Wall clock time and date at job start Tue Mar 31 2020 19:14:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53005 * 109.47176 * 2 1
4 4 N 1.46900 * 109.46855 * 119.99629 * 2 1 3
5 5 C 1.46846 * 111.00551 * 295.29935 * 4 2 1
6 6 C 1.53028 * 109.52443 * 174.16186 * 5 4 2
7 7 C 1.53117 * 109.28205 * 59.17974 * 6 5 4
8 8 C 1.53115 * 109.15774 * 302.34678 * 7 6 5
9 9 C 1.46852 * 110.99749 * 171.08840 * 4 2 1
10 10 H 1.08996 * 109.45173 * 65.83162 * 9 4 2
11 11 C 1.50695 * 109.46107 * 305.85636 * 9 4 2
12 12 O 1.21289 * 120.00376 * 331.26941 * 11 9 4
13 13 N 1.34780 * 120.00043 * 150.99448 * 11 9 4
14 14 C 1.46500 * 120.00199 * 179.97438 * 13 11 9
15 15 C 1.52997 * 109.47022 * 179.97438 * 14 13 11
16 16 H 1.09004 * 115.51789 * 29.58569 * 15 14 13
17 17 C 1.53005 * 117.44196 * 244.24165 * 15 14 13
18 18 H 1.08999 * 119.54059 * 4.11858 * 17 15 14
19 19 C 1.54394 * 118.11923 * 160.81230 * 17 15 14
20 20 N 1.48138 * 104.62037 * 87.19050 * 19 17 15
21 21 C 1.36936 * 127.84103 * 140.41056 * 20 19 17
22 22 H 1.07998 * 119.99986 * 351.51731 * 21 20 19
23 23 C 1.38811 * 120.00191 * 171.51012 * 21 20 19
24 24 N 1.31624 * 119.99979 * 351.26865 * 23 21 20
25 25 Si 1.86799 * 119.99976 * 171.26136 * 23 21 20
26 26 H 1.48504 * 109.47255 * 90.00450 * 25 23 21
27 27 H 1.48501 * 109.47278 * 210.00392 * 25 23 21
28 28 H 1.48501 * 109.47413 * 330.00585 * 25 23 21
29 29 C 1.51833 * 104.54996 * 320.13660 * 20 19 17
30 30 C 1.53004 * 117.44318 * 175.00146 * 15 14 13
31 31 H 1.08995 * 119.53654 * 355.88221 * 30 15 14
32 32 H 1.09008 * 109.46999 * 300.00332 * 1 2 3
33 33 H 1.09003 * 109.47052 * 59.99726 * 1 2 3
34 34 H 1.08991 * 109.47284 * 180.02562 * 1 2 3
35 35 H 1.08994 * 109.47097 * 239.99668 * 2 1 3
36 36 H 1.08994 * 109.46900 * 60.00071 * 3 2 1
37 37 H 1.08998 * 109.46713 * 180.02562 * 3 2 1
38 38 H 1.09000 * 109.46608 * 299.99547 * 3 2 1
39 39 H 1.09006 * 109.45736 * 54.14262 * 5 4 2
40 40 H 1.08999 * 109.46059 * 294.17736 * 5 4 2
41 41 H 1.09007 * 109.50509 * 299.23553 * 6 5 4
42 42 H 1.08999 * 109.50463 * 179.12366 * 6 5 4
43 43 H 1.08994 * 109.52224 * 182.44023 * 7 6 5
44 44 H 1.09000 * 109.52344 * 62.24709 * 7 6 5
45 45 H 1.09008 * 109.50394 * 297.70849 * 8 7 6
46 46 H 1.09007 * 109.50282 * 177.59772 * 8 7 6
47 47 H 0.97001 * 119.99823 * 0.02562 * 13 11 9
48 48 H 1.08993 * 109.47249 * 299.99752 * 14 13 11
49 49 H 1.09004 * 109.47120 * 60.00177 * 14 13 11
50 50 H 1.09006 * 110.40265 * 205.97465 * 19 17 15
51 51 H 1.08997 * 110.40665 * 328.39997 * 19 17 15
52 52 H 0.97005 * 119.99773 * 180.02562 * 24 23 21
53 53 H 1.09003 * 111.95479 * 281.19218 * 29 20 19
54 54 H 1.09001 * 110.52793 * 157.59865 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 7 2.0196 -0.6924 1.1995
5 6 1.6427 0.0352 2.4180
6 6 2.0401 -0.7852 3.6472
7 6 3.5512 -1.0311 3.6240
8 6 3.9239 -1.7470 2.3229
9 6 3.4720 -0.8987 1.1320
10 1 3.9775 0.0665 1.1611
11 6 3.8192 -1.6089 -0.1509
12 8 3.0153 -2.3562 -0.6672
13 7 5.0209 -1.4095 -0.7277
14 6 5.3587 -2.1004 -1.9746
15 6 6.7692 -1.7012 -2.4129
16 1 7.4557 -1.4421 -1.6068
17 6 6.9079 -0.9347 -3.7298
18 1 6.0124 -0.6386 -4.2761
19 6 8.2084 -0.1396 -3.9754
20 7 9.1378 -1.1210 -4.5815
21 6 10.0288 -0.9156 -5.6009
22 1 10.0159 0.0141 -6.1503
23 6 10.9488 -1.9023 -5.9280
24 7 11.0823 -2.9597 -5.1556
25 14 11.9970 -1.7296 -7.4645
26 1 13.2553 -1.0165 -7.1276
27 1 12.3195 -3.0775 -7.9978
28 1 11.2497 -0.9575 -8.4894
29 6 8.8876 -2.4073 -3.8147
30 6 7.3539 -2.4088 -3.6370
31 1 6.7907 -3.2107 -4.1142
32 1 -0.3633 0.5139 0.8900
33 1 -0.3633 0.5139 -0.8900
34 1 -0.3633 -1.0276 0.0005
35 1 1.8933 -0.5139 -0.8899
36 1 1.6767 1.9563 0.8900
37 1 3.1300 1.4425 -0.0005
38 1 1.6768 1.9563 -0.8901
39 1 0.5652 0.1999 2.4240
40 1 2.1569 0.9960 2.4410
41 1 1.5156 -1.7407 3.6321
42 1 1.7743 -0.2379 4.5515
43 1 3.8322 -1.6518 4.4747
44 1 4.0763 -0.0775 3.6784
45 1 3.4291 -2.7177 2.2869
46 1 5.0041 -1.8869 2.2810
47 1 5.6625 -0.8092 -0.3167
48 1 5.3187 -3.1779 -1.8154
49 1 4.6450 -1.8209 -2.7497
50 1 8.0250 0.6856 -4.6637
51 1 8.6100 0.2326 -3.0330
52 1 11.7254 -3.6491 -5.3841
53 1 9.3828 -2.4059 -2.8437
54 1 9.2029 -3.2699 -4.4018
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000978799216.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:14:29
Heat of formation + Delta-G solvation = 3.767942 kcal
Electronic energy + Delta-G solvation = -29805.946619 eV
Core-core repulsion = 25971.322465 eV
Total energy + Delta-G solvation = -3834.624155 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.63096 -40.37211 -39.21077 -36.29033 -36.03468 -34.93144 -32.82287 -32.14966
-31.17852 -29.02738 -28.75254 -28.13040 -26.82482 -25.30212 -24.64012 -22.85630
-21.94109 -21.55151 -21.17066 -20.76621 -20.07221 -18.84683 -18.19075 -17.51618
-16.89826 -16.58809 -16.50801 -15.93083 -15.69195 -15.45345 -15.27124 -15.17664
-14.84956 -14.63075 -14.58398 -14.43011 -14.23153 -13.96509 -13.77805 -13.41255
-13.33941 -13.19460 -12.91821 -12.86273 -12.67808 -12.66104 -12.40822 -12.33718
-12.07058 -12.01804 -11.98532 -11.95738 -11.64129 -11.59164 -11.53875 -11.16608
-11.00054 -10.75821 -10.69939 -10.45396 -10.03880 -9.18263 -8.95087 -7.86859
-5.22424 1.46194 1.47994 1.56983 1.59826 2.01779 2.48132 2.71950
2.91184 3.28281 3.56152 3.65866 3.66573 3.83662 3.85648 3.91410
4.03891 4.09002 4.17209 4.20317 4.25636 4.30685 4.32287 4.38021
4.41038 4.57606 4.58636 4.63803 4.68348 4.73249 4.75713 4.80517
4.81680 4.92983 4.93456 4.99789 5.01633 5.05334 5.12491 5.18746
5.21609 5.25602 5.29443 5.33006 5.38186 5.44612 5.46824 5.50118
5.50420 5.73074 6.04746 6.17378 6.20700 6.57966 6.98078 7.25702
7.67906 8.45422 9.24366
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.024390 B = 0.002058 C = 0.001994
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1147.716393 B =13600.070048 C =14040.083745
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.067 3.933
3 C -0.181 4.181
4 N -0.525 5.525
5 C 0.051 3.949
6 C -0.118 4.118
7 C -0.114 4.114
8 C -0.106 4.106
9 C 0.076 3.924
10 H 0.078 0.922
11 C 0.515 3.485
12 O -0.566 6.566
13 N -0.715 5.715
14 C 0.166 3.834
15 C -0.109 4.109
16 H 0.112 0.888
17 C -0.159 4.159
18 H 0.120 0.880
19 C 0.153 3.847
20 N -0.628 5.628
21 C -0.234 4.234
22 H 0.082 0.918
23 C -0.069 4.069
24 N -0.950 5.950
25 Si 0.979 3.021
26 H -0.285 1.285
27 H -0.294 1.294
28 H -0.271 1.271
29 C 0.177 3.823
30 C -0.175 4.175
31 H 0.108 0.892
32 H 0.069 0.931
33 H 0.064 0.936
34 H 0.047 0.953
35 H 0.061 0.939
36 H 0.072 0.928
37 H 0.051 0.949
38 H 0.064 0.936
39 H 0.086 0.914
40 H 0.047 0.953
41 H 0.059 0.941
42 H 0.086 0.914
43 H 0.078 0.922
44 H 0.073 0.927
45 H 0.057 0.943
46 H 0.082 0.918
47 H 0.414 0.586
48 H 0.065 0.935
49 H 0.063 0.937
50 H 0.055 0.945
51 H 0.030 0.970
52 H 0.248 0.752
53 H 0.011 0.989
54 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.124 8.609 19.573 29.363
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.042 4.042
3 C -0.240 4.240
4 N -0.250 5.250
5 C -0.076 4.076
6 C -0.155 4.155
7 C -0.152 4.152
8 C -0.144 4.144
9 C -0.036 4.036
10 H 0.095 0.905
11 C 0.302 3.698
12 O -0.444 6.444
13 N -0.368 5.368
14 C 0.042 3.958
15 C -0.128 4.128
16 H 0.130 0.870
17 C -0.179 4.179
18 H 0.138 0.862
19 C 0.027 3.973
20 N -0.353 5.353
21 C -0.363 4.363
22 H 0.100 0.900
23 C -0.261 4.261
24 N -0.599 5.599
25 Si 0.807 3.193
26 H -0.212 1.212
27 H -0.220 1.220
28 H -0.196 1.196
29 C 0.053 3.947
30 C -0.195 4.195
31 H 0.126 0.874
32 H 0.087 0.913
33 H 0.083 0.917
34 H 0.066 0.934
35 H 0.079 0.921
36 H 0.091 0.909
37 H 0.070 0.930
38 H 0.083 0.917
39 H 0.104 0.896
40 H 0.065 0.935
41 H 0.078 0.922
42 H 0.105 0.895
43 H 0.096 0.904
44 H 0.092 0.908
45 H 0.076 0.924
46 H 0.100 0.900
47 H 0.250 0.750
48 H 0.083 0.917
49 H 0.081 0.919
50 H 0.074 0.926
51 H 0.047 0.953
52 H 0.058 0.942
53 H 0.029 0.971
54 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -20.719 7.541 19.049 29.137
hybrid contribution 1.591 0.593 -1.073 2.009
sum -19.128 8.133 17.975 27.479
Atomic orbital electron populations
1.21750 0.93336 1.01769 1.02339 1.21786 0.96877 0.92625 0.92878
1.22440 1.01095 0.97190 1.03254 1.61911 1.10325 1.49958 1.02834
1.22275 1.01531 0.95263 0.88547 1.21628 0.96035 1.00613 0.97255
1.21562 0.96331 1.01017 0.96291 1.21562 1.01302 0.98563 0.93020
1.21593 0.90655 0.98873 0.92468 0.90470 1.20942 0.81074 0.81729
0.86105 1.90692 1.49760 1.38683 1.65235 1.45974 1.17314 1.48087
1.25440 1.20614 0.92853 0.96542 0.85795 1.22425 0.96389 1.02276
0.91691 0.87033 1.23926 0.99245 0.94283 1.00448 0.86175 1.21236
0.88244 0.91799 0.95973 1.46469 1.43118 1.07160 1.38581 1.19432
1.08491 1.01601 1.06732 0.90027 1.25618 1.00548 0.97683 1.02285
1.70031 1.38797 1.11895 1.39158 0.85078 0.78477 0.76504 0.79248
1.21201 1.22032 1.19557 1.21693 0.88857 0.90639 0.93474 1.23840
0.97103 0.96506 1.02077 0.87430 0.91252 0.91742 0.93353 0.92060
0.90878 0.93016 0.91717 0.89625 0.93467 0.92235 0.89525 0.90362
0.90785 0.92399 0.89991 0.74982 0.91668 0.91900 0.92622 0.95273
0.94236 0.97138 0.91222
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.19 9.10 71.98 0.65 -1.54 16
2 C 0.07 1.25 2.56 44.92 0.11 1.37 16
3 C -0.18 -2.62 8.46 71.98 0.61 -2.01 16
4 N -0.52 -9.56 4.21 -850.40 -3.58 -13.14 16
5 C 0.05 0.64 4.57 86.32 0.39 1.03 16
6 C -0.12 -1.28 6.09 30.64 0.19 -1.09 16
7 C -0.11 -1.20 6.00 30.67 0.18 -1.02 16
8 C -0.11 -1.60 5.35 30.64 0.16 -1.44 16
9 C 0.08 1.33 1.88 44.19 0.08 1.41 16
10 H 0.08 1.08 6.84 -2.39 -0.02 1.06 16
11 C 0.51 12.25 5.82 87.65 0.51 12.76 16
12 O -0.57 -18.44 15.25 -3.06 -0.05 -18.49 16
13 N -0.72 -14.88 5.56 -463.06 -2.57 -17.46 16
14 C 0.17 4.17 5.95 86.38 0.51 4.68 16
15 C -0.11 -3.06 5.38 -10.79 -0.06 -3.12 16
16 H 0.11 3.00 8.04 -2.38 -0.02 2.98 16
17 C -0.16 -5.27 6.74 -9.88 -0.07 -5.33 16
18 H 0.12 3.60 8.12 -2.39 -0.02 3.58 16
19 C 0.15 6.10 7.05 86.54 0.61 6.72 16
20 N -0.63 -32.22 3.46 -678.15 -2.35 -34.57 16
21 C -0.23 -13.11 10.39 84.03 0.87 -12.24 16
22 H 0.08 4.37 7.84 -2.91 -0.02 4.35 16
23 C -0.07 -3.90 5.45 84.86 0.46 -3.44 16
24 N -0.95 -56.88 10.49 21.65 0.23 -56.65 16
25 Si 0.98 45.67 29.56 68.60 2.03 47.70 16
26 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16
27 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16
28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
29 C 0.18 8.62 6.10 85.79 0.52 9.14 16
30 C -0.17 -6.49 6.76 -9.88 -0.07 -6.55 16
31 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16
32 H 0.07 0.88 6.40 -2.38 -0.02 0.87 16
33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16
35 H 0.06 1.57 5.75 -2.39 -0.01 1.55 16
36 H 0.07 0.85 6.47 -2.39 -0.02 0.83 16
37 H 0.05 0.76 6.78 -2.39 -0.02 0.75 16
38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
39 H 0.09 0.99 6.17 -2.38 -0.01 0.98 16
40 H 0.05 0.51 6.58 -2.39 -0.02 0.49 16
41 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16
42 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16
43 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16
44 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16
45 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16
46 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16
47 H 0.41 6.42 8.40 -92.71 -0.78 5.64 16
48 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16
49 H 0.06 1.69 7.94 -2.39 -0.02 1.67 16
50 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16
51 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16
52 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16
53 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16
54 H 0.07 3.89 6.08 -2.39 -0.01 3.88 16
Total: -1.00 -70.26 407.21 -0.50 -70.77
By element:
Atomic # 1 Polarization: 22.41 SS G_CDS: 0.10 Total: 22.50 kcal
Atomic # 6 Polarization: -6.35 SS G_CDS: 5.69 Total: -0.66 kcal
Atomic # 7 Polarization: -113.55 SS G_CDS: -8.27 Total: -121.82 kcal
Atomic # 8 Polarization: -18.44 SS G_CDS: -0.05 Total: -18.49 kcal
Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal
Total: -70.26 -0.50 -70.77 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000978799216.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.533 kcal
(2) G-P(sol) polarization free energy of solvation -70.262 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.271 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.503 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.765 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.768 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds