Wall clock time and date at job start Tue Mar 31 2020 19:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.99391 * 2 1 4 4 C 1.54324 * 109.87953 * 238.90417 * 2 1 3 5 5 C 1.55152 * 102.94312 * 262.77286 * 4 2 1 6 6 H 1.09004 * 111.00501 * 82.57486 * 5 4 2 7 7 N 1.46503 * 111.03592 * 206.40985 * 5 4 2 8 8 C 1.36945 * 119.99504 * 201.79467 * 7 5 4 9 9 H 1.07993 * 120.00139 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99217 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99649 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00375 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.46964 * 90.00237 * 12 10 8 14 14 H 1.48507 * 109.47023 * 209.99588 * 12 10 8 15 15 H 1.48489 * 109.47318 * 329.99882 * 12 10 8 16 16 C 1.54908 * 101.58226 * 324.50094 * 5 4 2 17 17 N 1.47023 * 109.88496 * 121.09776 * 2 1 3 18 18 C 1.34772 * 125.64416 * 300.43598 * 17 2 1 19 19 O 1.21282 * 119.99673 * 174.23497 * 18 17 2 20 20 C 1.50699 * 120.00639 * 354.23985 * 18 17 2 21 21 C 1.53122 * 109.51976 * 292.00323 * 20 18 17 22 22 C 1.53052 * 109.27008 * 182.50081 * 21 20 18 23 23 N 1.46844 * 109.57840 * 59.08448 * 22 21 20 24 24 C 1.46895 * 110.99995 * 174.18989 * 23 22 21 25 25 C 1.53003 * 109.47100 * 294.20671 * 24 23 22 26 26 C 1.53003 * 117.49994 * 243.74892 * 25 24 23 27 27 C 1.52996 * 117.49843 * 175.08975 * 25 24 23 28 28 C 1.46849 * 111.19685 * 298.28676 * 23 22 21 29 29 C 1.53040 * 109.52129 * 61.74362 * 28 23 22 30 30 H 1.09000 * 109.47142 * 310.90427 * 1 2 3 31 31 H 1.08992 * 109.47460 * 70.90913 * 1 2 3 32 32 H 1.09001 * 109.46833 * 190.91428 * 1 2 3 33 33 H 1.08998 * 110.71986 * 144.41031 * 4 2 1 34 34 H 1.09004 * 110.71984 * 21.13764 * 4 2 1 35 35 H 0.96992 * 120.00256 * 21.80152 * 7 5 4 36 36 H 0.96995 * 120.00059 * 179.97438 * 11 10 8 37 37 H 1.09004 * 110.36911 * 155.85086 * 16 5 4 38 38 H 1.09002 * 110.36190 * 278.05969 * 16 5 4 39 39 H 1.09001 * 109.52104 * 52.12722 * 20 18 17 40 40 H 1.08996 * 109.50117 * 302.37753 * 21 20 18 41 41 H 1.08997 * 109.50566 * 62.49948 * 21 20 18 42 42 H 1.08998 * 109.41163 * 299.06117 * 22 21 20 43 43 H 1.09004 * 109.44751 * 179.12675 * 22 21 20 44 44 H 1.08994 * 109.47449 * 54.21196 * 24 23 22 45 45 H 1.09004 * 109.46866 * 174.21008 * 24 23 22 46 46 H 1.09000 * 115.54665 * 29.42084 * 25 24 23 47 47 H 1.08999 * 117.49794 * 359.97438 * 26 25 24 48 48 H 1.09000 * 117.49725 * 145.02602 * 26 25 24 49 49 H 1.09000 * 117.50034 * 214.98509 * 27 25 24 50 50 H 1.09003 * 117.49845 * 359.97438 * 27 25 24 51 51 H 1.08995 * 109.46076 * 301.72990 * 28 23 22 52 52 H 1.09002 * 109.45086 * 181.74740 * 28 23 22 53 53 H 1.09004 * 109.50383 * 180.88308 * 29 28 23 54 54 H 1.09000 * 109.50986 * 60.76142 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 6 2.3518 -2.1694 -0.6924 6 1 1.4451 -2.7737 -0.6604 7 7 3.3934 -2.8320 -1.4815 8 6 3.4967 -4.1975 -1.4697 9 1 2.8101 -4.7859 -0.8792 10 6 4.4838 -4.8251 -2.2170 11 7 4.5829 -6.1376 -2.2061 12 14 5.6717 -3.8073 -3.2379 13 1 6.8603 -3.4626 -2.4170 14 1 6.1002 -4.5897 -4.4252 15 1 4.9992 -2.5605 -3.6831 16 6 2.8568 -1.8498 0.7367 17 7 2.0301 -0.7141 1.1839 18 6 1.7755 -0.3844 2.4656 19 8 2.1544 -1.1058 3.3640 20 6 1.0200 0.8803 2.7827 21 6 1.8787 2.0944 2.4177 22 6 1.1318 3.3746 2.7995 23 7 0.8475 3.3673 4.2402 24 6 0.2539 4.6417 4.6661 25 6 1.2803 5.7638 4.4977 26 6 1.7523 6.4850 5.7619 27 6 0.8160 7.1940 4.7802 28 6 -0.0155 2.2367 4.6054 29 6 0.6977 0.9226 4.2790 30 1 -0.3633 0.6729 0.7767 31 1 -0.3634 0.3361 -0.9711 32 1 -0.3633 -1.0091 0.1946 33 1 2.9656 -0.2832 -1.6183 34 1 1.2916 -0.7890 -2.0201 35 1 4.0097 -2.3035 -2.0121 36 1 5.2724 -6.5762 -2.7285 37 1 2.7089 -2.7080 1.3922 38 1 3.9097 -1.5686 0.7129 39 1 0.0930 0.9043 2.2096 40 1 2.8226 2.0490 2.9609 41 1 2.0748 2.0924 1.3455 42 1 0.1950 3.4266 2.2447 43 1 1.7472 4.2404 2.5551 44 1 -0.6227 4.8564 4.0550 45 1 -0.0410 4.5732 5.7132 46 1 2.0080 5.6193 3.6992 47 1 1.3314 6.1603 6.7134 48 1 2.7906 6.8154 5.7948 49 1 1.2386 7.9906 4.1677 50 1 -0.2207 7.3356 5.0855 51 1 -0.9469 2.2940 4.0421 52 1 -0.2334 2.2763 5.6727 53 1 0.0506 0.0838 4.5356 54 1 1.6225 0.8582 4.8523 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989663865.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:49 Heat of formation + Delta-G solvation = -9.573655 kcal Electronic energy + Delta-G solvation = -30012.962160 eV Core-core repulsion = 26177.759470 eV Total energy + Delta-G solvation = -3835.202690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.69189 -39.98156 -38.90087 -37.73593 -36.28466 -34.41982 -33.50184 -32.33718 -31.88208 -30.67610 -28.22040 -26.83213 -25.85169 -24.62935 -24.26007 -23.19267 -23.02689 -21.84027 -21.11212 -20.77956 -20.17465 -19.62339 -18.07828 -17.48712 -17.14364 -16.54439 -16.39859 -16.06106 -15.99104 -15.63088 -15.54062 -15.33010 -14.77695 -14.71570 -14.62250 -14.32230 -14.20704 -14.07752 -13.87761 -13.63870 -13.34629 -13.20531 -13.11338 -12.98869 -12.84847 -12.45795 -12.33621 -12.29240 -12.21410 -12.16108 -12.06000 -11.99417 -11.84660 -11.59134 -11.41327 -11.19995 -11.10225 -11.06536 -10.83025 -10.71898 -9.72673 -9.36820 -9.18708 -8.05059 -5.41733 1.37339 1.42684 1.49516 1.58774 1.94928 2.47066 2.76023 3.12438 3.23141 3.38990 3.46413 3.62902 3.78520 3.79461 3.87127 3.91911 4.06148 4.07558 4.17330 4.19374 4.25563 4.28432 4.34048 4.40919 4.42993 4.44576 4.51051 4.63127 4.68269 4.75132 4.76342 4.79795 4.82568 4.84761 4.89734 4.92913 4.98328 4.99447 5.09137 5.13324 5.16126 5.18387 5.21241 5.30505 5.31961 5.37538 5.38496 5.47623 5.73276 6.17740 6.18247 6.19966 6.59128 7.03396 7.15082 7.76092 7.97008 9.16104 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.002238 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.603009 B =12508.133615 C =12833.338159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.127 3.873 3 H 0.108 0.892 4 C -0.127 4.127 5 C 0.171 3.829 6 H 0.058 0.942 7 N -0.737 5.737 8 C -0.239 4.239 9 H 0.051 0.949 10 C -0.064 4.064 11 N -0.983 5.983 12 Si 0.959 3.041 13 H -0.282 1.282 14 H -0.296 1.296 15 H -0.240 1.240 16 C 0.089 3.911 17 N -0.609 5.609 18 C 0.524 3.476 19 O -0.595 6.595 20 C -0.099 4.099 21 C -0.103 4.103 22 C 0.062 3.938 23 N -0.553 5.553 24 C 0.091 3.909 25 C -0.155 4.155 26 C -0.184 4.184 27 C -0.173 4.173 28 C 0.066 3.934 29 C -0.095 4.095 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.371 0.629 36 H 0.259 0.741 37 H 0.034 0.966 38 H 0.055 0.945 39 H 0.122 0.878 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.076 0.924 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.099 0.901 50 H 0.100 0.900 51 H 0.049 0.951 52 H 0.083 0.917 53 H 0.064 0.936 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.170 31.802 9.256 35.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.025 3.975 3 H 0.126 0.874 4 C -0.166 4.166 5 C 0.061 3.939 6 H 0.076 0.924 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.069 0.931 10 C -0.255 4.255 11 N -0.632 5.632 12 Si 0.786 3.214 13 H -0.209 1.209 14 H -0.222 1.222 15 H -0.164 1.164 16 C -0.038 4.038 17 N -0.342 5.342 18 C 0.314 3.686 19 O -0.476 6.476 20 C -0.120 4.120 21 C -0.141 4.141 22 C -0.066 4.066 23 N -0.278 5.278 24 C -0.036 4.036 25 C -0.173 4.173 26 C -0.221 4.221 27 C -0.211 4.211 28 C -0.062 4.062 29 C -0.134 4.134 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.206 0.794 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.122 0.878 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.068 0.932 52 H 0.101 0.899 53 H 0.083 0.917 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.608 31.157 10.072 35.088 hybrid contribution 0.622 -0.810 -0.630 1.200 sum -11.986 30.346 9.442 33.966 Atomic orbital electron populations 1.22417 0.93152 1.02346 1.04571 1.21955 0.95686 0.96826 0.83043 0.87442 1.23018 1.03149 0.93204 0.97196 1.21376 0.90714 0.93508 0.88286 0.92422 1.42545 1.37466 1.02826 1.55078 1.18986 1.12246 0.82888 1.22908 0.93078 1.25599 1.01312 0.96580 1.02027 1.69903 1.37309 1.09399 1.46619 0.85353 0.79018 0.79037 0.78015 1.20857 1.22229 1.16393 1.22894 0.94597 0.88241 0.98019 1.48686 1.49945 1.29779 1.05761 1.21121 0.79355 0.87625 0.80457 1.90673 1.55411 1.54746 1.46775 1.21609 1.00163 0.91035 0.99189 1.21601 0.98147 0.92230 1.02136 1.22102 0.99747 0.97379 0.87340 1.61819 1.46751 1.02772 1.16430 1.21625 0.94348 0.86981 1.00683 1.22306 1.01965 0.92588 1.00490 1.23057 1.00020 1.04618 0.94395 1.23042 1.00298 0.94596 1.03140 1.22013 0.93700 0.88958 1.01495 1.21366 1.00956 0.97393 0.93649 0.90414 0.88437 0.93656 0.89549 0.87616 0.79417 0.93253 0.94721 0.92706 0.86015 0.92803 0.89115 0.92987 0.89241 0.93584 0.90572 0.87795 0.88781 0.89057 0.88219 0.88157 0.93241 0.89880 0.91704 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 8.90 71.98 0.64 -1.91 16 2 C 0.13 2.53 3.02 45.34 0.14 2.67 16 3 H 0.11 1.54 5.83 -2.39 -0.01 1.53 16 4 C -0.13 -3.03 6.13 31.78 0.19 -2.83 16 5 C 0.17 6.22 3.70 46.38 0.17 6.39 16 6 H 0.06 2.26 8.11 -2.38 -0.02 2.25 16 7 N -0.74 -33.09 5.07 -316.37 -1.60 -34.69 16 8 C -0.24 -13.60 10.46 84.03 0.88 -12.72 16 9 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 10 C -0.06 -3.73 5.50 84.86 0.47 -3.27 16 11 N -0.98 -63.34 13.97 21.65 0.30 -63.04 16 12 Si 0.96 44.47 27.74 68.60 1.90 46.37 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 15 H -0.24 -9.58 6.52 99.48 0.65 -8.93 16 16 C 0.09 3.35 6.63 86.86 0.58 3.93 16 17 N -0.61 -17.81 3.08 -788.07 -2.43 -20.24 16 18 C 0.52 16.14 6.89 87.66 0.60 16.75 16 19 O -0.60 -24.57 16.17 -3.04 -0.05 -24.62 16 20 C -0.10 -2.00 1.92 -11.46 -0.02 -2.03 16 21 C -0.10 -1.70 5.27 30.65 0.16 -1.54 16 22 C 0.06 0.77 5.30 86.33 0.46 1.23 16 23 N -0.55 -8.06 4.66 -896.34 -4.18 -12.23 16 24 C 0.09 1.03 5.24 86.31 0.45 1.49 16 25 C -0.16 -1.75 5.66 -10.79 -0.06 -1.81 16 26 C -0.18 -2.05 10.18 30.62 0.31 -1.74 16 27 C -0.17 -1.56 10.25 30.62 0.31 -1.25 16 28 C 0.07 0.97 5.46 86.33 0.47 1.44 16 29 C -0.10 -2.01 4.75 30.65 0.15 -1.86 16 30 H 0.08 0.91 5.17 -2.39 -0.01 0.90 16 31 H 0.10 1.03 7.96 -2.39 -0.02 1.01 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.92 8.00 -2.39 -0.02 1.90 16 34 H 0.11 2.10 7.71 -2.39 -0.02 2.08 16 35 H 0.37 15.52 5.60 -92.71 -0.52 15.00 16 36 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 37 H 0.03 1.55 7.98 -2.39 -0.02 1.53 16 38 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.12 1.88 4.92 -2.39 -0.01 1.87 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 1.21 5.56 -2.39 -0.01 1.19 16 42 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.09 0.98 6.16 -2.39 -0.01 0.97 16 44 H 0.05 0.45 8.12 -2.39 -0.02 0.43 16 45 H 0.08 0.85 7.72 -2.39 -0.02 0.83 16 46 H 0.10 1.27 6.33 -2.39 -0.02 1.25 16 47 H 0.09 1.02 8.03 -2.39 -0.02 1.00 16 48 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 52 H 0.08 1.14 8.02 -2.39 -0.02 1.12 16 53 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 54 H 0.05 1.42 7.94 -2.39 -0.02 1.40 16 Total: -1.00 -76.40 405.48 0.15 -76.24 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.30 Total: 29.28 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 5.90 Total: 2.92 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -7.90 Total: -130.20 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.05 Total: -24.62 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.90 Total: 46.37 kcal Total: -76.40 0.15 -76.24 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989663865.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.671 kcal (2) G-P(sol) polarization free energy of solvation -76.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds