Wall clock time and date at job start Tue Mar 31 2020 19:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46800 * 2 1 4 4 N 1.46888 * 109.47397 * 120.00254 * 2 1 3 5 5 C 1.49004 * 110.97498 * 183.28578 * 4 2 1 6 6 C 1.54934 * 103.01042 * 200.29976 * 5 4 2 7 7 C 1.54601 * 103.08139 * 37.39391 * 6 5 4 8 8 C 1.47902 * 111.00054 * 65.84087 * 4 2 1 9 9 H 1.09004 * 109.91448 * 26.49736 * 8 4 2 10 10 C 1.50697 * 110.08632 * 265.29145 * 8 4 2 11 11 O 1.21284 * 119.99623 * 0.85894 * 10 8 4 12 12 N 1.34779 * 120.00304 * 180.85605 * 10 8 4 13 13 C 1.46495 * 120.00043 * 179.97438 * 12 10 8 14 14 C 1.53946 * 113.58303 * 252.72027 * 13 12 10 15 15 C 1.52902 * 86.78482 * 220.66474 * 14 13 12 16 16 C 1.52909 * 121.13748 * 150.61509 * 15 14 13 17 17 C 1.53952 * 86.78314 * 100.82390 * 16 15 14 18 18 N 1.46497 * 113.65183 * 139.34725 * 17 16 15 19 19 C 1.36939 * 120.00007 * 107.24024 * 18 17 16 20 20 H 1.07997 * 120.00079 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00070 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00265 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00041 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47331 * 89.99476 * 23 21 19 25 25 H 1.48499 * 109.47202 * 209.99978 * 23 21 19 26 26 H 1.48507 * 109.47012 * 329.99334 * 23 21 19 27 27 C 1.52903 * 121.13927 * 259.17999 * 15 14 13 28 28 C 1.52909 * 88.04354 * 24.89945 * 15 14 13 29 29 H 1.08993 * 109.46971 * 299.99623 * 1 2 3 30 30 H 1.08998 * 109.46712 * 59.99565 * 1 2 3 31 31 H 1.08994 * 109.46869 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46790 * 240.00468 * 2 1 3 33 33 H 1.09001 * 109.47854 * 305.77025 * 3 2 1 34 34 H 1.09003 * 109.47199 * 65.77624 * 3 2 1 35 35 H 1.09001 * 109.46902 * 185.77195 * 3 2 1 36 36 H 1.09006 * 110.86637 * 81.89397 * 5 4 2 37 37 H 1.09002 * 110.67798 * 318.61859 * 5 4 2 38 38 H 1.09007 * 110.72281 * 278.95390 * 6 5 4 39 39 H 1.08990 * 110.73020 * 155.84507 * 6 5 4 40 40 H 1.08996 * 110.30537 * 96.87229 * 7 6 5 41 41 H 1.08993 * 110.30958 * 218.94282 * 7 6 5 42 42 H 0.97001 * 119.99344 * 0.02562 * 12 10 8 43 43 H 1.09004 * 112.82545 * 23.91750 * 13 12 10 44 44 H 1.09003 * 113.66326 * 335.13825 * 14 13 12 45 45 H 1.09005 * 113.66407 * 106.19319 * 14 13 12 46 46 H 1.09001 * 113.66266 * 215.29560 * 16 15 14 47 47 H 1.09003 * 113.66107 * 346.35181 * 16 15 14 48 48 H 1.08995 * 113.57683 * 270.13426 * 17 16 15 49 49 H 0.97002 * 119.99923 * 287.24757 * 18 17 16 50 50 H 0.96999 * 120.00308 * 180.02562 * 22 21 19 51 51 H 1.09002 * 113.66351 * 13.64587 * 27 15 14 52 52 H 1.09000 * 113.66571 * 144.61604 * 27 15 14 53 53 H 1.08998 * 113.66684 * 220.63254 * 28 15 14 54 54 H 1.08996 * 113.66487 * 89.56774 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 3.5071 -0.6433 1.2736 6 6 3.8473 -1.8123 2.2318 7 6 2.8136 -2.8946 1.8442 8 6 1.6637 -2.1276 1.1652 9 1 1.5553 -2.4588 0.1324 10 6 0.3779 -2.3598 1.9162 11 8 -0.2060 -1.4249 2.4222 12 7 -0.1231 -3.6062 2.0254 13 6 -1.3727 -3.8319 2.7559 14 6 -1.1736 -4.5179 4.1197 15 6 -2.4209 -5.3393 3.7918 16 6 -2.6028 -6.7544 4.3418 17 6 -3.5378 -6.1316 5.3945 18 7 -4.7323 -6.9344 5.6680 19 6 -4.8414 -7.6192 6.8488 20 1 -4.0471 -7.5671 7.5787 21 6 -5.9735 -8.3795 7.1082 22 7 -6.0786 -9.0373 8.2434 23 14 -7.3478 -8.4690 5.8462 24 1 -7.0993 -9.6056 4.9235 25 1 -8.6451 -8.6695 6.5405 26 1 -7.3916 -7.2028 5.0714 27 6 -3.7810 -4.9865 4.3946 28 6 -2.1261 -5.0986 2.3108 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.5948 1.9854 -0.8338 34 1 1.7635 1.9256 0.9372 35 1 3.1251 1.4443 -0.1034 36 1 3.8439 0.3060 1.6902 37 1 3.9474 -0.8110 0.2907 38 1 3.7175 -1.5096 3.2709 39 1 4.8626 -2.1694 2.0596 40 1 3.2555 -3.6077 1.1484 41 1 2.4530 -3.4095 2.7346 42 1 0.3442 -4.3538 1.6210 43 1 -2.0025 -2.9434 2.8012 44 1 -0.2620 -5.1123 4.1815 45 1 -1.3023 -3.8475 4.9695 46 1 -3.1089 -7.4301 3.6523 47 1 -1.6922 -7.1805 4.7630 48 1 -3.0235 -5.8159 6.3022 49 1 -5.4459 -6.9810 5.0126 50 1 -6.8695 -9.5688 8.4245 51 1 -3.8117 -4.0003 4.8580 52 1 -4.6181 -5.1638 3.7194 53 1 -3.0155 -4.8921 1.7156 54 1 -1.4822 -5.8562 1.8642 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963787146.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:18 Heat of formation + Delta-G solvation = 2.521849 kcal Electronic energy + Delta-G solvation = -29546.642453 eV Core-core repulsion = 25711.964263 eV Total energy + Delta-G solvation = -3834.678189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.78486 -40.97835 -39.03685 -37.22759 -35.59309 -35.14201 -33.63660 -32.07475 -30.52522 -30.15356 -27.82161 -26.75981 -26.66787 -25.96484 -24.61529 -23.12654 -22.19951 -21.61225 -21.33545 -20.73216 -19.80194 -18.73190 -18.16278 -17.50655 -17.18485 -16.92257 -16.30322 -16.08783 -15.83779 -15.57936 -15.35830 -15.16915 -14.77060 -14.60185 -14.47728 -14.11581 -13.72480 -13.65699 -13.61648 -13.56298 -13.43587 -13.22118 -12.98846 -12.94675 -12.88433 -12.47442 -12.36256 -12.24232 -12.20070 -12.10366 -12.01300 -11.89836 -11.86312 -11.75932 -11.66204 -11.41289 -11.05945 -10.86519 -10.83433 -10.54384 -9.89532 -9.33087 -9.26337 -8.02522 -5.35272 1.37353 1.41099 1.48451 1.74808 2.13875 2.48372 3.03411 3.27308 3.45760 3.51104 3.58806 3.61953 3.69642 3.80994 3.90413 3.94294 4.04097 4.07278 4.09602 4.19147 4.28726 4.29909 4.40031 4.50246 4.58817 4.59546 4.71650 4.78528 4.80562 4.82817 4.84793 4.89886 4.91874 4.94131 4.96684 4.97037 5.02511 5.06284 5.08783 5.11638 5.15641 5.23487 5.29321 5.32911 5.41062 5.48520 5.62788 5.68439 5.78466 5.89155 6.13733 6.22989 6.71755 7.07974 7.42773 7.85625 8.05219 9.19139 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.028290 B = 0.001964 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.522759 B =14250.590225 C =14743.947247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.071 3.929 3 C -0.140 4.140 4 N -0.517 5.517 5 C 0.038 3.962 6 C -0.123 4.123 7 C -0.120 4.120 8 C 0.051 3.949 9 H 0.092 0.908 10 C 0.516 3.484 11 O -0.560 6.560 12 N -0.711 5.711 13 C 0.133 3.867 14 C -0.122 4.122 15 C -0.091 4.091 16 C -0.137 4.137 17 C 0.148 3.852 18 N -0.743 5.743 19 C -0.233 4.233 20 H 0.054 0.946 21 C -0.068 4.068 22 N -0.985 5.985 23 Si 0.958 3.042 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.252 1.252 27 C -0.124 4.124 28 C -0.114 4.114 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.413 0.587 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.056 0.944 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.366 0.634 50 H 0.257 0.743 51 H 0.065 0.935 52 H 0.085 0.915 53 H 0.077 0.923 54 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.327 16.787 -24.814 37.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.037 4.037 3 C -0.197 4.197 4 N -0.242 5.242 5 C -0.089 4.089 6 C -0.161 4.161 7 C -0.159 4.159 8 C -0.062 4.062 9 H 0.110 0.890 10 C 0.302 3.698 11 O -0.437 6.437 12 N -0.363 5.363 13 C 0.028 3.972 14 C -0.161 4.161 15 C -0.092 4.092 16 C -0.178 4.178 17 C 0.040 3.960 18 N -0.384 5.384 19 C -0.364 4.364 20 H 0.073 0.927 21 C -0.259 4.259 22 N -0.636 5.636 23 Si 0.785 3.215 24 H -0.202 1.202 25 H -0.224 1.224 26 H -0.177 1.177 27 C -0.162 4.162 28 C -0.152 4.152 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.089 0.911 42 H 0.250 0.750 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.200 0.800 50 H 0.066 0.934 51 H 0.084 0.916 52 H 0.103 0.897 53 H 0.096 0.904 54 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 22.712 17.685 -23.801 37.351 hybrid contribution -0.886 -1.040 -0.574 1.482 sum 21.826 16.646 -24.374 36.709 Atomic orbital electron populations 1.21765 0.95002 1.00823 1.01354 1.21840 0.95336 0.96083 0.90433 1.21812 1.01405 0.94349 1.02145 1.64491 1.11232 1.09451 1.39075 1.23360 0.86216 0.99982 0.99327 1.22494 0.99636 0.94519 0.99405 1.22456 0.93939 0.98112 1.01350 1.22346 0.93285 0.90950 0.99583 0.88995 1.20953 0.86424 0.82475 0.79901 1.90689 1.61397 1.43279 1.48329 1.45907 1.25149 1.09094 1.56170 1.22264 0.85732 0.97429 0.91791 1.23174 0.97383 0.97974 0.97555 1.21888 0.94697 0.95995 0.96630 1.23404 0.99848 0.95637 0.98875 1.21890 0.87556 0.91489 0.95110 1.42755 1.20215 1.56934 1.18508 1.19110 1.02265 1.20366 0.94673 0.92747 1.25554 1.01099 0.99950 0.99316 1.69892 1.30493 1.36931 1.26248 0.85365 0.78508 0.78857 0.78784 1.20211 1.22376 1.17687 1.23121 0.96504 0.98513 0.98089 1.23128 1.00601 0.96333 0.95096 0.93745 0.91467 0.94510 0.92879 0.91114 0.93253 0.91489 0.89753 0.91905 0.92180 0.88448 0.87661 0.91050 0.74990 0.89137 0.88315 0.92480 0.90426 0.92083 0.91762 0.80006 0.93391 0.91626 0.89670 0.90400 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 7.94 71.98 0.57 -1.88 16 2 C 0.07 1.05 2.40 44.92 0.11 1.16 16 3 C -0.14 -1.74 8.81 71.98 0.63 -1.10 16 4 N -0.52 -8.60 4.35 -836.11 -3.64 -12.23 16 5 C 0.04 0.42 5.33 86.56 0.46 0.88 16 6 C -0.12 -1.22 7.05 31.80 0.22 -1.00 16 7 C -0.12 -1.16 6.46 31.48 0.20 -0.96 16 8 C 0.05 0.72 2.40 44.31 0.11 0.82 16 9 H 0.09 0.98 7.64 -2.39 -0.02 0.97 16 10 C 0.52 10.65 5.61 87.66 0.49 11.15 16 11 O -0.56 -16.98 14.13 -3.04 -0.04 -17.03 16 12 N -0.71 -11.45 5.22 -439.52 -2.30 -13.75 16 13 C 0.13 2.70 4.24 45.63 0.19 2.90 16 14 C -0.12 -2.74 7.64 30.88 0.24 -2.50 16 15 C -0.09 -2.22 1.11 -52.32 -0.06 -2.28 16 16 C -0.14 -4.20 7.64 30.89 0.24 -3.96 16 17 C 0.15 5.65 4.48 45.63 0.20 5.85 16 18 N -0.74 -35.10 5.21 -319.93 -1.67 -36.77 16 19 C -0.23 -13.53 10.45 84.03 0.88 -12.66 16 20 H 0.05 3.47 8.06 -2.91 -0.02 3.45 16 21 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 22 N -0.99 -64.09 13.97 21.65 0.30 -63.78 16 23 Si 0.96 45.99 27.74 68.60 1.90 47.89 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 25 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 26 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 27 C -0.12 -3.71 7.59 30.88 0.23 -3.48 16 28 C -0.11 -2.06 7.59 30.89 0.23 -1.83 16 29 H 0.04 1.09 7.61 -2.39 -0.02 1.08 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.04 0.74 6.21 -2.39 -0.01 0.73 16 32 H 0.05 0.63 7.93 -2.39 -0.02 0.61 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.64 7.19 -2.39 -0.02 0.62 16 36 H 0.08 0.96 7.79 -2.38 -0.02 0.94 16 37 H 0.06 0.49 8.02 -2.39 -0.02 0.47 16 38 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.07 0.83 7.63 -2.39 -0.02 0.81 16 42 H 0.41 3.96 8.69 -92.71 -0.81 3.16 16 43 H 0.09 2.31 7.47 -2.38 -0.02 2.30 16 44 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 46 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.06 2.64 8.10 -2.39 -0.02 2.62 16 49 H 0.37 16.49 5.79 -92.71 -0.54 15.95 16 50 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 51 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 52 H 0.08 2.47 8.12 -2.39 -0.02 2.46 16 53 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 54 H 0.11 1.51 8.12 -2.39 -0.02 1.49 16 Total: -1.00 -75.91 413.97 -0.54 -76.45 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.53 Total: 31.71 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 5.43 Total: -12.49 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -7.30 Total: -126.53 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.04 Total: -17.03 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.90 Total: 47.89 kcal Total: -75.91 -0.54 -76.45 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963787146.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.972 kcal (2) G-P(sol) polarization free energy of solvation -75.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds