Wall clock time and date at job start Tue Mar 31 2020 19:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 110.73210 * 2 1 4 4 C 1.54936 * 110.66954 * 236.90136 * 2 1 3 5 5 C 1.54594 * 102.92364 * 204.15582 * 4 2 1 6 6 C 1.53992 * 105.14022 * 21.95614 * 5 4 2 7 7 N 1.47897 * 107.05622 * 1.22633 * 6 5 4 8 8 C 1.46901 * 110.99730 * 214.15076 * 7 6 5 9 9 C 1.50691 * 109.47530 * 294.12224 * 8 7 6 10 10 O 1.21280 * 120.00362 * 353.35959 * 9 8 7 11 11 N 1.34780 * 120.00426 * 173.35697 * 9 8 7 12 12 C 1.49729 * 122.74931 * 0.02562 * 11 9 8 13 13 C 1.53170 * 105.60074 * 111.59141 * 12 11 9 14 14 C 1.50961 * 111.95772 * 99.82743 * 13 12 11 15 15 H 1.08995 * 109.51889 * 58.25565 * 14 13 12 16 16 C 1.53585 * 111.30502 * 178.51403 * 14 13 12 17 17 N 1.47171 * 105.65292 * 150.29935 * 16 14 13 18 18 C 1.36934 * 126.10648 * 149.71570 * 17 16 14 19 19 H 1.08002 * 119.99529 * 345.07872 * 18 17 16 20 20 C 1.38808 * 120.00100 * 165.07347 * 18 17 16 21 21 N 1.31613 * 120.00209 * 353.18092 * 20 18 17 22 22 Si 1.86804 * 119.99775 * 173.17554 * 20 18 17 23 23 H 1.48502 * 109.47052 * 90.00259 * 22 20 18 24 24 H 1.48504 * 109.47246 * 210.00134 * 22 20 18 25 25 H 1.48499 * 109.47218 * 330.00389 * 22 20 18 26 26 C 1.46780 * 107.79850 * 329.73686 * 17 16 14 27 27 C 1.53837 * 107.90799 * 20.29040 * 26 17 16 28 28 H 1.09003 * 111.00577 * 117.83086 * 27 26 17 29 29 C 1.51856 * 109.23708 * 241.13608 * 27 26 17 30 30 C 1.43641 * 122.76266 * 179.97438 * 11 9 8 31 31 H 1.09001 * 109.47015 * 296.90528 * 1 2 3 32 32 H 1.09002 * 109.47103 * 56.90245 * 1 2 3 33 33 H 1.08997 * 109.47685 * 176.90455 * 1 2 3 34 34 H 1.08995 * 110.72550 * 85.79198 * 4 2 1 35 35 H 1.09004 * 110.87791 * 322.58638 * 4 2 1 36 36 H 1.09002 * 110.30822 * 263.03724 * 5 4 2 37 37 H 1.09000 * 110.30952 * 140.87558 * 5 4 2 38 38 H 1.08995 * 109.91710 * 241.86830 * 6 5 4 39 39 H 1.09003 * 109.91712 * 120.57921 * 6 5 4 40 40 H 1.09000 * 109.46944 * 174.11551 * 8 7 6 41 41 H 1.09008 * 109.46823 * 54.12447 * 8 7 6 42 42 H 1.09000 * 110.21787 * 352.56909 * 12 11 9 43 43 H 1.09009 * 110.20748 * 230.60639 * 12 11 9 44 44 H 1.09001 * 108.97789 * 339.19177 * 13 12 11 45 45 H 1.09000 * 108.98251 * 220.47118 * 13 12 11 46 46 H 1.09007 * 110.21241 * 269.34151 * 16 14 13 47 47 H 1.09000 * 110.21702 * 31.25000 * 16 14 13 48 48 H 0.97005 * 120.00202 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.77916 * 260.68201 * 26 17 16 50 50 H 1.09001 * 109.78104 * 139.89610 * 26 17 16 51 51 H 1.09010 * 108.91126 * 320.66535 * 29 27 26 52 52 H 1.09000 * 108.91883 * 79.20448 * 29 27 26 53 53 H 1.09001 * 108.42208 * 116.61052 * 30 11 9 54 54 H 1.09007 * 108.28776 * 359.25661 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0768 -0.7916 -1.2144 5 6 3.4852 -1.2198 -0.7421 6 6 3.4277 -1.1648 0.7957 7 7 2.0541 -0.7589 1.1643 8 6 2.0579 0.0719 2.3758 9 6 2.5188 -0.7534 3.5494 10 8 2.6993 -1.9455 3.4189 11 7 2.7304 -0.1667 4.7442 12 6 2.5266 1.2987 4.9745 13 6 1.3136 1.4048 5.9037 14 6 1.7207 1.6260 7.3404 15 1 2.3176 2.5350 7.4140 16 6 0.4933 1.7668 8.2529 17 7 0.9158 1.2588 9.5679 18 6 0.4440 1.6762 10.7838 19 1 -0.1177 2.5957 10.8583 20 6 0.6876 0.9176 11.9204 21 7 1.2532 -0.2659 11.8130 22 14 0.2129 1.5767 13.6026 23 1 -1.1756 1.1593 13.9239 24 1 1.1420 1.0352 14.6267 25 1 0.2947 3.0594 13.5945 26 6 1.9335 0.2252 9.3438 27 6 2.5168 0.4331 7.9355 28 1 3.5821 0.6591 7.9833 29 6 2.2481 -0.8029 7.0952 30 6 3.1690 -0.8959 5.9014 31 1 -0.3633 0.4650 0.9164 32 1 -0.3633 0.5612 -0.8609 33 1 -0.3634 -1.0261 -0.0555 34 1 2.1430 -0.1514 -2.0940 35 1 1.4571 -1.6644 -1.4202 36 1 4.2374 -0.5260 -1.1177 37 1 3.7043 -2.2338 -1.0766 38 1 4.1440 -0.4324 1.1681 39 1 3.6484 -2.1482 1.2110 40 1 1.0505 0.4425 2.5653 41 1 2.7348 0.9148 2.2362 42 1 2.3230 1.8037 4.0302 43 1 3.4060 1.7307 5.4523 44 1 0.7343 0.4839 5.8370 45 1 0.6903 2.2382 5.5793 46 1 0.1997 2.8138 8.3302 47 1 -0.3335 1.1707 7.8667 48 1 1.4238 -0.7959 12.6073 49 1 1.4774 -0.7625 9.4119 50 1 2.7244 0.3187 10.0880 51 1 2.3837 -1.6886 7.7161 52 1 1.2166 -0.7742 6.7442 53 1 4.1501 -0.5212 6.1933 54 1 3.2707 -1.9457 5.6260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946779024.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:30 Heat of formation + Delta-G solvation = -19.664226 kcal Electronic energy + Delta-G solvation = -30467.768855 eV Core-core repulsion = 26632.128605 eV Total energy + Delta-G solvation = -3835.640250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.59242 -40.36466 -39.26056 -37.18441 -34.82523 -33.87122 -33.03723 -32.47609 -32.24917 -29.51480 -28.78247 -27.52076 -26.37261 -25.86404 -24.09567 -23.60694 -22.14910 -21.93133 -21.15947 -20.17866 -19.68036 -18.86600 -18.13119 -17.44625 -16.99038 -16.66595 -16.57579 -16.22954 -15.99669 -15.54084 -15.23726 -15.14686 -14.71713 -14.61875 -14.37281 -14.20040 -13.96896 -13.79266 -13.71466 -13.31216 -13.19294 -13.09750 -12.97610 -12.83053 -12.73169 -12.57209 -12.39500 -12.29566 -12.21222 -12.07017 -12.01795 -11.83947 -11.74910 -11.59355 -11.43304 -11.29084 -11.23655 -10.97352 -10.72782 -10.68244 -9.63826 -9.32597 -8.84323 -7.89499 -5.26466 1.44188 1.46020 1.55235 1.64636 1.94595 2.48436 2.99873 3.29713 3.44587 3.67082 3.70770 3.75165 3.88251 3.93246 3.99631 4.05468 4.08441 4.20455 4.23713 4.25757 4.33975 4.39896 4.50463 4.54547 4.59602 4.66882 4.68523 4.71534 4.79419 4.81407 4.89782 4.91876 4.94644 4.98547 5.01093 5.06783 5.12367 5.13839 5.17631 5.24542 5.27202 5.31479 5.33684 5.43938 5.46260 5.57593 5.59728 5.75581 5.78701 5.95692 6.06395 6.21579 6.50600 7.08457 7.24800 7.77249 8.46296 9.22938 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.030889 B = 0.002251 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.242451 B =12435.903191 C =12885.593980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.059 3.941 3 H 0.070 0.930 4 C -0.115 4.115 5 C -0.129 4.129 6 C 0.041 3.959 7 N -0.521 5.521 8 C 0.037 3.963 9 C 0.516 3.484 10 O -0.572 6.572 11 N -0.609 5.609 12 C 0.113 3.887 13 C -0.122 4.122 14 C -0.081 4.081 15 H 0.080 0.920 16 C 0.132 3.868 17 N -0.623 5.623 18 C -0.244 4.244 19 H 0.081 0.919 20 C -0.067 4.067 21 N -0.949 5.949 22 Si 0.978 3.022 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.266 1.266 26 C 0.187 3.813 27 C -0.091 4.091 28 H 0.084 0.916 29 C -0.111 4.111 30 C 0.122 3.878 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.056 0.944 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.049 0.951 47 H 0.007 0.993 48 H 0.247 0.753 49 H -0.006 1.006 50 H 0.011 0.989 51 H 0.053 0.947 52 H 0.059 0.941 53 H 0.072 0.928 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 6.210 -28.057 29.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 H 0.088 0.912 4 C -0.153 4.153 5 C -0.167 4.167 6 C -0.087 4.087 7 N -0.246 5.246 8 C -0.093 4.093 9 C 0.305 3.695 10 O -0.451 6.451 11 N -0.343 5.343 12 C -0.008 4.008 13 C -0.161 4.161 14 C -0.100 4.100 15 H 0.098 0.902 16 C 0.007 3.993 17 N -0.348 5.348 18 C -0.373 4.373 19 H 0.098 0.902 20 C -0.260 4.260 21 N -0.598 5.598 22 Si 0.806 3.194 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.190 1.190 26 C 0.062 3.938 27 C -0.110 4.110 28 H 0.102 0.898 29 C -0.150 4.150 30 C -0.003 4.003 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.138 0.862 41 H 0.107 0.893 42 H 0.136 0.864 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.067 0.933 47 H 0.025 0.975 48 H 0.056 0.944 49 H 0.012 0.988 50 H 0.030 0.970 51 H 0.072 0.928 52 H 0.077 0.923 53 H 0.091 0.909 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.066 5.055 -27.824 28.570 hybrid contribution 0.158 0.132 1.906 1.917 sum 4.224 5.187 -25.918 26.767 Atomic orbital electron populations 1.21695 0.93238 1.02040 1.02343 1.22910 0.96430 0.96151 0.89296 0.91227 1.22532 0.95367 1.00203 0.97223 1.22408 0.98261 1.02518 0.93494 1.22777 0.88962 1.00485 0.96451 1.64450 1.20098 1.37633 1.02450 1.22191 1.04158 0.94365 0.88626 1.20981 0.76448 0.87941 0.84088 1.90675 1.52901 1.17378 1.84119 1.48174 1.66942 1.10505 1.08658 1.22652 0.98633 0.78514 1.00996 1.21674 0.98578 1.03122 0.92689 1.21696 0.96053 0.97916 0.94381 0.90199 1.21520 0.95439 0.96933 0.85430 1.44677 1.44424 1.44333 1.01375 1.19419 1.29723 1.03575 0.84584 0.90172 1.25787 1.01905 0.96242 1.02065 1.70175 1.49361 1.11965 1.28252 0.85093 0.77095 0.78130 0.79087 1.21266 1.22092 1.19036 1.20844 0.90029 0.90378 0.92565 1.22072 0.99521 0.95183 0.94234 0.89820 1.21337 1.00211 0.97645 0.95773 1.20237 0.97223 0.97462 0.85362 0.92631 0.90361 0.93241 0.88937 0.91414 0.89996 0.91216 0.93978 0.92574 0.86155 0.89305 0.86354 0.88801 0.92324 0.88706 0.93308 0.97513 0.94410 0.98784 0.97039 0.92794 0.92281 0.90940 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.50 71.98 0.68 -0.95 16 2 C 0.06 0.77 2.92 45.26 0.13 0.90 16 3 H 0.07 0.69 8.02 -2.39 -0.02 0.67 16 4 C -0.12 -1.35 6.50 31.80 0.21 -1.14 16 5 C -0.13 -1.73 6.93 31.47 0.22 -1.52 16 6 C 0.04 0.79 5.66 86.45 0.49 1.28 16 7 N -0.52 -10.03 4.68 -862.83 -4.04 -14.07 16 8 C 0.04 0.63 3.78 85.55 0.32 0.96 16 9 C 0.52 12.94 7.43 87.65 0.65 13.60 16 10 O -0.57 -19.69 14.59 -3.03 -0.04 -19.73 16 11 N -0.61 -13.82 2.67 -823.75 -2.20 -16.02 16 12 C 0.11 1.78 6.16 85.81 0.53 2.31 16 13 C -0.12 -2.58 4.57 29.99 0.14 -2.45 16 14 C -0.08 -2.40 2.61 -10.48 -0.03 -2.43 16 15 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 16 C 0.13 5.24 6.71 86.45 0.58 5.82 16 17 N -0.62 -32.33 3.37 -696.81 -2.35 -34.68 16 18 C -0.24 -13.84 10.25 84.03 0.86 -12.97 16 19 H 0.08 4.32 7.84 -2.91 -0.02 4.30 16 20 C -0.07 -3.86 5.42 84.86 0.46 -3.40 16 21 N -0.95 -58.66 10.80 21.65 0.23 -58.43 16 22 Si 0.98 46.24 29.56 68.60 2.03 48.27 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 C 0.19 9.31 4.96 86.61 0.43 9.74 16 27 C -0.09 -3.16 3.12 -10.11 -0.03 -3.20 16 28 H 0.08 2.67 7.80 -2.39 -0.02 2.65 16 29 C -0.11 -3.59 4.52 29.58 0.13 -3.46 16 30 C 0.12 3.30 5.70 86.27 0.49 3.79 16 31 H 0.05 0.67 7.35 -2.39 -0.02 0.65 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.75 8.11 -2.39 -0.02 0.74 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.91 8.03 -2.38 -0.02 0.89 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.04 0.75 7.64 -2.39 -0.02 0.73 16 39 H 0.06 1.45 7.35 -2.39 -0.02 1.43 16 40 H 0.12 1.68 7.29 -2.39 -0.02 1.67 16 41 H 0.09 1.01 7.27 -2.38 -0.02 0.99 16 42 H 0.12 1.02 6.30 -2.39 -0.02 1.00 16 43 H 0.09 1.35 7.85 -2.38 -0.02 1.33 16 44 H 0.06 1.52 5.58 -2.39 -0.01 1.51 16 45 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 47 H 0.01 0.29 7.96 -2.39 -0.02 0.27 16 48 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 49 H -0.01 -0.33 7.02 -2.39 -0.02 -0.35 16 50 H 0.01 0.63 7.39 -2.39 -0.02 0.61 16 51 H 0.05 1.94 7.66 -2.38 -0.02 1.92 16 52 H 0.06 2.04 5.78 -2.39 -0.01 2.02 16 53 H 0.07 1.77 7.72 -2.39 -0.02 1.75 16 54 H 0.06 1.93 6.99 -2.38 -0.02 1.91 16 Total: -1.00 -76.19 395.98 0.76 -75.43 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.86 Total: 12.35 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 6.27 Total: 6.87 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -8.35 Total: -123.19 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.04 Total: -19.73 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -76.19 0.76 -75.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946779024.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.763 kcal (2) G-P(sol) polarization free energy of solvation -76.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds