Wall clock time and date at job start Tue Mar 31 2020 18:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 110.64285 * 2 1 4 4 C 1.54324 * 110.72016 * 236.85468 * 2 1 3 5 5 N 1.47491 * 107.03462 * 263.78902 * 4 2 1 6 6 C 1.36940 * 125.58903 * 181.07455 * 5 4 2 7 7 H 1.07999 * 119.99906 * 359.96799 * 6 5 4 8 8 C 1.38814 * 119.99579 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99898 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99597 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47340 * 60.00116 * 10 8 6 12 12 H 1.48507 * 109.46919 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47107 * 299.99836 * 10 8 6 14 14 C 1.47424 * 108.75852 * 1.02679 * 5 4 2 15 15 C 1.54912 * 104.83317 * 335.89028 * 14 5 4 16 16 H 1.08998 * 110.99963 * 155.08337 * 15 14 5 17 17 N 1.46494 * 111.03855 * 278.92003 * 15 14 5 18 18 C 1.34779 * 120.00265 * 267.21987 * 17 15 14 19 19 O 1.21282 * 119.99842 * 354.99342 * 18 17 15 20 20 C 1.50695 * 120.00210 * 174.99990 * 18 17 15 21 21 H 1.09002 * 109.46960 * 315.06961 * 20 18 17 22 22 C 1.53005 * 109.47575 * 75.06787 * 20 18 17 23 23 C 1.52998 * 117.49489 * 5.73075 * 22 20 18 24 24 C 1.52992 * 59.99982 * 252.50850 * 23 22 20 25 25 N 1.46900 * 109.47455 * 195.07038 * 20 18 17 26 26 C 1.48535 * 110.99963 * 294.17690 * 25 20 18 27 27 C 1.54934 * 103.22688 * 159.71615 * 26 25 20 28 28 C 1.54592 * 102.92447 * 322.58415 * 27 26 25 29 29 C 1.47904 * 110.99782 * 51.56630 * 25 20 18 30 30 H 1.08999 * 109.47058 * 59.30346 * 1 2 3 31 31 H 1.08996 * 109.47408 * 179.30113 * 1 2 3 32 32 H 1.09004 * 109.47266 * 299.30377 * 1 2 3 33 33 H 1.09000 * 109.47413 * 60.69771 * 3 2 1 34 34 H 1.09000 * 109.47651 * 180.69995 * 3 2 1 35 35 H 1.09001 * 109.47047 * 300.70161 * 3 2 1 36 36 H 1.08993 * 109.88302 * 23.25148 * 4 2 1 37 37 H 1.09005 * 109.87679 * 144.41281 * 4 2 1 38 38 H 0.97002 * 119.99363 * 179.97438 * 9 8 6 39 39 H 1.09000 * 110.36394 * 217.05455 * 14 5 4 40 40 H 1.08994 * 110.46028 * 94.77742 * 14 5 4 41 41 H 0.97008 * 120.00104 * 87.21382 * 17 15 14 42 42 H 1.08999 * 115.55108 * 151.43733 * 22 20 18 43 43 H 1.09002 * 117.49990 * 359.97438 * 23 22 20 44 44 H 1.09003 * 117.49739 * 145.01948 * 23 22 20 45 45 H 1.09003 * 117.50143 * 252.50853 * 24 23 22 46 46 H 1.09004 * 117.51814 * 107.48052 * 24 23 22 47 47 H 1.08997 * 110.66263 * 278.15349 * 26 25 20 48 48 H 1.08996 * 110.66683 * 41.27934 * 26 25 20 49 49 H 1.09003 * 110.72113 * 204.22110 * 27 26 25 50 50 H 1.09000 * 110.72330 * 80.94530 * 27 26 25 51 51 H 1.09000 * 110.30834 * 263.04531 * 28 27 26 52 52 H 1.08998 * 110.39538 * 140.91977 * 28 27 26 53 53 H 1.09002 * 109.91561 * 333.51674 * 29 25 20 54 54 H 1.09001 * 109.91693 * 94.80079 * 29 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4317 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 2.3716 -2.1545 -0.7352 6 6 2.8943 -3.1660 -1.4960 7 1 3.1250 -2.9948 -2.5371 8 6 3.1276 -4.4114 -0.9290 9 7 2.8468 -4.6198 0.3399 10 14 3.8400 -5.7914 -1.9669 11 1 5.1675 -5.3817 -2.4913 12 1 3.9916 -7.0106 -1.1326 13 1 2.9267 -6.0793 -3.1018 14 6 2.0126 -2.2497 0.6915 15 6 2.0789 -0.7933 1.2152 16 1 1.4395 -0.6626 2.0882 17 7 3.4591 -0.4049 1.5158 18 6 3.9471 -0.5619 2.7623 19 8 3.2187 -0.9388 3.6557 20 6 5.3979 -0.2689 3.0460 21 1 6.0169 -0.7078 2.2635 22 6 5.6155 1.2452 3.0792 23 6 4.3788 2.1392 2.9682 24 6 5.3488 2.0257 1.7905 25 7 5.7690 -0.8455 4.3451 26 6 5.0445 -0.1718 5.4530 27 6 5.1307 -1.1993 6.6094 28 6 4.9817 -2.5542 5.8800 29 6 5.3852 -2.2719 4.4210 30 1 -0.3633 0.5246 -0.8837 31 1 -0.3634 -1.0275 -0.0125 32 1 -0.3634 0.5030 0.8962 33 1 1.7268 1.9491 0.8962 34 1 3.1591 1.4096 -0.0126 35 1 1.7064 1.9567 -0.8836 36 1 1.3263 -0.8222 -1.9991 37 1 2.9869 -0.3180 -1.5780 38 1 3.0094 -5.4902 0.7360 39 1 2.7293 -2.8766 1.2219 40 1 1.0044 -2.6480 0.8049 41 1 4.0219 -0.0349 0.8177 42 1 6.4301 1.5892 3.7165 43 1 3.4102 1.6486 2.8711 44 1 4.3795 3.0716 3.5328 45 1 5.9877 2.8834 1.5802 46 1 5.0188 1.4604 0.9189 47 1 5.5410 0.7589 5.7274 48 1 4.0059 0.0116 5.1780 49 1 4.3162 -1.0512 7.3184 50 1 6.0964 -1.1354 7.1110 51 1 3.9483 -2.8975 5.9270 52 1 5.6470 -3.2974 6.3195 53 1 4.5416 -2.4651 3.7583 54 1 6.2315 -2.8995 4.1416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974869985.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:10 Heat of formation + Delta-G solvation = 16.760325 kcal Electronic energy + Delta-G solvation = -32520.518351 eV Core-core repulsion = 28686.457588 eV Total energy + Delta-G solvation = -3834.060763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.13412 -40.27319 -38.36118 -37.87912 -35.63597 -34.38738 -32.93525 -32.60556 -29.97530 -29.75984 -28.31438 -27.57548 -27.13784 -25.14847 -23.47181 -23.06480 -22.45977 -21.83247 -21.44570 -20.92935 -19.88784 -18.71443 -18.01530 -17.96185 -17.09465 -16.78634 -16.41332 -16.26104 -15.65932 -15.46652 -15.30945 -15.27370 -15.09591 -14.67446 -14.39354 -13.86596 -13.78386 -13.70570 -13.52301 -13.29999 -13.05778 -13.01801 -12.83921 -12.71966 -12.64475 -12.59685 -12.33836 -12.21449 -12.20817 -12.14627 -11.95120 -11.81498 -11.76088 -11.54553 -11.40057 -11.37793 -11.28678 -11.20987 -10.84659 -10.77295 -9.88872 -9.26661 -8.86367 -7.76995 -5.21890 1.42968 1.45595 1.52120 1.62861 2.24982 2.47206 2.78707 2.98361 3.32525 3.55397 3.61620 3.66808 3.77735 3.80753 3.91994 3.95532 4.01141 4.05034 4.08158 4.17952 4.39013 4.46334 4.48497 4.50650 4.51692 4.71715 4.73741 4.76490 4.77408 4.81135 4.87911 4.90253 4.96184 4.99588 5.02348 5.07179 5.09286 5.11445 5.18003 5.19064 5.22491 5.26563 5.29087 5.32233 5.37148 5.46707 5.51570 5.69611 5.80769 5.82465 5.93753 6.28328 6.61099 7.07826 7.28804 7.77328 8.41115 9.22923 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.010073 B = 0.005067 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.953266 B = 5524.910225 C = 7127.706831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 C -0.122 4.122 4 C 0.138 3.862 5 N -0.617 5.617 6 C -0.233 4.233 7 H 0.083 0.917 8 C -0.067 4.067 9 N -0.947 5.947 10 Si 0.975 3.025 11 H -0.275 1.275 12 H -0.299 1.299 13 H -0.279 1.279 14 C 0.157 3.843 15 C 0.137 3.863 16 H 0.077 0.923 17 N -0.692 5.692 18 C 0.495 3.505 19 O -0.569 6.569 20 C 0.086 3.914 21 H 0.098 0.902 22 C -0.142 4.142 23 C -0.180 4.180 24 C -0.160 4.160 25 N -0.483 5.483 26 C 0.027 3.973 27 C -0.112 4.112 28 C -0.120 4.120 29 C 0.027 3.973 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.025 0.975 37 H 0.035 0.965 38 H 0.242 0.758 39 H 0.067 0.933 40 H -0.020 1.020 41 H 0.402 0.598 42 H 0.135 0.865 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.126 0.874 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.055 0.945 49 H 0.075 0.925 50 H 0.085 0.915 51 H 0.047 0.953 52 H 0.080 0.920 53 H 0.028 0.972 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 17.141 6.617 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.075 4.075 3 C -0.180 4.180 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.362 4.362 7 H 0.101 0.899 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.804 3.196 11 H -0.201 1.201 12 H -0.226 1.226 13 H -0.205 1.205 14 C 0.031 3.969 15 C 0.031 3.969 16 H 0.095 0.905 17 N -0.344 5.344 18 C 0.281 3.719 19 O -0.450 6.450 20 C -0.027 4.027 21 H 0.116 0.884 22 C -0.161 4.161 23 C -0.217 4.217 24 C -0.198 4.198 25 N -0.205 5.205 26 C -0.100 4.100 27 C -0.150 4.150 28 C -0.158 4.158 29 C -0.101 4.101 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.043 0.957 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.085 0.915 40 H -0.002 1.002 41 H 0.240 0.760 42 H 0.153 0.847 43 H 0.094 0.906 44 H 0.133 0.867 45 H 0.144 0.856 46 H 0.105 0.895 47 H 0.111 0.889 48 H 0.073 0.927 49 H 0.094 0.906 50 H 0.104 0.896 51 H 0.066 0.934 52 H 0.099 0.901 53 H 0.046 0.954 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.967 16.708 7.282 18.891 hybrid contribution -0.780 -1.839 -1.124 2.292 sum 4.187 14.869 6.158 16.630 Atomic orbital electron populations 1.21684 0.92697 1.01036 1.02930 1.21814 0.96677 0.96049 0.92975 1.21703 1.00760 0.92560 1.02929 1.21725 0.97090 0.84791 0.95103 1.44769 1.73933 1.08180 1.07383 1.19396 1.33245 0.90127 0.93462 0.89894 1.25587 1.02874 1.00051 0.97396 1.70102 1.55190 1.22036 1.12372 0.85196 0.78580 0.78418 0.77413 1.20065 1.22582 1.20489 1.21909 0.96376 0.93289 0.85320 1.22108 0.82994 0.95109 0.96726 0.90517 1.46026 1.13852 1.63404 1.11071 1.21947 0.91525 0.76030 0.82356 1.90621 1.60925 1.48111 1.45312 1.21649 0.89730 0.96849 0.94467 0.88380 1.22059 1.01928 0.88332 1.03786 1.23162 0.93667 1.01861 1.02986 1.23146 1.02670 1.02713 0.91251 1.65224 1.51676 1.02286 1.01357 1.23421 0.98293 0.97922 0.90363 1.22416 1.02631 0.93076 0.96900 1.22233 1.00673 0.99000 0.93903 1.22914 0.98747 0.90099 0.98386 0.90296 0.94976 0.91351 0.91652 0.92317 0.90550 0.95653 0.94684 0.94850 0.91455 1.00173 0.76037 0.84726 0.90552 0.86705 0.85615 0.89528 0.88876 0.92656 0.90623 0.89615 0.93403 0.90132 0.95409 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 8.41 71.98 0.61 -3.03 16 2 C -0.07 -2.31 0.80 -50.99 -0.04 -2.35 16 3 C -0.12 -2.74 8.11 71.98 0.58 -2.16 16 4 C 0.14 5.29 6.45 86.64 0.56 5.85 16 5 N -0.62 -30.97 3.41 -690.80 -2.35 -33.32 16 6 C -0.23 -12.93 10.28 84.03 0.86 -12.06 16 7 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 8 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 9 N -0.95 -58.21 10.09 21.65 0.22 -57.99 16 10 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.16 8.02 5.27 86.86 0.46 8.47 16 15 C 0.14 5.27 2.70 46.39 0.13 5.39 16 16 H 0.08 3.11 7.38 -2.39 -0.02 3.09 16 17 N -0.69 -23.48 3.74 -435.97 -1.63 -25.11 16 18 C 0.49 17.22 3.74 87.66 0.33 17.55 16 19 O -0.57 -23.45 11.61 -3.04 -0.04 -23.49 16 20 C 0.09 2.47 2.78 44.17 0.12 2.60 16 21 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 22 C -0.14 -2.95 4.72 -10.79 -0.05 -3.00 16 23 C -0.18 -3.49 9.61 30.59 0.29 -3.20 16 24 C -0.16 -2.72 9.87 30.59 0.30 -2.42 16 25 N -0.48 -14.13 5.37 -862.24 -4.63 -18.76 16 26 C 0.03 0.71 5.27 86.65 0.46 1.17 16 27 C -0.11 -2.70 7.06 31.80 0.22 -2.47 16 28 C -0.12 -3.49 6.93 31.47 0.22 -3.27 16 29 C 0.03 0.91 6.01 86.45 0.52 1.43 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.03 1.11 7.51 -2.39 -0.02 1.09 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.26 5.42 -2.39 -0.01 1.25 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.03 0.98 7.84 -2.39 -0.02 0.96 16 37 H 0.04 1.27 7.80 -2.38 -0.02 1.25 16 38 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.07 4.05 5.87 -2.39 -0.01 4.03 16 40 H -0.02 -1.11 7.76 -2.39 -0.02 -1.13 16 41 H 0.40 12.33 5.10 -92.70 -0.47 11.86 16 42 H 0.13 2.43 8.05 -2.39 -0.02 2.41 16 43 H 0.08 1.91 6.15 -2.39 -0.01 1.89 16 44 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.09 1.62 4.96 -2.38 -0.01 1.61 16 47 H 0.09 2.01 7.83 -2.39 -0.02 1.99 16 48 H 0.06 1.77 5.48 -2.39 -0.01 1.75 16 49 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 53 H 0.03 1.19 5.31 -2.39 -0.01 1.18 16 54 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -69.58 394.87 0.04 -69.54 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.41 Total: 35.61 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 6.03 Total: 5.14 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -8.39 Total: -135.19 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.04 Total: -23.49 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -69.58 0.04 -69.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974869985.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.300 kcal (2) G-P(sol) polarization free energy of solvation -69.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds