Wall clock time and date at job start Tue Mar 31 2020 19:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.58519 * 2 1 4 4 C 1.53193 * 109.58473 * 239.57230 * 2 1 3 5 5 C 1.53039 * 109.30946 * 185.57654 * 4 2 1 6 6 H 1.09004 * 109.44671 * 181.37859 * 5 4 2 7 7 N 1.46501 * 109.46372 * 301.34127 * 5 4 2 8 8 C 1.34773 * 120.00576 * 205.06952 * 7 5 4 9 9 O 1.21284 * 119.99448 * 0.02562 * 8 7 5 10 10 C 1.51514 * 120.00322 * 180.02562 * 8 7 5 11 11 C 1.52344 * 108.89328 * 60.44079 * 10 8 7 12 12 C 1.52144 * 112.79193 * 170.67973 * 11 10 8 13 13 C 1.52277 * 112.52480 * 314.93855 * 12 11 10 14 14 N 1.45903 * 112.14072 * 47.33280 * 13 12 11 15 15 C 1.45808 * 113.88195 * 69.90222 * 14 13 12 16 16 C 1.52227 * 112.59271 * 288.60211 * 15 14 13 17 17 C 1.52243 * 112.60666 * 313.54399 * 16 15 14 18 18 C 1.46494 * 111.90761 * 301.35486 * 14 13 12 19 19 C 1.53039 * 109.54032 * 61.36866 * 5 4 2 20 20 C 1.53194 * 109.31004 * 298.63213 * 19 5 4 21 21 N 1.46923 * 109.58878 * 120.28021 * 2 1 3 22 22 C 1.36942 * 120.63223 * 353.42309 * 21 2 1 23 23 H 1.08000 * 119.99703 * 28.99866 * 22 21 2 24 24 C 1.38809 * 120.00151 * 209.00515 * 22 21 2 25 25 N 1.31624 * 120.00031 * 15.01017 * 24 22 21 26 26 Si 1.86795 * 120.00203 * 195.01472 * 24 22 21 27 27 H 1.48504 * 109.47094 * 59.99907 * 26 24 22 28 28 H 1.48496 * 109.47246 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47338 * 299.99782 * 26 24 22 30 30 H 1.09011 * 109.46838 * 299.71668 * 1 2 3 31 31 H 1.08998 * 109.47539 * 59.71418 * 1 2 3 32 32 H 1.08995 * 109.47212 * 179.71850 * 1 2 3 33 33 H 1.09002 * 109.49293 * 65.62813 * 4 2 1 34 34 H 1.08994 * 109.49506 * 305.52965 * 4 2 1 35 35 H 0.97010 * 119.99566 * 25.07114 * 7 5 4 36 36 H 1.09734 * 109.11308 * 292.24742 * 11 10 8 37 37 H 1.09760 * 109.03751 * 49.26753 * 11 10 8 38 38 H 1.08672 * 110.95541 * 79.70214 * 12 11 10 39 39 H 1.10544 * 108.06549 * 195.87455 * 12 11 10 40 40 H 1.09620 * 109.13103 * 286.16811 * 13 12 11 41 41 H 1.09588 * 109.19867 * 168.65471 * 13 12 11 42 42 H 1.09685 * 109.20078 * 49.91404 * 15 14 13 43 43 H 1.09682 * 109.22591 * 167.22394 * 15 14 13 44 44 H 1.10582 * 107.86404 * 194.57745 * 16 15 14 45 45 H 1.08655 * 110.95875 * 78.54566 * 16 15 14 46 46 H 1.09621 * 109.31582 * 284.57188 * 17 16 15 47 47 H 1.09640 * 109.24103 * 166.93204 * 17 16 15 48 48 H 1.08866 * 109.92929 * 184.34528 * 18 14 13 49 49 H 1.08849 * 109.97363 * 305.48532 * 18 14 13 50 50 H 1.08994 * 109.49793 * 58.57866 * 19 5 4 51 51 H 1.09000 * 109.49975 * 178.68319 * 19 5 4 52 52 H 1.08998 * 109.58465 * 174.42602 * 20 19 5 53 53 H 1.09000 * 109.58740 * 294.84846 * 20 19 5 54 54 H 0.97000 * 120.00291 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7310 -1.2445 5 6 3.5674 -0.8494 -1.1691 6 1 3.9375 -1.3475 -2.0652 7 7 4.1570 0.4885 -1.0757 8 6 5.4206 0.6989 -1.4945 9 8 6.0695 -0.2194 -1.9493 10 6 6.0305 2.0824 -1.3974 11 6 6.0499 2.5114 0.0643 12 6 6.8463 3.7874 0.2935 13 6 8.1797 3.7829 -0.4420 14 7 8.0394 3.3625 -1.8321 15 6 7.3473 4.3306 -2.6746 16 6 5.8586 4.4141 -2.3679 17 6 5.2075 3.0430 -2.2506 18 6 7.4615 2.0208 -1.9418 19 6 3.9569 -1.6656 0.0655 20 6 3.4651 -0.9453 1.3249 21 7 2.0226 -0.6980 1.1954 22 6 1.1537 -1.1108 2.1700 23 1 0.1361 -1.3657 1.9135 24 6 1.5809 -1.2014 3.4876 25 7 2.7040 -0.6227 3.8567 26 14 0.5619 -2.1448 4.7370 27 1 0.4327 -3.5593 4.3037 28 1 1.2307 -2.0926 6.0619 29 1 -0.7873 -1.5330 4.8387 30 1 -0.3633 0.5095 0.8926 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3633 -1.0276 -0.0050 33 1 1.7659 -0.1694 -2.1366 34 1 1.6029 -1.7269 -1.2891 35 1 3.6379 1.2230 -0.7122 36 1 5.0189 2.6625 0.4082 37 1 6.4824 1.7038 0.6688 38 1 6.2617 4.6637 0.0267 39 1 7.0551 3.8714 1.3758 40 1 8.8713 3.1053 0.0720 41 1 8.6126 4.7891 -0.4095 42 1 7.7986 5.3202 -2.5325 43 1 7.4821 4.0546 -3.7275 44 1 5.3702 4.9524 -3.2013 45 1 5.6784 5.0068 -1.4752 46 1 5.0803 2.6151 -3.2518 47 1 4.2114 3.1529 -1.8057 48 1 7.4424 1.7091 -2.9847 49 1 8.0463 1.3150 -1.3546 50 1 3.4983 -2.6527 0.0086 51 1 5.0412 -1.7694 0.1058 52 1 3.6519 -1.5689 2.1990 53 1 3.9903 0.0039 1.4316 54 1 3.0027 -0.6863 4.7773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947437224.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:31 Heat of formation + Delta-G solvation = -41.966782 kcal Electronic energy + Delta-G solvation = -32101.112760 eV Core-core repulsion = 28264.505399 eV Total energy + Delta-G solvation = -3836.607361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.21849 -40.47232 -38.97677 -35.92940 -34.70395 -34.04495 -33.99300 -32.65685 -31.78806 -31.17784 -28.01899 -27.36968 -26.86081 -25.28467 -24.24851 -23.72954 -22.44331 -22.31539 -21.69175 -20.22925 -19.47737 -18.38323 -18.16921 -17.14057 -16.88080 -16.59314 -16.17966 -16.01004 -15.76630 -15.63853 -15.48670 -15.37457 -14.95215 -14.74547 -14.40243 -14.17022 -14.07497 -13.95169 -13.60872 -13.46053 -13.34001 -13.18220 -12.83643 -12.68089 -12.52037 -12.51758 -12.43311 -12.37421 -12.32622 -12.19440 -12.00033 -11.95805 -11.86971 -11.72970 -11.65544 -11.42608 -11.01048 -10.76404 -10.59844 -10.50068 -9.99684 -9.03099 -8.60277 -7.82859 -5.28146 1.46090 1.48919 1.54091 1.64735 2.23020 2.52411 3.04270 3.32582 3.48527 3.59315 3.61738 3.62644 3.90333 3.96541 4.04388 4.08169 4.11480 4.17556 4.20461 4.24713 4.40233 4.41677 4.47757 4.53426 4.57667 4.65362 4.68406 4.76908 4.81118 4.91293 4.94126 4.95609 4.96843 4.99890 5.02836 5.06733 5.08648 5.09544 5.10681 5.15257 5.16457 5.28099 5.39591 5.45904 5.52254 5.54418 5.60797 5.72481 5.75785 6.15554 6.39126 6.43639 6.57523 7.18946 7.25458 7.91446 8.42569 9.22971 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.003491 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.108637 B = 8019.018319 C = 8554.070977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.162 3.838 3 H 0.022 0.978 4 C -0.124 4.124 5 C 0.159 3.841 6 H 0.075 0.925 7 N -0.705 5.705 8 C 0.519 3.481 9 O -0.582 6.582 10 C -0.093 4.093 11 C -0.097 4.097 12 C -0.145 4.145 13 C 0.065 3.935 14 N -0.549 5.549 15 C 0.063 3.937 16 C -0.147 4.147 17 C -0.098 4.098 18 C 0.098 3.902 19 C -0.142 4.142 20 C 0.192 3.808 21 N -0.600 5.600 22 C -0.249 4.249 23 H 0.076 0.924 24 C -0.051 4.051 25 N -0.936 5.936 26 Si 0.958 3.042 27 H -0.282 1.282 28 H -0.300 1.300 29 H -0.274 1.274 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.403 0.597 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.041 0.959 52 H 0.045 0.955 53 H -0.001 1.001 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.506 12.281 -13.881 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 H 0.039 0.961 4 C -0.164 4.164 5 C 0.054 3.946 6 H 0.093 0.907 7 N -0.355 5.355 8 C 0.305 3.695 9 O -0.462 6.462 10 C -0.098 4.098 11 C -0.135 4.135 12 C -0.184 4.184 13 C -0.063 4.063 14 N -0.270 5.270 15 C -0.064 4.064 16 C -0.186 4.186 17 C -0.136 4.136 18 C -0.031 4.031 19 C -0.182 4.182 20 C 0.066 3.934 21 N -0.324 5.324 22 C -0.379 4.379 23 H 0.093 0.907 24 C -0.246 4.246 25 N -0.582 5.582 26 Si 0.787 3.213 27 H -0.209 1.209 28 H -0.226 1.226 29 H -0.200 1.200 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.240 0.760 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.060 0.940 52 H 0.064 0.936 53 H 0.017 0.983 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.448 11.632 -14.222 19.471 hybrid contribution -1.373 -0.705 1.954 2.491 sum 5.075 10.927 -12.267 17.194 Atomic orbital electron populations 1.21742 0.94469 1.01444 1.01131 1.20626 0.94346 0.93013 0.86397 0.96061 1.22230 0.92777 1.02424 0.98944 1.20751 0.93893 0.82934 0.97038 0.90720 1.46118 1.14369 1.11919 1.63114 1.21255 0.81307 0.90931 0.75960 1.90636 1.61729 1.46080 1.47768 1.21246 0.99062 0.91543 0.97906 1.21196 1.01084 0.98361 0.92853 1.21942 0.97847 0.96770 1.01795 1.21851 0.95443 1.02351 0.86621 1.60285 1.53716 1.02230 1.10732 1.21875 0.91199 0.96170 0.97193 1.21962 0.97346 0.95439 1.03819 1.21316 0.98245 0.95023 0.98969 1.21613 0.89931 0.90527 1.01013 1.22375 0.98908 0.99449 0.97475 1.20348 0.83519 0.95560 0.94021 1.44328 1.02576 1.65805 1.19706 1.19470 0.95239 1.36505 0.86719 0.90686 1.25736 0.98956 1.01140 0.98781 1.70160 1.25036 1.46447 1.16582 0.85485 0.78515 0.79059 0.78262 1.20867 1.22636 1.19993 0.94028 0.90484 0.93212 0.89261 0.90748 0.76021 0.92222 0.94250 0.89818 0.91548 0.91745 0.88624 0.89042 0.90738 0.90019 0.90692 0.91801 0.91283 0.90684 0.92118 0.92144 0.94013 0.93639 0.98344 0.94575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.94 71.98 0.57 -3.73 16 2 C 0.16 5.92 3.19 44.98 0.14 6.06 16 3 H 0.02 0.79 6.65 -2.38 -0.02 0.77 16 4 C -0.12 -3.80 5.07 30.67 0.16 -3.64 16 5 C 0.16 5.35 2.78 45.02 0.13 5.47 16 6 H 0.07 2.54 7.58 -2.39 -0.02 2.52 16 7 N -0.70 -22.04 4.07 -441.47 -1.80 -23.84 16 8 C 0.52 16.60 6.32 87.92 0.56 17.16 16 9 O -0.58 -22.58 15.58 -3.04 -0.05 -22.63 16 10 C -0.09 -2.30 0.57 -52.95 -0.03 -2.33 16 11 C -0.10 -2.48 4.50 30.09 0.14 -2.34 16 12 C -0.14 -2.81 5.13 30.07 0.15 -2.66 16 13 C 0.07 1.18 5.77 86.25 0.50 1.68 16 14 N -0.55 -10.93 4.79 -902.09 -4.32 -15.25 16 15 C 0.06 0.95 5.76 86.25 0.50 1.45 16 16 C -0.15 -2.13 5.12 30.09 0.15 -1.98 16 17 C -0.10 -1.89 4.53 30.20 0.14 -1.76 16 18 C 0.10 2.47 4.18 86.46 0.36 2.83 16 19 C -0.14 -5.76 5.77 30.67 0.18 -5.58 16 20 C 0.19 9.20 5.03 86.36 0.43 9.64 16 21 N -0.60 -28.20 2.99 -675.23 -2.02 -30.21 16 22 C -0.25 -12.98 8.60 84.03 0.72 -12.26 16 23 H 0.08 3.76 6.21 -2.91 -0.02 3.74 16 24 C -0.05 -2.80 4.96 84.86 0.42 -2.37 16 25 N -0.94 -54.71 11.14 21.65 0.24 -54.47 16 26 Si 0.96 44.49 29.58 68.60 2.03 46.52 16 27 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 28 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 29 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 30 H 0.04 1.53 7.62 -2.38 -0.02 1.51 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.05 1.68 7.44 -2.39 -0.02 1.66 16 33 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.40 12.02 5.98 -92.70 -0.55 11.46 16 36 H 0.06 1.61 7.81 -2.00 -0.02 1.60 16 37 H 0.04 1.21 8.14 -1.98 -0.02 1.20 16 38 H 0.08 1.39 5.68 -2.56 -0.01 1.38 16 39 H 0.07 1.29 8.27 -1.56 -0.01 1.28 16 40 H 0.06 1.28 8.19 -2.06 -0.02 1.26 16 41 H 0.10 1.32 8.10 -2.07 -0.02 1.31 16 42 H 0.09 1.06 8.10 -2.02 -0.02 1.04 16 43 H 0.07 1.10 8.20 -2.02 -0.02 1.08 16 44 H 0.08 0.93 8.27 -1.54 -0.01 0.92 16 45 H 0.07 1.04 5.69 -2.57 -0.01 1.03 16 46 H 0.06 1.27 8.14 -2.06 -0.02 1.25 16 47 H 0.07 1.30 7.80 -2.05 -0.02 1.29 16 48 H 0.07 1.97 8.08 -2.46 -0.02 1.95 16 49 H 0.06 1.78 8.06 -2.47 -0.02 1.76 16 50 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 51 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.05 2.55 6.06 -2.39 -0.01 2.54 16 53 H 0.00 -0.08 7.74 -2.39 -0.02 -0.09 16 54 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -64.70 387.54 -0.35 -65.05 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.35 Total: 29.19 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 5.21 Total: 5.63 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -7.90 Total: -123.77 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -64.70 -0.35 -65.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947437224.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.087 kcal (2) G-P(sol) polarization free energy of solvation -64.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds