3.90738 3.97955 4.02423 4.10081 4.21487 4.27047 4.39295 4.41236 4.45648 4.46838 4.53457 4.61800 4.66561 4.72930 4.78391 4.80887 4.83967 4.88134 4.90758 4.93881 4.94078 4.99340 5.05365 5.05410 5.09498 5.12614 5.21043 5.22839 5.24461 5.36618 5.41047 5.46017 5.50258 5.52061 5.65165 5.88575 6.05085 6.11768 6.42816 6.88383 7.16621 7.58066 8.53182 9.23259 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.002389 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.604243 B =11716.999845 C =12090.524432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.139 4.139 4 C -0.088 4.088 5 C -0.113 4.113 6 C -0.134 4.134 7 C -0.197 4.197 8 H 0.132 0.868 9 C 0.541 3.459 10 O -0.571 6.571 11 N -0.609 5.609 12 C 0.125 3.875 13 C 0.035 3.965 14 N -0.514 5.514 15 C 0.064 3.936 16 C 0.134 3.866 17 N -0.640 5.640 18 C -0.229 4.229 19 H 0.087 0.913 20 C -0.072 4.072 21 N -0.957 5.957 22 Si 0.980 3.020 23 H -0.261 1.261 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.130 3.870 27 C 0.045 3.955 28 C 0.124 3.876 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.128 0.872 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.019 0.981 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.019 0.981 47 H 0.027 0.973 48 H 0.246 0.754 49 H 0.059 0.941 50 H 0.056 0.944 51 H 0.014 0.986 52 H 0.098 0.902 53 H 0.083 0.917 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 25.226 0.423 25.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.091 4.091 3 C -0.196 4.196 4 C -0.089 4.089 5 C -0.170 4.170 6 C -0.171 4.171 7 C -0.218 4.218 8 H 0.150 0.850 9 C 0.331 3.669 10 O -0.451 6.451 11 N -0.342 5.342 12 C 0.003 3.997 13 C -0.093 4.093 14 N -0.237 5.237 15 C -0.046 4.046 16 C 0.007 3.993 17 N -0.367 5.367 18 C -0.358 4.358 19 H 0.105 0.895 20 C -0.264 4.264 21 N -0.606 5.606 22 Si 0.808 3.192 23 H -0.186 1.186 24 H -0.221 1.221 25 H -0.220 1.220 26 C 0.005 3.995 27 C -0.083 4.083 28 C 0.002 3.998 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.146 0.854 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.038 0.962 44 H 0.110 0.890 45 H 0.120 0.880 46 H 0.037 0.963 47 H 0.045 0.955 48 H 0.055 0.945 49 H 0.077 0.923 50 H 0.074 0.926 51 H 0.032 0.968 52 H 0.116 0.884 53 H 0.101 0.899 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.504 25.319 -0.088 25.561 hybrid contribution -0.738 -2.379 0.688 2.584 sum -4.241 22.940 0.600 23.337 Atomic orbital electron populations 1.21692 0.95059 1.00701 1.01591 1.20823 0.96191 0.96119 0.95924 1.21792 1.01264 0.94807 1.01746 1.21674 0.95284 0.94268 0.97648 1.21386 0.99312 1.02402 0.93877 1.23348 0.92766 0.96525 1.04413 1.22333 1.11025 0.94061 0.94394 0.84990 1.20181 0.80936 0.76934 0.88852 1.90628 1.38223 1.59283 1.56978 1.48303 1.16913 1.54952 1.14033 1.22045 0.88422 0.94428 0.94840 1.22710 1.00870 0.95703 0.90038 1.62087 1.28566 1.21544 1.11550 1.23852 0.95896 0.86220 0.98605 1.22785 0.89065 0.92967 0.94518 1.46165 1.03855 1.10240 1.76431 1.19475 0.92239 0.89257 1.34781 0.89477 1.25672 0.95706 1.02024 1.03015 1.70046 1.02208 1.33095 1.55276 0.84987 0.78175 0.79078 0.76977 1.18553 1.22073 1.22036 1.22823 0.95533 0.86312 0.94840 1.22437 0.90338 0.96384 0.99181 1.21657 1.02377 0.92510 0.83299 0.94588 0.91399 0.93281 0.91894 0.92248 0.93064 0.91723 0.92801 0.90999 0.90714 0.88268 0.85440 0.88683 0.87416 0.96245 0.88964 0.87978 0.96325 0.95494 0.94489 0.92279 0.92632 0.96784 0.88404 0.89869 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.63 71.98 0.62 -1.92 16 2 C -0.07 -1.37 2.32 -10.79 -0.03 -1.39 16 3 C -0.14 -2.00 9.18 71.98 0.66 -1.33 16 4 C -0.09 -1.44 1.83 -52.18 -0.10 -1.54 16 5 C -0.11 -1.46 8.61 71.98 0.62 -0.84 16 6 C -0.13 -1.74 8.14 30.59 0.25 -1.49 16 7 C -0.20 -3.76 4.21 -11.54 -0.05 -3.80 16 8 H 0.13 2.41 8.14 -2.38 -0.02 2.39 16 9 C 0.54 13.85 6.69 87.65 0.59 14.43 16 10 O -0.57 -18.41 13.91 -3.04 -0.04 -18.45 16 11 N -0.61 -14.37 3.00 -816.95 -2.45 -16.82 16 12 C 0.13 2.48 6.32 86.50 0.55 3.03 16 13 C 0.04 0.96 4.58 86.54 0.40 1.36 16 14 N -0.51 -14.85 4.76 -874.94 -4.17 -19.01 16 15 C 0.06 2.32 4.05 46.67 0.19 2.51 16 16 C 0.13 6.40 6.81 86.48 0.59 6.99 16 17 N -0.64 -32.70 3.70 -717.25 -2.65 -35.35 16 18 C -0.23 -12.86 10.70 84.03 0.90 -11.96 16 19 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 20 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 21 N -0.96 -58.95 11.38 21.65 0.25 -58.71 16 22 Si 0.98 46.07 29.55 68.60 2.03 48.09 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 26 C 0.13 5.01 8.41 86.48 0.73 5.73 16 27 C 0.05 1.24 5.59 86.40 0.48 1.72 16 28 C 0.12 2.97 6.60 86.36 0.57 3.54 16 29 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 1.03 6.67 -2.39 -0.02 1.01 16 31 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.06 1.59 5.17 -2.39 -0.01 1.58 16 33 H 0.06 0.78 7.25 -2.39 -0.02 0.76 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.77 8.04 -2.38 -0.02 0.75 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.73 7.90 -2.38 -0.02 0.71 16 38 H 0.07 0.82 7.15 -2.39 -0.02 0.80 16 39 H 0.10 1.31 7.78 -2.39 -0.02 1.29 16 40 H 0.13 1.10 8.05 -2.39 -0.02 1.08 16 41 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.11 1.72 5.92 -2.39 -0.01 1.71 16 43 H 0.02 0.65 6.40 -2.38 -0.02 0.63 16 44 H 0.09 2.52 5.90 -2.38 -0.01 2.51 16 45 H 0.10 3.70 8.08 -2.39 -0.02 3.68 16 46 H 0.02 0.94 5.71 -2.39 -0.01 0.93 16 47 H 0.03 1.49 7.15 -2.39 -0.02 1.47 16 48 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 49 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 50 H 0.06 1.98 6.04 -2.39 -0.01 1.96 16 51 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 52 H 0.10 2.42 8.07 -2.39 -0.02 2.40 16 53 H 0.08 2.17 7.06 -2.39 -0.02 2.15 16 54 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -71.47 403.56 1.26 -70.21 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.87 Total: 18.69 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 7.44 Total: 11.36 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -9.03 Total: -129.89 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.04 Total: -18.45 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -71.47 1.26 -70.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941621653.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.223 kcal (2) G-P(sol) polarization free energy of solvation -71.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds