Wall clock time and date at job start Tue Mar 31 2020 18:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46616 * 2 1 4 4 C 1.53002 * 109.47029 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47223 * 180.02562 * 4 3 2 6 6 C 1.46845 * 110.99987 * 74.95618 * 5 4 3 7 7 C 1.53043 * 109.51657 * 185.83893 * 6 5 4 8 8 C 1.53116 * 109.28250 * 300.82123 * 7 6 5 9 9 C 1.53116 * 109.16115 * 57.65470 * 8 7 6 10 10 C 1.46848 * 110.99715 * 199.16948 * 5 4 3 11 11 H 1.08994 * 109.45971 * 294.17190 * 10 5 4 12 12 C 1.50701 * 109.46335 * 54.13852 * 10 5 4 13 13 O 1.21288 * 119.99998 * 28.59803 * 12 10 5 14 14 N 1.34774 * 120.00059 * 208.58917 * 12 10 5 15 15 C 1.46502 * 120.00257 * 180.02562 * 14 12 10 16 16 H 1.09002 * 115.51081 * 9.58791 * 15 14 12 17 17 C 1.52990 * 117.44598 * 224.24586 * 15 14 12 18 18 H 1.09004 * 119.54481 * 4.11820 * 17 15 14 19 19 C 1.54385 * 118.12604 * 160.80933 * 17 15 14 20 20 N 1.48148 * 104.61967 * 87.18818 * 19 17 15 21 21 C 1.36941 * 127.83772 * 140.41452 * 20 19 17 22 22 H 1.07996 * 119.99792 * 345.82610 * 21 20 19 23 23 C 1.38813 * 119.99897 * 165.82687 * 21 20 19 24 24 N 1.31626 * 119.99842 * 350.60536 * 23 21 20 25 25 Si 1.86800 * 120.00137 * 170.60813 * 23 21 20 26 26 H 1.48490 * 109.47272 * 94.82245 * 25 23 21 27 27 H 1.48501 * 109.46765 * 214.82592 * 25 23 21 28 28 H 1.48504 * 109.46848 * 334.81987 * 25 23 21 29 29 C 1.51831 * 104.55112 * 320.14540 * 20 19 17 30 30 C 1.52999 * 117.44508 * 155.00327 * 15 14 12 31 31 H 1.09004 * 119.53564 * 355.88839 * 30 15 14 32 32 H 1.09000 * 109.47319 * 60.00486 * 1 2 3 33 33 H 1.09002 * 109.47087 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47356 * 300.00075 * 1 2 3 35 35 H 1.08994 * 109.47132 * 239.99970 * 2 1 3 36 36 H 1.09000 * 109.47319 * 119.99513 * 2 1 3 37 37 H 1.08994 * 109.47395 * 60.00131 * 3 2 1 38 38 H 1.09003 * 109.47372 * 299.99688 * 3 2 1 39 39 H 1.09003 * 109.47436 * 59.99623 * 4 3 2 40 40 H 1.09003 * 109.46503 * 299.99870 * 4 3 2 41 41 H 1.08996 * 109.46215 * 305.85160 * 6 5 4 42 42 H 1.08999 * 109.46374 * 65.83955 * 6 5 4 43 43 H 1.08996 * 109.50287 * 60.76409 * 7 6 5 44 44 H 1.09003 * 109.49931 * 180.83778 * 7 6 5 45 45 H 1.08992 * 109.52306 * 177.56469 * 8 7 6 46 46 H 1.09006 * 109.52243 * 297.68980 * 8 7 6 47 47 H 1.08998 * 109.50203 * 62.28406 * 9 8 7 48 48 H 1.08996 * 109.50538 * 182.36843 * 9 8 7 49 49 H 0.97002 * 120.00009 * 0.02562 * 14 12 10 50 50 H 1.09002 * 110.41091 * 205.97248 * 19 17 15 51 51 H 1.09002 * 110.40668 * 328.40730 * 19 17 15 52 52 H 0.97001 * 119.99860 * 180.02562 * 24 23 21 53 53 H 1.09000 * 111.95301 * 281.19341 * 29 20 19 54 54 H 1.08997 * 110.53327 * 157.59647 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 7 4.0595 2.8277 0.0000 6 6 3.9000 3.4417 1.3243 7 6 4.2829 4.9216 1.2513 8 6 5.7352 5.0456 0.7822 9 6 5.8850 4.3560 -0.5767 10 6 5.4556 2.8925 -0.4508 11 1 6.0948 2.3876 0.2734 12 6 5.5826 2.2148 -1.7908 13 8 4.6368 2.1894 -2.5496 14 7 6.7473 1.6371 -2.1461 15 6 6.8710 0.9788 -3.4490 16 1 6.0397 1.1374 -4.1359 17 6 7.5662 -0.3834 -3.4876 18 1 7.8839 -0.8514 -2.5557 19 6 7.3222 -1.2907 -4.7126 20 7 8.3439 -0.8696 -5.6993 21 6 9.0765 -1.6636 -6.5408 22 1 9.1129 -2.7310 -6.3807 23 6 9.7723 -1.0964 -7.5996 24 7 9.5840 0.1692 -7.9082 25 14 10.9759 -2.1293 -8.5865 26 1 10.2921 -2.6750 -9.7863 27 1 12.1212 -1.2845 -9.0107 28 1 11.4714 -3.2494 -7.7467 29 6 8.3938 0.6428 -5.5749 30 6 8.2726 0.8666 -4.0522 31 1 9.1163 1.3300 -3.5408 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 1.8934 -0.5137 0.8900 37 1 1.6766 1.9564 0.8899 38 1 1.6766 1.9564 -0.8900 39 1 3.9330 0.9289 -0.8908 40 1 3.9336 0.9287 0.8892 41 1 2.8620 3.3505 1.6442 42 1 4.5467 2.9343 2.0402 43 1 3.6278 5.4326 0.5458 44 1 4.1787 5.3735 2.2377 45 1 5.9987 6.0989 0.6873 46 1 6.3944 4.5692 1.5080 47 1 5.2550 4.8581 -1.3109 48 1 6.9258 4.4042 -0.8965 49 1 7.5037 1.6573 -1.5392 50 1 7.4620 -2.3378 -4.4441 51 1 6.3203 -1.1301 -5.1109 52 1 10.0699 0.5654 -8.6483 53 1 7.5655 1.1221 -6.0966 54 1 9.3467 1.0252 -5.9406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962276040.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:53 Heat of formation + Delta-G solvation = -5.333396 kcal Electronic energy + Delta-G solvation = -29761.479351 eV Core-core repulsion = 25926.460532 eV Total energy + Delta-G solvation = -3835.018818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.58798 -40.27424 -38.84171 -36.55072 -35.96265 -34.36094 -33.88935 -32.51169 -31.57377 -29.55514 -28.92782 -27.67706 -25.85515 -25.02472 -23.56799 -23.03523 -21.98481 -21.74334 -21.50998 -20.82161 -20.56776 -18.86905 -18.25440 -17.78397 -16.85762 -16.62994 -16.55987 -16.07655 -15.72702 -15.50927 -15.35076 -15.13652 -14.84150 -14.64331 -14.47691 -14.32353 -14.17501 -13.81929 -13.72404 -13.47842 -13.32463 -13.19525 -13.17888 -12.91073 -12.73125 -12.41043 -12.22773 -12.15941 -12.06059 -12.04350 -11.89973 -11.82010 -11.77144 -11.63950 -11.60967 -11.42863 -11.13554 -10.89853 -10.76946 -10.60827 -9.71996 -9.26929 -8.94993 -7.91344 -5.26759 1.46583 1.47850 1.49788 1.57960 1.86191 2.48188 2.80743 2.86203 3.28696 3.47731 3.59222 3.79429 3.84585 3.89614 3.92994 3.96011 4.09286 4.10222 4.12036 4.23111 4.29511 4.30027 4.35400 4.38234 4.50221 4.57524 4.61240 4.69954 4.80207 4.80819 4.82040 4.88541 4.93250 4.95296 4.96398 5.00810 5.06572 5.11949 5.20668 5.24291 5.25452 5.29907 5.38332 5.39935 5.43536 5.45426 5.49352 5.52787 5.63753 5.98529 6.11322 6.15670 6.54394 6.94699 7.23128 7.64420 8.43966 9.23083 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.015211 B = 0.002403 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.297017 B =11649.755490 C =13075.696452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.101 4.101 4 C 0.054 3.946 5 N -0.535 5.535 6 C 0.056 3.944 7 C -0.117 4.117 8 C -0.113 4.113 9 C -0.106 4.106 10 C 0.081 3.919 11 H 0.082 0.918 12 C 0.516 3.484 13 O -0.562 6.562 14 N -0.684 5.684 15 C 0.118 3.882 16 H 0.101 0.899 17 C -0.165 4.165 18 H 0.135 0.865 19 C 0.151 3.849 20 N -0.622 5.622 21 C -0.238 4.238 22 H 0.083 0.917 23 C -0.065 4.065 24 N -0.950 5.950 25 Si 0.981 3.019 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.266 1.266 29 C 0.186 3.814 30 C -0.175 4.175 31 H 0.127 0.873 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.055 0.945 48 H 0.083 0.917 49 H 0.416 0.584 50 H 0.063 0.937 51 H 0.014 0.986 52 H 0.250 0.750 53 H 0.003 0.997 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.376 7.709 26.367 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.139 4.139 4 C -0.074 4.074 5 N -0.261 5.261 6 C -0.071 4.071 7 C -0.155 4.155 8 C -0.151 4.151 9 C -0.145 4.145 10 C -0.031 4.031 11 H 0.100 0.900 12 C 0.304 3.696 13 O -0.439 6.439 14 N -0.335 5.335 15 C 0.010 3.990 16 H 0.119 0.881 17 C -0.186 4.186 18 H 0.153 0.847 19 C 0.026 3.974 20 N -0.348 5.348 21 C -0.367 4.367 22 H 0.100 0.900 23 C -0.259 4.259 24 N -0.598 5.598 25 Si 0.809 3.191 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.191 1.191 29 C 0.062 3.938 30 C -0.195 4.195 31 H 0.145 0.855 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.107 0.893 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.102 0.898 49 H 0.253 0.747 50 H 0.081 0.919 51 H 0.032 0.968 52 H 0.059 0.941 53 H 0.021 0.979 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.192 7.939 25.307 28.788 hybrid contribution 1.336 -0.919 -0.679 1.759 sum -9.856 7.019 24.628 27.440 Atomic orbital electron populations 1.21736 0.94946 1.01989 1.01929 1.21481 0.96692 0.96272 1.01682 1.21440 0.93684 0.96816 1.01954 1.22168 0.96789 0.88268 1.00139 1.61634 1.17502 1.18691 1.28238 1.22254 1.02082 0.95377 0.87377 1.21628 0.96527 0.95061 1.02300 1.21560 0.97100 1.01308 0.95091 1.21570 1.01636 0.91580 0.99688 1.21594 0.91511 0.98078 0.91914 0.90022 1.21087 0.81748 0.77414 0.89386 1.90713 1.39414 1.59427 1.54386 1.45264 1.14874 1.55932 1.17455 1.21344 0.95650 0.95246 0.86711 0.88086 1.24272 1.04769 0.89650 0.99947 0.84716 1.21182 0.90966 0.96963 0.88322 1.46401 1.43134 1.02431 1.42790 1.19425 1.21656 0.90972 1.04647 0.89974 1.25724 1.03372 0.97925 0.98834 1.70089 1.45257 1.13431 1.31001 0.85030 0.78052 0.77682 0.78332 1.21505 1.21821 1.19100 1.21457 0.99179 0.83714 0.89472 1.24265 0.95546 1.02762 0.96973 0.85515 0.93442 0.92192 0.91770 0.93578 0.91139 0.90809 0.93404 0.93019 0.93659 0.89724 0.93626 0.92318 0.89260 0.90262 0.90450 0.92612 0.89840 0.74666 0.91860 0.96786 0.94123 0.97939 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 71.98 0.71 -1.56 16 2 C -0.12 -2.18 5.93 30.60 0.18 -2.00 16 3 C -0.10 -1.97 5.31 30.60 0.16 -1.80 16 4 C 0.05 1.14 4.60 86.30 0.40 1.53 16 5 N -0.53 -10.75 4.19 -875.49 -3.67 -14.42 16 6 C 0.06 0.76 5.29 86.33 0.46 1.22 16 7 C -0.12 -1.36 6.09 30.65 0.19 -1.18 16 8 C -0.11 -1.26 6.00 30.67 0.18 -1.07 16 9 C -0.11 -1.77 5.36 30.65 0.16 -1.60 16 10 C 0.08 1.55 2.23 44.19 0.10 1.65 16 11 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 12 C 0.52 14.08 5.65 87.66 0.50 14.57 16 13 O -0.56 -20.91 14.98 -3.05 -0.05 -20.96 16 14 N -0.68 -17.03 5.56 -442.54 -2.46 -19.50 16 15 C 0.12 3.91 5.97 44.99 0.27 4.18 16 16 H 0.10 4.07 7.40 -2.39 -0.02 4.05 16 17 C -0.17 -5.63 7.06 -9.89 -0.07 -5.70 16 18 H 0.14 3.78 8.14 -2.39 -0.02 3.76 16 19 C 0.15 6.46 7.05 86.53 0.61 7.07 16 20 N -0.62 -32.69 3.45 -678.16 -2.34 -35.03 16 21 C -0.24 -13.50 10.37 84.03 0.87 -12.63 16 22 H 0.08 4.43 7.85 -2.91 -0.02 4.41 16 23 C -0.07 -3.73 5.42 84.86 0.46 -3.27 16 24 N -0.95 -57.63 10.79 21.65 0.23 -57.39 16 25 Si 0.98 45.74 29.56 68.60 2.03 47.77 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 27 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 29 C 0.19 9.29 5.94 85.79 0.51 9.80 16 30 C -0.17 -6.42 6.96 -9.89 -0.07 -6.49 16 31 H 0.13 4.04 8.14 -2.39 -0.02 4.02 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.17 6.80 -2.39 -0.02 1.16 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.05 1.42 5.67 -2.39 -0.01 1.41 16 40 H 0.05 0.79 8.01 -2.39 -0.02 0.78 16 41 H 0.08 1.07 6.67 -2.39 -0.02 1.05 16 42 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 47 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.42 7.33 8.83 -92.71 -0.82 6.51 16 50 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 51 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 53 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 54 H 0.06 3.53 6.52 -2.39 -0.02 3.52 16 Total: -1.00 -72.46 415.75 -0.59 -73.05 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.04 Total: 23.77 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 5.62 Total: 2.71 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -8.24 Total: -126.34 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.05 Total: -20.96 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -72.46 -0.59 -73.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962276040.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.721 kcal (2) G-P(sol) polarization free energy of solvation -72.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds