Wall clock time and date at job start Tue Mar 31 2020 19:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.41639 * 2 1 4 4 C 1.54905 * 110.37448 * 237.68930 * 2 1 3 5 5 C 1.55135 * 101.65246 * 204.09772 * 4 2 1 6 6 C 1.54323 * 103.01898 * 35.65255 * 5 4 2 7 7 H 1.08998 * 109.88670 * 97.12210 * 6 5 4 8 8 C 1.53000 * 110.01942 * 218.23298 * 6 5 4 9 9 N 1.47442 * 107.23274 * 337.71395 * 6 5 4 10 10 C 1.46892 * 111.00008 * 236.74365 * 9 6 5 11 11 C 1.50696 * 109.47467 * 70.92266 * 10 9 6 12 12 O 1.21280 * 119.99795 * 354.35319 * 11 10 9 13 13 N 1.34771 * 120.00437 * 174.35115 * 11 10 9 14 14 C 1.47674 * 134.45530 * 180.02562 * 13 11 10 15 15 C 1.53456 * 85.96756 * 155.69687 * 14 13 11 16 16 C 1.47671 * 134.45315 * 359.97436 * 13 11 10 17 17 C 1.52635 * 113.67292 * 137.87575 * 15 14 13 18 18 C 1.53187 * 109.37416 * 74.07409 * 17 15 14 19 19 C 1.53186 * 109.32597 * 59.03124 * 18 17 15 20 20 N 1.46891 * 109.10840 * 303.54974 * 19 18 17 21 21 C 1.36937 * 120.69246 * 235.39124 * 20 19 18 22 22 H 1.07999 * 119.99907 * 30.43540 * 21 20 19 23 23 C 1.38811 * 120.00007 * 210.42755 * 21 20 19 24 24 N 1.31620 * 119.99998 * 11.14865 * 23 21 20 25 25 Si 1.86798 * 119.99883 * 191.14123 * 23 21 20 26 26 H 1.48497 * 109.47150 * 90.00509 * 25 23 21 27 27 H 1.48497 * 109.47048 * 210.00521 * 25 23 21 28 28 H 1.48504 * 109.47199 * 330.00380 * 25 23 21 29 29 C 1.47116 * 118.61929 * 55.36204 * 20 19 18 30 30 H 1.09003 * 109.46950 * 302.71510 * 1 2 3 31 31 H 1.08998 * 109.47533 * 62.72233 * 1 2 3 32 32 H 1.09009 * 109.46732 * 182.72631 * 1 2 3 33 33 H 1.08998 * 110.99213 * 86.00142 * 4 2 1 34 34 H 1.09004 * 111.01876 * 322.20079 * 4 2 1 35 35 H 1.08996 * 110.70451 * 277.26554 * 5 4 2 36 36 H 1.09000 * 110.85667 * 154.10465 * 5 4 2 37 37 H 1.09001 * 109.47077 * 171.12684 * 8 6 5 38 38 H 1.08993 * 109.47522 * 291.12614 * 8 6 5 39 39 H 1.09001 * 109.47025 * 51.13255 * 8 6 5 40 40 H 1.09006 * 109.47188 * 310.92337 * 10 9 6 41 41 H 1.09001 * 109.46972 * 190.92568 * 10 9 6 42 42 H 1.08996 * 113.79030 * 41.43426 * 14 13 11 43 43 H 1.09000 * 113.79198 * 269.96189 * 14 13 11 44 44 H 1.09003 * 113.79368 * 90.03889 * 16 13 11 45 45 H 1.08998 * 113.79192 * 318.56712 * 16 13 11 46 46 H 1.09005 * 109.49203 * 194.04851 * 17 15 14 47 47 H 1.09002 * 109.49418 * 314.09272 * 17 15 14 48 48 H 1.09000 * 109.49094 * 179.02440 * 18 17 15 49 49 H 1.09004 * 109.48721 * 299.09020 * 18 17 15 50 50 H 1.09001 * 109.53403 * 183.65861 * 19 18 17 51 51 H 1.09001 * 109.59185 * 63.47606 * 19 18 17 52 52 H 0.96994 * 119.99700 * 179.97438 * 24 23 21 53 53 H 1.09002 * 109.64060 * 188.92701 * 29 20 19 54 54 H 1.09007 * 109.80486 * 68.41174 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7762 -1.2273 5 6 3.4786 -1.1994 -0.7358 6 6 3.2536 -1.4806 0.7648 7 1 3.1056 -2.5487 0.9237 8 6 4.4576 -0.9959 1.5748 9 7 2.0448 -0.7408 1.1713 10 6 2.3358 0.1718 2.2850 11 6 3.1792 1.3176 1.7885 12 8 3.5915 1.3173 0.6479 13 7 3.4754 2.3427 2.6117 14 6 4.2498 3.5921 2.4704 15 6 3.3845 4.1306 3.6177 16 6 3.1548 2.6670 4.0163 17 6 4.1690 4.9329 4.6525 18 6 4.5283 6.3025 4.0678 19 6 3.2434 7.0418 3.6816 20 7 2.4742 6.2120 2.7448 21 6 2.0976 6.7029 1.5232 22 1 2.7121 7.4371 1.0235 23 6 0.9261 6.2568 0.9271 24 7 0.0688 5.5363 1.6187 25 14 0.5663 6.6791 -0.8566 26 1 1.1239 5.6218 -1.7378 27 1 -0.9023 6.7674 -1.0578 28 1 1.1912 7.9837 -1.1922 29 6 2.1175 4.8423 3.1461 30 1 -0.3633 0.5554 0.8647 31 1 -0.3634 0.4710 -0.9133 32 1 -0.3633 -1.0266 0.0489 33 1 2.1388 -0.1271 -2.1002 34 1 1.4518 -1.6488 -1.4403 35 1 4.1941 -0.3887 -0.8730 36 1 3.8150 -2.0995 -1.2504 37 1 4.2266 -1.0528 2.6385 38 1 5.3200 -1.6256 1.3562 39 1 4.6840 0.0362 1.3070 40 1 2.8762 -0.3663 3.0639 41 1 1.4012 0.5581 2.6919 42 1 4.0897 4.1037 1.5214 43 1 5.3041 3.4874 2.7265 44 1 3.8830 2.2868 4.7327 45 1 2.1250 2.4438 4.2950 46 1 3.5598 5.0676 5.5464 47 1 5.0821 4.3973 4.9121 48 1 5.0736 6.8837 4.8114 49 1 5.1505 6.1682 3.1829 50 1 3.4969 7.9891 3.2058 51 1 2.6478 7.2306 4.5748 52 1 -0.7500 5.2249 1.2022 53 1 1.6936 4.3098 2.2946 54 1 1.3906 4.8727 3.9579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982162285.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:38 Heat of formation + Delta-G solvation = 34.172383 kcal Electronic energy + Delta-G solvation = -32240.350548 eV Core-core repulsion = 28407.044828 eV Total energy + Delta-G solvation = -3833.305719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.26354 -41.04092 -38.54888 -37.24933 -34.72668 -33.93617 -33.16806 -32.08857 -31.27636 -29.11766 -28.42746 -27.33498 -27.06649 -26.04163 -24.68434 -23.95082 -22.30987 -21.90480 -20.95283 -19.83505 -19.42412 -18.58228 -18.16132 -17.54997 -17.07472 -16.75229 -16.63870 -16.09285 -15.75290 -15.44054 -15.25340 -15.21703 -14.69630 -14.55885 -14.22186 -14.14376 -14.00266 -13.84466 -13.58656 -13.50273 -13.24447 -13.08349 -12.94410 -12.79997 -12.64166 -12.59521 -12.54898 -12.35548 -12.28475 -12.01510 -11.86291 -11.79557 -11.71292 -11.56141 -11.44310 -11.28069 -11.24588 -11.04098 -10.76817 -10.57312 -9.66622 -9.13926 -8.63325 -7.90884 -5.37520 1.35801 1.39810 1.45271 1.61329 1.91089 2.43943 2.88504 3.23361 3.42252 3.48336 3.69063 3.73442 3.86000 4.02253 4.04407 4.14169 4.25452 4.27321 4.34889 4.37224 4.41122 4.45474 4.46708 4.54848 4.57057 4.60923 4.64288 4.72798 4.77142 4.80847 4.82466 4.88564 4.91137 4.95727 4.98742 5.05967 5.09585 5.13253 5.18923 5.19801 5.23451 5.30589 5.35927 5.39091 5.50022 5.53060 5.57247 5.67770 5.77303 5.95938 6.01686 6.38510 6.82182 7.14474 7.16905 7.86753 8.36318 9.13935 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.011142 B = 0.004795 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.497260 B = 5837.667276 C = 7512.939841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.046 3.954 3 H 0.051 0.949 4 C -0.114 4.114 5 C -0.125 4.125 6 C 0.075 3.925 7 H 0.098 0.902 8 C -0.194 4.194 9 N -0.496 5.496 10 C 0.034 3.966 11 C 0.502 3.498 12 O -0.570 6.570 13 N -0.639 5.639 14 C 0.124 3.876 15 C -0.107 4.107 16 C 0.117 3.883 17 C -0.087 4.087 18 C -0.125 4.125 19 C 0.137 3.863 20 N -0.609 5.609 21 C -0.255 4.255 22 H 0.060 0.940 23 C -0.042 4.042 24 N -0.927 5.927 25 Si 0.950 3.050 26 H -0.299 1.299 27 H -0.290 1.290 28 H -0.266 1.266 29 C 0.211 3.789 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.136 0.864 41 H 0.098 0.902 42 H 0.034 0.966 43 H 0.100 0.900 44 H 0.127 0.873 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.048 0.952 50 H 0.045 0.955 51 H 0.018 0.982 52 H 0.247 0.753 53 H 0.046 0.954 54 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.521 -13.513 6.914 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.062 4.062 3 H 0.069 0.931 4 C -0.152 4.152 5 C -0.163 4.163 6 C -0.033 4.033 7 H 0.116 0.884 8 C -0.251 4.251 9 N -0.218 5.218 10 C -0.098 4.098 11 C 0.293 3.707 12 O -0.453 6.453 13 N -0.373 5.373 14 C 0.001 3.999 15 C -0.109 4.109 16 C -0.005 4.005 17 C -0.125 4.125 18 C -0.164 4.164 19 C 0.012 3.988 20 N -0.332 5.332 21 C -0.386 4.386 22 H 0.077 0.923 23 C -0.238 4.238 24 N -0.574 5.574 25 Si 0.779 3.221 26 H -0.226 1.226 27 H -0.216 1.216 28 H -0.190 1.190 29 C 0.085 3.915 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.153 0.847 41 H 0.116 0.884 42 H 0.053 0.947 43 H 0.118 0.882 44 H 0.145 0.855 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.108 0.892 48 H 0.104 0.896 49 H 0.067 0.933 50 H 0.063 0.937 51 H 0.036 0.964 52 H 0.056 0.944 53 H 0.065 0.935 54 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 8.130 -14.069 6.315 17.434 hybrid contribution -0.125 1.343 -1.712 2.180 sum 8.006 -12.726 4.603 15.724 Atomic orbital electron populations 1.21666 0.94020 1.02315 1.00711 1.22895 0.95423 0.97704 0.90166 0.93122 1.22574 0.96635 0.99665 0.96316 1.22726 0.96858 1.01026 0.95729 1.22372 0.88225 0.98549 0.94154 0.88390 1.22917 0.98320 1.03479 1.00380 1.64090 1.27850 1.23118 1.06775 1.22554 0.99611 0.90662 0.96937 1.21887 0.80463 0.83158 0.85238 1.90599 1.55525 1.79321 1.19835 1.50285 1.51926 1.20510 1.14573 1.23045 0.96277 0.81936 0.98623 1.22687 0.97675 0.94819 0.95747 1.23483 1.02885 0.91734 0.82364 1.21306 0.99689 0.95112 0.96429 1.21910 0.97071 0.96968 1.00413 1.21096 0.92179 0.93529 0.91961 1.44232 1.63626 1.10223 1.15099 1.19385 1.01774 1.22108 0.95334 0.92280 1.25676 0.95534 1.01115 1.01466 1.70086 1.10248 1.41136 1.35889 0.85522 0.76826 0.78109 0.81621 1.22645 1.21631 1.19019 1.20170 0.90472 0.84339 0.96478 0.94146 0.92915 0.90706 0.92494 0.89600 0.93073 0.89774 0.91158 0.91635 0.91733 0.84679 0.88435 0.94718 0.88236 0.85548 0.89792 0.90931 0.89192 0.89551 0.93318 0.93654 0.96362 0.94413 0.93544 0.98154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.59 71.98 0.69 -3.14 16 2 C 0.05 1.48 2.42 45.39 0.11 1.59 16 3 H 0.05 2.12 4.84 -2.39 -0.01 2.11 16 4 C -0.11 -3.19 6.49 31.98 0.21 -2.98 16 5 C -0.13 -3.32 5.94 31.77 0.19 -3.13 16 6 C 0.07 1.85 3.71 45.26 0.17 2.01 16 7 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 8 C -0.19 -4.63 7.70 71.98 0.55 -4.08 16 9 N -0.50 -13.80 5.06 -840.33 -4.26 -18.06 16 10 C 0.03 0.92 5.31 85.56 0.45 1.37 16 11 C 0.50 17.05 5.45 87.66 0.48 17.53 16 12 O -0.57 -23.18 10.28 -3.03 -0.03 -23.21 16 13 N -0.64 -20.62 3.47 -843.33 -2.92 -23.55 16 14 C 0.12 4.25 7.63 86.30 0.66 4.91 16 15 C -0.11 -3.43 0.87 -52.04 -0.05 -3.48 16 16 C 0.12 2.93 7.75 86.29 0.67 3.60 16 17 C -0.09 -2.19 5.07 30.54 0.15 -2.04 16 18 C -0.12 -3.60 6.02 30.72 0.18 -3.41 16 19 C 0.14 5.37 6.46 86.37 0.56 5.93 16 20 N -0.61 -29.74 3.00 -699.47 -2.10 -31.84 16 21 C -0.26 -14.22 9.59 84.03 0.81 -13.41 16 22 H 0.06 3.27 7.85 -2.91 -0.02 3.24 16 23 C -0.04 -2.41 5.04 84.86 0.43 -1.98 16 24 N -0.93 -55.34 11.06 21.65 0.24 -55.10 16 25 Si 0.95 47.20 29.57 68.60 2.03 49.22 16 26 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 27 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 28 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 29 C 0.21 9.63 4.29 86.19 0.37 10.00 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 2.04 8.06 -2.38 -0.02 2.02 16 35 H 0.05 1.65 6.73 -2.39 -0.02 1.64 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 37 H 0.07 1.43 5.89 -2.39 -0.01 1.41 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.99 4.05 -2.57 -0.01 1.98 16 40 H 0.14 2.81 5.83 -2.38 -0.01 2.80 16 41 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.03 1.54 8.09 -2.39 -0.02 1.52 16 43 H 0.10 2.80 8.07 -2.39 -0.02 2.78 16 44 H 0.13 2.07 8.09 -2.39 -0.02 2.05 16 45 H 0.08 2.08 8.09 -2.39 -0.02 2.06 16 46 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.09 1.65 8.12 -2.39 -0.02 1.63 16 48 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.05 1.51 7.94 -2.39 -0.02 1.49 16 50 H 0.04 1.79 7.93 -2.39 -0.02 1.77 16 51 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 52 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 53 H 0.05 2.54 6.05 -2.39 -0.01 2.53 16 54 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 Total: -1.00 -70.41 394.73 0.45 -69.95 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.86 Total: 23.28 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 6.63 Total: 9.30 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -9.04 Total: -128.54 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.03 Total: -23.21 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal Total: -70.41 0.45 -69.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982162285.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.123 kcal (2) G-P(sol) polarization free energy of solvation -70.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds