Wall clock time and date at job start Tue Mar 31 2020 18:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47113 * 2 1 4 4 C 1.53003 * 109.47113 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47198 * 180.02562 * 4 3 2 6 6 C 1.46845 * 110.99715 * 308.30173 * 5 4 3 7 7 C 1.53032 * 109.52416 * 174.16243 * 6 5 4 8 8 C 1.53124 * 109.28019 * 59.17808 * 7 6 5 9 9 C 1.53123 * 109.15813 * 302.34875 * 8 7 6 10 10 C 1.46848 * 110.99966 * 184.09375 * 5 4 3 11 11 H 1.08997 * 109.46314 * 65.81577 * 10 5 4 12 12 C 1.50704 * 109.45727 * 305.84151 * 10 5 4 13 13 O 1.21278 * 120.00246 * 331.22690 * 12 10 5 14 14 N 1.34779 * 119.99463 * 151.23156 * 12 10 5 15 15 C 1.46500 * 119.99593 * 179.97438 * 14 12 10 16 16 H 1.09002 * 115.51974 * 9.41394 * 15 14 12 17 17 C 1.53005 * 117.44016 * 224.00148 * 15 14 12 18 18 H 1.08997 * 119.54242 * 4.11220 * 17 15 14 19 19 C 1.54439 * 118.09142 * 160.74401 * 17 15 14 20 20 N 1.48146 * 104.56056 * 87.29235 * 19 17 15 21 21 C 1.36938 * 127.84117 * 140.40259 * 20 19 17 22 22 H 1.07995 * 119.99826 * 195.34358 * 21 20 19 23 23 C 1.38805 * 119.99699 * 15.33842 * 21 20 19 24 24 N 1.31621 * 120.00439 * 9.94855 * 23 21 20 25 25 Si 1.86805 * 120.00039 * 189.94397 * 23 21 20 26 26 H 1.48502 * 109.46967 * 94.72112 * 25 23 21 27 27 H 1.48499 * 109.47202 * 214.72347 * 25 23 21 28 28 H 1.48501 * 109.46890 * 334.72272 * 25 23 21 29 29 C 1.48151 * 104.32109 * 320.40050 * 20 19 17 30 30 C 1.52994 * 117.44315 * 154.83340 * 15 14 12 31 31 H 1.09002 * 119.54000 * 354.28230 * 30 15 14 32 32 H 1.08999 * 109.47183 * 300.00003 * 1 2 3 33 33 H 1.08994 * 109.46951 * 60.00124 * 1 2 3 34 34 H 1.08999 * 109.47219 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.47183 * 239.99997 * 2 1 3 36 36 H 1.09001 * 109.46720 * 120.00118 * 2 1 3 37 37 H 1.08999 * 109.47099 * 59.99945 * 3 2 1 38 38 H 1.08994 * 109.47110 * 299.99778 * 3 2 1 39 39 H 1.08999 * 109.47183 * 59.99997 * 4 3 2 40 40 H 1.09001 * 109.46720 * 300.00118 * 4 3 2 41 41 H 1.09003 * 109.46007 * 294.17839 * 6 5 4 42 42 H 1.08998 * 109.46511 * 54.14111 * 6 5 4 43 43 H 1.09003 * 109.50840 * 179.11934 * 7 6 5 44 44 H 1.08994 * 109.50296 * 299.23942 * 7 6 5 45 45 H 1.08996 * 109.52291 * 62.24845 * 8 7 6 46 46 H 1.08994 * 109.52378 * 182.37782 * 8 7 6 47 47 H 1.09004 * 109.50035 * 297.70886 * 9 8 7 48 48 H 1.08996 * 109.50080 * 177.59522 * 9 8 7 49 49 H 0.96995 * 120.00030 * 359.97438 * 14 12 10 50 50 H 1.09002 * 110.44829 * 328.51937 * 19 17 15 51 51 H 1.08998 * 110.42516 * 206.05186 * 19 17 15 52 52 H 0.96996 * 119.99893 * 179.97438 * 24 23 21 53 53 H 1.09000 * 110.40645 * 280.79703 * 29 20 19 54 54 H 1.09001 * 110.40424 * 158.37166 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8275 0.0013 6 6 3.4345 3.6071 -1.0746 7 6 3.8549 5.0736 -0.9543 8 6 5.3802 5.1716 -1.0477 9 6 6.0073 4.3122 0.0536 10 6 5.5244 2.8678 -0.0960 11 1 5.8348 2.4796 -1.0660 12 6 6.1237 2.0223 0.9982 13 8 5.5295 1.8753 2.0452 14 7 7.3200 1.4298 0.8132 15 6 7.9028 0.6084 1.8771 16 1 7.2442 0.3937 2.7188 17 6 9.3916 0.7949 2.1765 18 1 9.9533 1.5660 1.6493 19 6 9.9256 0.3079 3.5413 20 7 10.2672 -1.1167 3.3208 21 6 11.3473 -1.8061 3.8038 22 1 11.6137 -2.7612 3.3758 23 6 12.0997 -1.2772 4.8435 24 7 11.6691 -0.2178 5.4950 25 14 13.7236 -2.0692 5.3181 26 1 14.8358 -1.3731 4.6227 27 1 13.9151 -1.9639 6.7870 28 1 13.7108 -3.5004 4.9220 29 6 9.1751 -1.6263 2.4591 30 6 8.8964 -0.4792 1.4641 31 1 9.0696 -0.6751 0.4059 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6767 1.9562 -0.8899 39 1 3.9337 0.9285 -0.8891 40 1 3.9329 0.9287 0.8909 41 1 3.7547 3.2155 -2.0402 42 1 2.3500 3.5324 -0.9943 43 1 3.4032 5.6492 -1.7622 44 1 3.5230 5.4698 0.0053 45 1 5.7093 4.8115 -2.0224 46 1 5.6870 6.2096 -0.9202 47 1 5.7092 4.6965 1.0291 48 1 7.0933 4.3439 -0.0342 49 1 7.7950 1.5472 -0.0242 50 1 9.1548 0.3998 4.3066 51 1 10.8138 0.8721 3.8256 52 1 12.1947 0.1515 6.2217 53 1 8.2871 -1.8364 3.0553 54 1 9.4971 -2.5214 1.9269 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962276059.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:58 Heat of formation + Delta-G solvation = -5.892520 kcal Electronic energy + Delta-G solvation = -29698.622549 eV Core-core repulsion = 25863.579486 eV Total energy + Delta-G solvation = -3835.043064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.60065 -40.40235 -38.94425 -36.57363 -36.07793 -34.38447 -33.87757 -32.57329 -31.62683 -29.48168 -28.95496 -27.71406 -25.93530 -25.12888 -23.58631 -23.04293 -21.97576 -21.71086 -21.42852 -20.91937 -20.57180 -18.89145 -18.29443 -17.77655 -16.86505 -16.63989 -16.54582 -16.19686 -15.73401 -15.52616 -15.39272 -15.09454 -14.91066 -14.66916 -14.52295 -14.37643 -14.18731 -13.80961 -13.76517 -13.53964 -13.34588 -13.20071 -13.12217 -12.90797 -12.72940 -12.37263 -12.29930 -12.15929 -12.06888 -12.03929 -11.89687 -11.82202 -11.78646 -11.65597 -11.62579 -11.47001 -11.08803 -10.88195 -10.78109 -10.61571 -9.72566 -9.25628 -8.95210 -7.93295 -5.30518 1.45992 1.47747 1.48790 1.57578 1.85235 2.47235 2.80001 2.86440 3.26588 3.50454 3.62480 3.79430 3.85021 3.90264 3.91694 3.94615 4.04668 4.09845 4.11820 4.22298 4.27217 4.29699 4.35923 4.38800 4.49209 4.57106 4.62888 4.67295 4.79644 4.80237 4.80841 4.88160 4.92630 4.96446 4.97575 4.98949 5.06907 5.12479 5.20173 5.24026 5.25524 5.29612 5.37476 5.39884 5.43081 5.44550 5.48570 5.52640 5.61759 5.97322 6.14165 6.15231 6.54020 6.97816 7.22974 7.65276 8.43631 9.20857 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.002320 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.494787 B =12067.794143 C =13317.520992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.109 4.109 4 C 0.051 3.949 5 N -0.535 5.535 6 C 0.051 3.949 7 C -0.118 4.118 8 C -0.113 4.113 9 C -0.107 4.107 10 C 0.082 3.918 11 H 0.083 0.917 12 C 0.516 3.484 13 O -0.564 6.564 14 N -0.683 5.683 15 C 0.117 3.883 16 H 0.100 0.900 17 C -0.183 4.183 18 H 0.123 0.877 19 C 0.190 3.810 20 N -0.617 5.617 21 C -0.240 4.240 22 H 0.085 0.915 23 C -0.065 4.065 24 N -0.950 5.950 25 Si 0.983 3.017 26 H -0.284 1.284 27 H -0.296 1.296 28 H -0.264 1.264 29 C 0.147 3.853 30 C -0.158 4.158 31 H 0.142 0.858 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.054 0.946 48 H 0.083 0.917 49 H 0.417 0.583 50 H -0.008 1.008 51 H 0.057 0.943 52 H 0.250 0.750 53 H 0.017 0.983 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.567 9.229 -21.651 29.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.146 4.146 4 C -0.077 4.077 5 N -0.261 5.261 6 C -0.076 4.076 7 C -0.156 4.156 8 C -0.151 4.151 9 C -0.145 4.145 10 C -0.030 4.030 11 H 0.101 0.899 12 C 0.303 3.697 13 O -0.441 6.441 14 N -0.334 5.334 15 C 0.010 3.990 16 H 0.118 0.882 17 C -0.204 4.204 18 H 0.141 0.859 19 C 0.064 3.936 20 N -0.341 5.341 21 C -0.369 4.369 22 H 0.103 0.897 23 C -0.259 4.259 24 N -0.598 5.598 25 Si 0.811 3.189 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.189 1.189 29 C 0.022 3.978 30 C -0.179 4.179 31 H 0.160 0.840 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.073 0.927 48 H 0.101 0.899 49 H 0.254 0.746 50 H 0.010 0.990 51 H 0.075 0.925 52 H 0.059 0.941 53 H 0.035 0.965 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.954 9.310 -20.292 29.286 hybrid contribution 1.460 -0.775 0.162 1.661 sum -17.494 8.535 -20.130 28.002 Atomic orbital electron populations 1.21733 0.94673 1.02032 1.02109 1.21487 0.96838 0.96226 1.01706 1.21623 0.93088 0.97300 1.02607 1.22207 0.96762 0.88592 1.00097 1.61677 1.03526 1.12912 1.47975 1.22323 1.00148 0.93788 0.91300 1.21638 0.96008 0.95225 1.02708 1.21564 0.95337 1.00148 0.98009 1.21572 1.00893 0.91417 1.00622 1.21592 0.89391 0.96640 0.95381 0.89911 1.21125 0.80398 0.79058 0.89129 1.90701 1.61757 1.61931 1.29734 1.45234 1.20531 1.49593 1.18054 1.21322 0.89639 0.95416 0.92635 0.88173 1.24380 0.96063 1.00593 0.99357 0.85899 1.20757 0.96626 0.85546 0.90687 1.45493 1.23984 1.06669 1.57911 1.19426 1.02444 1.03204 1.11827 0.89715 1.25805 1.03500 0.99616 0.96942 1.70121 1.39182 1.26388 1.24058 0.84995 0.79000 0.78387 0.76528 1.21085 1.22260 1.18893 1.21283 0.90181 0.95151 0.91229 1.24171 1.02550 0.90841 1.00303 0.84049 0.93019 0.91763 0.92321 0.91536 0.93411 0.92422 0.90075 0.94547 0.92757 0.93661 0.89159 0.89200 0.92365 0.90412 0.90280 0.92694 0.89861 0.74610 0.99042 0.92481 0.94104 0.96530 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.12 -2.02 5.93 30.59 0.18 -1.84 16 3 C -0.11 -1.87 4.71 30.59 0.14 -1.73 16 4 C 0.05 1.09 4.58 86.30 0.40 1.48 16 5 N -0.53 -10.96 4.36 -875.51 -3.82 -14.78 16 6 C 0.05 0.70 5.03 86.32 0.43 1.14 16 7 C -0.12 -1.40 6.09 30.65 0.19 -1.22 16 8 C -0.11 -1.29 6.00 30.68 0.18 -1.11 16 9 C -0.11 -1.83 5.36 30.65 0.16 -1.66 16 10 C 0.08 1.60 2.23 44.19 0.10 1.70 16 11 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 12 C 0.52 14.35 6.00 87.66 0.53 14.88 16 13 O -0.56 -21.49 14.70 -3.02 -0.04 -21.53 16 14 N -0.68 -17.18 5.56 -442.53 -2.46 -19.64 16 15 C 0.12 3.93 5.98 44.99 0.27 4.20 16 16 H 0.10 4.08 7.40 -2.39 -0.02 4.06 16 17 C -0.18 -6.90 7.05 -9.92 -0.07 -6.97 16 18 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 19 C 0.19 9.70 5.70 86.55 0.49 10.19 16 20 N -0.62 -32.46 3.38 -688.05 -2.32 -34.78 16 21 C -0.24 -13.60 10.35 84.03 0.87 -12.73 16 22 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 23 C -0.07 -3.74 5.39 84.86 0.46 -3.29 16 24 N -0.95 -58.39 10.89 21.65 0.24 -58.15 16 25 Si 0.98 45.80 29.57 68.60 2.03 47.83 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 28 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 29 C 0.15 6.18 7.04 86.53 0.61 6.79 16 30 C -0.16 -5.27 7.05 -9.94 -0.07 -5.34 16 31 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.08 6.19 -2.39 -0.01 1.06 16 39 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.05 1.57 6.10 -2.39 -0.01 1.56 16 41 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.09 1.13 5.84 -2.39 -0.01 1.12 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.42 7.30 8.83 -92.71 -0.82 6.48 16 50 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 51 H 0.06 3.26 6.53 -2.39 -0.02 3.25 16 52 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 53 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 54 H 0.07 2.60 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -73.79 414.06 -0.76 -74.54 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.04 Total: 23.28 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 5.59 Total: 3.23 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -8.37 Total: -127.36 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.04 Total: -21.53 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -73.79 -0.76 -74.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962276059.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.649 kcal (2) G-P(sol) polarization free energy of solvation -73.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds