Wall clock time and date at job start Tue Mar 31 2020 19:49:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08999 * 110.64668 * 2 1
4 4 C 1.54596 * 110.72082 * 123.14972 * 2 1 3
5 5 C 1.54004 * 105.13654 * 140.31445 * 4 2 1
6 6 N 1.47906 * 107.05688 * 1.22546 * 5 4 2
7 7 C 1.46896 * 110.99566 * 214.15558 * 6 5 4
8 8 C 1.50704 * 109.46820 * 176.64134 * 7 6 5
9 9 O 1.21285 * 120.00001 * 6.06546 * 8 7 6
10 10 N 1.34782 * 120.00055 * 186.07179 * 8 7 6
11 11 C 1.43504 * 122.54803 * 359.97091 * 10 8 7
12 12 C 1.51726 * 114.25705 * 122.96736 * 11 10 8
13 13 C 1.51159 * 111.88846 * 82.65148 * 12 11 10
14 14 H 1.08996 * 110.22842 * 33.67957 * 13 12 11
15 15 C 1.53395 * 110.93096 * 156.75265 * 13 12 11
16 16 N 1.46602 * 108.10585 * 102.75426 * 15 13 12
17 17 C 1.36939 * 125.31968 * 178.59905 * 16 15 13
18 18 H 1.08008 * 119.99887 * 359.97438 * 17 16 15
19 19 C 1.38813 * 120.00698 * 180.02562 * 17 16 15
20 20 N 1.31624 * 119.99450 * 359.97438 * 19 17 16
21 21 Si 1.86794 * 120.00434 * 179.97438 * 19 17 16
22 22 H 1.48507 * 109.47000 * 359.97438 * 21 19 17
23 23 H 1.48498 * 109.47231 * 119.99607 * 21 19 17
24 24 H 1.48491 * 109.47026 * 239.99906 * 21 19 17
25 25 C 1.46656 * 109.36732 * 358.64337 * 16 15 13
26 26 C 1.54044 * 106.94001 * 18.27425 * 25 16 15
27 27 H 1.09005 * 111.48029 * 91.56831 * 26 25 16
28 28 C 1.51845 * 109.44713 * 214.15452 * 26 25 16
29 29 C 1.49547 * 122.55090 * 180.02562 * 10 8 7
30 30 C 1.48541 * 105.81813 * 334.66789 * 6 5 4
31 31 H 1.08997 * 109.47325 * 298.30489 * 1 2 3
32 32 H 1.08998 * 109.47151 * 58.30028 * 1 2 3
33 33 H 1.08996 * 109.47378 * 178.30096 * 1 2 3
34 34 H 1.08995 * 110.31188 * 21.40268 * 4 2 1
35 35 H 1.08991 * 110.31092 * 259.22911 * 4 2 1
36 36 H 1.08994 * 109.91637 * 241.87124 * 5 4 2
37 37 H 1.08997 * 109.91626 * 120.57602 * 5 4 2
38 38 H 1.08999 * 109.47400 * 56.64573 * 7 6 5
39 39 H 1.08998 * 109.47230 * 296.63883 * 7 6 5
40 40 H 1.09001 * 108.53239 * 244.20251 * 11 10 8
41 41 H 1.08999 * 108.53254 * 1.88723 * 11 10 8
42 42 H 1.09004 * 108.99755 * 203.26899 * 12 11 10
43 43 H 1.08999 * 108.99746 * 322.02940 * 12 11 10
44 44 H 1.08998 * 109.74361 * 222.41746 * 15 13 12
45 45 H 1.08994 * 109.74961 * 343.08192 * 15 13 12
46 46 H 0.97001 * 119.99813 * 180.02562 * 20 19 17
47 47 H 1.09000 * 109.97018 * 258.90287 * 25 16 15
48 48 H 1.09004 * 109.97144 * 137.64803 * 25 16 15
49 49 H 1.09000 * 109.01009 * 295.53546 * 28 26 25
50 50 H 1.09005 * 109.00326 * 54.31023 * 28 26 25
51 51 H 1.08996 * 110.26585 * 131.20673 * 29 10 8
52 52 H 1.08994 * 110.38919 * 9.16793 * 29 10 8
53 53 H 1.09005 * 110.66141 * 157.64468 * 30 6 5
54 54 H 1.09000 * 110.66560 * 280.77410 * 30 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9144 1.0200 0.0000
4 6 2.0770 -0.7907 1.2106
5 6 3.2893 -1.5698 0.6675
6 7 3.4318 -1.2105 -0.7602
7 6 3.9211 -2.3525 -1.5440
8 6 3.9750 -1.9748 -3.0019
9 8 3.7451 -0.8334 -3.3416
10 7 4.2785 -2.9054 -3.9284
11 6 4.5603 -4.2707 -3.5879
12 6 3.6634 -5.2827 -4.2761
13 6 4.1439 -5.6034 -5.6730
14 1 5.2324 -5.5661 -5.7150
15 6 3.6283 -6.9744 -6.1285
16 7 2.5093 -6.7571 -7.0503
17 6 1.8062 -7.7438 -7.6885
18 1 2.0640 -8.7804 -7.5285
19 6 0.7629 -7.4119 -8.5418
20 7 0.4490 -6.1487 -8.7371
21 14 -0.1956 -8.7579 -9.4129
22 1 0.3511 -10.0837 -9.0273
23 1 -1.6261 -8.6792 -9.0220
24 1 -0.0735 -8.5809 -10.8821
25 6 2.2610 -5.3178 -7.1831
26 6 3.5296 -4.5962 -6.6903
27 1 4.2242 -4.4063 -7.5086
28 6 3.1396 -3.2957 -6.0103
29 6 4.3483 -2.5936 -5.3893
30 6 2.0782 -0.7966 -1.2105
31 1 -0.3634 0.4873 0.9048
32 1 -0.3633 0.5400 -0.8743
33 1 -0.3634 -1.0272 -0.0305
34 1 1.3208 -1.4806 1.5848
35 1 2.3895 -0.1065 1.9994
36 1 3.1161 -2.6415 0.7652
37 1 4.1886 -1.2851 1.2136
38 1 3.2470 -3.1989 -1.4127
39 1 4.9193 -2.6265 -1.2026
40 1 5.5949 -4.4876 -3.8538
41 1 4.4488 -4.3890 -2.5101
42 1 3.6464 -6.1999 -3.6874
43 1 2.6521 -4.8801 -4.3323
44 1 4.4249 -7.5166 -6.6379
45 1 3.2883 -7.5456 -5.2647
46 1 -0.2803 -5.9167 -9.3331
47 1 1.4069 -5.0293 -6.5704
48 1 2.0721 -5.0673 -8.2270
49 1 2.6834 -2.6333 -6.7460
50 1 2.4117 -3.5089 -5.2274
51 1 5.2722 -2.9848 -5.8152
52 1 4.2846 -1.5176 -5.5514
53 1 2.1444 -0.1593 -2.0924
54 1 1.4559 -1.6689 -1.4107
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000946779010.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:49:43
Heat of formation + Delta-G solvation = -17.412124 kcal
Electronic energy + Delta-G solvation = -30640.118964 eV
Core-core repulsion = 26804.576373 eV
Total energy + Delta-G solvation = -3835.542591 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.62882 -40.38001 -39.23828 -37.25083 -34.91854 -34.44742 -33.52703 -32.40993
-30.81503 -29.50829 -28.87601 -28.08194 -26.36746 -25.62431 -24.25974 -23.61081
-22.08875 -21.95469 -21.09257 -20.27924 -19.67414 -18.93278 -18.31060 -17.23349
-16.96858 -16.83469 -16.78218 -16.02326 -15.89950 -15.77165 -15.25567 -14.93137
-14.75106 -14.52698 -14.43120 -14.22623 -13.90401 -13.85778 -13.68814 -13.55999
-13.35866 -13.07974 -13.04913 -12.84674 -12.79502 -12.72989 -12.47424 -12.34838
-12.26689 -12.07216 -11.82653 -11.81857 -11.74795 -11.56721 -11.42808 -11.39325
-11.09021 -11.00566 -10.72214 -10.67470 -9.63294 -9.39007 -8.86534 -7.80338
-5.21732 1.44155 1.45009 1.55474 1.61212 1.92684 2.48380 3.01273
3.31235 3.50277 3.66230 3.70391 3.72391 3.81517 3.85165 3.98360
4.03177 4.09214 4.18268 4.25482 4.27177 4.30372 4.35083 4.48864
4.50389 4.60195 4.66855 4.68897 4.71542 4.74621 4.77435 4.81683
4.84993 4.95313 4.98695 5.02602 5.07430 5.07828 5.12668 5.13716
5.23681 5.24114 5.28367 5.28911 5.39781 5.46596 5.53552 5.62849
5.75260 5.84704 5.86114 5.96102 6.28602 6.56559 7.11944 7.20261
7.82255 8.43377 9.23540
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.016030 B = 0.002613 C = 0.002460
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1746.270504 B =10711.929691 C =11379.518900
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.095 4.095
3 H 0.076 0.924
4 C -0.123 4.123
5 C 0.034 3.966
6 N -0.519 5.519
7 C 0.033 3.967
8 C 0.515 3.485
9 O -0.567 6.567
10 N -0.609 5.609
11 C 0.110 3.890
12 C -0.122 4.122
13 C -0.078 4.078
14 H 0.103 0.897
15 C 0.134 3.866
16 N -0.626 5.626
17 C -0.238 4.238
18 H 0.082 0.918
19 C -0.070 4.070
20 N -0.951 5.951
21 Si 0.978 3.022
22 H -0.264 1.264
23 H -0.294 1.294
24 H -0.292 1.292
25 C 0.179 3.821
26 C -0.095 4.095
27 H 0.073 0.927
28 C -0.113 4.113
29 C 0.124 3.876
30 C 0.039 3.961
31 H 0.072 0.928
32 H 0.050 0.950
33 H 0.053 0.947
34 H 0.077 0.923
35 H 0.084 0.916
36 H 0.057 0.943
37 H 0.091 0.909
38 H 0.077 0.923
39 H 0.131 0.869
40 H 0.089 0.911
41 H 0.100 0.900
42 H 0.087 0.913
43 H 0.044 0.956
44 H 0.024 0.976
45 H 0.026 0.974
46 H 0.244 0.756
47 H -0.024 1.024
48 H 0.046 0.954
49 H 0.052 0.948
50 H 0.055 0.945
51 H 0.101 0.899
52 H 0.078 0.922
53 H 0.068 0.932
54 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.596 8.223 20.915 24.437
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.115 4.115
3 H 0.094 0.906
4 C -0.161 4.161
5 C -0.093 4.093
6 N -0.243 5.243
7 C -0.098 4.098
8 C 0.304 3.696
9 O -0.446 6.446
10 N -0.342 5.342
11 C -0.014 4.014
12 C -0.160 4.160
13 C -0.097 4.097
14 H 0.121 0.879
15 C 0.009 3.991
16 N -0.351 5.351
17 C -0.367 4.367
18 H 0.100 0.900
19 C -0.263 4.263
20 N -0.601 5.601
21 Si 0.807 3.193
22 H -0.188 1.188
23 H -0.221 1.221
24 H -0.219 1.219
25 C 0.054 3.946
26 C -0.115 4.115
27 H 0.092 0.908
28 C -0.151 4.151
29 C 0.002 3.998
30 C -0.088 4.088
31 H 0.091 0.909
32 H 0.069 0.931
33 H 0.072 0.928
34 H 0.096 0.904
35 H 0.103 0.897
36 H 0.076 0.924
37 H 0.109 0.891
38 H 0.095 0.905
39 H 0.149 0.851
40 H 0.107 0.893
41 H 0.118 0.882
42 H 0.106 0.894
43 H 0.063 0.937
44 H 0.042 0.958
45 H 0.043 0.957
46 H 0.054 0.946
47 H -0.006 1.006
48 H 0.064 0.936
49 H 0.071 0.929
50 H 0.074 0.926
51 H 0.119 0.881
52 H 0.096 0.904
53 H 0.086 0.914
54 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges 9.720 9.196 20.588 24.555
hybrid contribution -1.763 -1.379 -1.208 2.543
sum 7.958 7.817 19.380 22.361
Atomic orbital electron populations
1.21754 0.93852 1.01912 1.02321 1.22056 0.95971 0.99426 0.94010
0.90562 1.22491 0.96888 0.99133 0.97539 1.22997 0.99747 0.99091
0.87488 1.64579 1.24365 1.32336 1.03066 1.22283 1.04471 0.93504
0.89547 1.20897 0.75666 0.84485 0.88509 1.90656 1.50177 1.21301
1.82465 1.48105 1.68864 1.09968 1.07241 1.20878 0.99843 0.79593
1.01075 1.21432 0.99517 0.99729 0.95326 1.21786 1.00546 0.92894
0.94459 0.87855 1.21383 0.89303 0.96300 0.92069 1.44549 1.36535
1.02660 1.51387 1.19513 1.09793 0.88268 1.19114 0.89998 1.25665
1.00446 0.98598 1.01566 1.70185 1.31890 1.16517 1.41464 0.85001
0.77838 0.78757 0.77711 1.18831 1.22143 1.21897 1.21114 0.92033
0.82683 0.98758 1.22246 0.97258 0.94310 0.97688 0.90838 1.21708
0.98284 0.95679 0.99447 1.22133 0.98452 1.00345 0.78854 1.23313
0.88257 0.98396 0.98870 0.90906 0.93135 0.92791 0.90429 0.89718
0.92435 0.89078 0.90545 0.85110 0.89259 0.88186 0.89423 0.93703
0.95759 0.95651 0.94611 1.00583 0.93560 0.92939 0.92618 0.88131
0.90388 0.91394 0.94944
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.20 9.15 71.98 0.66 -1.55 16
2 C -0.10 -1.70 3.66 -9.59 -0.04 -1.73 16
3 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
4 C -0.12 -1.63 6.51 31.48 0.20 -1.43 16
5 C 0.03 0.49 6.70 86.45 0.58 1.06 16
6 N -0.52 -10.85 5.11 -887.54 -4.54 -15.38 16
7 C 0.03 0.61 3.76 85.56 0.32 0.93 16
8 C 0.52 13.25 7.39 87.66 0.65 13.89 16
9 O -0.57 -19.28 13.98 -3.04 -0.04 -19.32 16
10 N -0.61 -14.00 2.61 -823.70 -2.15 -16.15 16
11 C 0.11 1.92 5.67 86.52 0.49 2.41 16
12 C -0.12 -2.97 4.77 29.58 0.14 -2.83 16
13 C -0.08 -2.30 2.79 -10.30 -0.03 -2.33 16
14 H 0.10 2.37 7.67 -2.39 -0.02 2.36 16
15 C 0.13 5.22 6.82 86.49 0.59 5.81 16
16 N -0.63 -32.15 3.38 -698.54 -2.36 -34.51 16
17 C -0.24 -13.42 10.25 84.03 0.86 -12.56 16
18 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16
19 C -0.07 -4.06 5.48 84.86 0.47 -3.59 16
20 N -0.95 -58.15 10.16 21.65 0.22 -57.93 16
21 Si 0.98 46.28 29.55 68.60 2.03 48.31 16
22 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16
23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16
24 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16
25 C 0.18 8.93 5.13 86.70 0.44 9.38 16
26 C -0.10 -3.38 2.93 -9.86 -0.03 -3.41 16
27 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16
28 C -0.11 -3.58 4.50 30.20 0.14 -3.44 16
29 C 0.12 3.13 6.17 85.77 0.53 3.66 16
30 C 0.04 0.92 5.03 86.65 0.44 1.36 16
31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
33 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16
34 H 0.08 0.90 7.85 -2.39 -0.02 0.88 16
35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16
36 H 0.06 0.69 7.68 -2.39 -0.02 0.67 16
37 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16
38 H 0.08 1.23 7.38 -2.39 -0.02 1.21 16
39 H 0.13 1.71 8.10 -2.39 -0.02 1.69 16
40 H 0.09 1.22 7.67 -2.39 -0.02 1.20 16
41 H 0.10 1.23 5.95 -2.39 -0.01 1.21 16
42 H 0.09 1.90 7.53 -2.38 -0.02 1.89 16
43 H 0.04 1.40 5.87 -2.39 -0.01 1.39 16
44 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16
45 H 0.03 0.97 7.40 -2.39 -0.02 0.95 16
46 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16
47 H -0.02 -1.33 7.72 -2.39 -0.02 -1.35 16
48 H 0.05 2.68 6.19 -2.38 -0.01 2.67 16
49 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16
50 H 0.06 1.97 5.48 -2.38 -0.01 1.95 16
51 H 0.10 2.10 7.81 -2.39 -0.02 2.09 16
52 H 0.08 2.16 7.32 -2.39 -0.02 2.14 16
53 H 0.07 2.04 6.43 -2.38 -0.02 2.03 16
54 H 0.03 0.78 7.90 -2.39 -0.02 0.77 16
Total: -1.00 -74.00 394.16 0.43 -73.57
By element:
Atomic # 1 Polarization: 14.93 SS G_CDS: 0.86 Total: 15.79 kcal
Atomic # 6 Polarization: -0.78 SS G_CDS: 6.41 Total: 5.63 kcal
Atomic # 7 Polarization: -115.15 SS G_CDS: -8.83 Total: -123.98 kcal
Atomic # 8 Polarization: -19.28 SS G_CDS: -0.04 Total: -19.32 kcal
Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal
Total: -74.00 0.43 -73.57 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000946779010.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.158 kcal
(2) G-P(sol) polarization free energy of solvation -74.002 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.844 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.412 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds