Wall clock time and date at job start Tue Mar 31 2020 19:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47090 * 2 1 4 4 N 1.46907 * 109.47039 * 119.99725 * 2 1 3 5 5 C 1.47442 * 110.99591 * 54.15647 * 4 2 1 6 6 C 1.54317 * 107.23033 * 123.25909 * 5 4 2 7 7 C 1.55137 * 103.02030 * 22.28133 * 6 5 4 8 8 C 1.47847 * 111.00036 * 174.99816 * 4 2 1 9 9 H 1.09001 * 110.37215 * 332.58320 * 8 4 2 10 10 C 1.50697 * 110.36957 * 94.80427 * 8 4 2 11 11 O 1.21279 * 120.00420 * 0.02562 * 10 8 4 12 12 N 1.34779 * 119.99505 * 180.02562 * 10 8 4 13 13 C 1.46505 * 120.00064 * 180.02562 * 12 10 8 14 14 C 1.51230 * 111.06315 * 281.62378 * 13 12 10 15 15 C 1.55692 * 104.60324 * 275.45268 * 14 13 12 16 16 C 1.56281 * 105.93766 * 352.75639 * 15 14 13 17 17 C 1.50876 * 102.24239 * 336.01111 * 16 15 14 18 18 H 1.09007 * 107.58001 * 292.61527 * 17 16 15 19 19 N 1.42706 * 128.63860 * 160.38782 * 17 16 15 20 20 C 1.36935 * 127.09823 * 28.56929 * 19 17 16 21 21 H 1.08000 * 120.00187 * 340.96163 * 20 19 17 22 22 C 1.38817 * 119.99726 * 160.96048 * 20 19 17 23 23 N 1.31625 * 119.99826 * 170.63054 * 22 20 19 24 24 Si 1.86797 * 120.00158 * 350.62597 * 22 20 19 25 25 H 1.48499 * 109.47276 * 185.26812 * 24 22 20 26 26 H 1.48502 * 109.46766 * 65.26762 * 24 22 20 27 27 H 1.48497 * 109.47265 * 305.26883 * 24 22 20 28 28 C 1.49290 * 105.79771 * 208.31066 * 19 17 16 29 29 C 1.52138 * 111.08416 * 61.00912 * 13 12 10 30 30 H 1.09010 * 109.47440 * 299.99994 * 1 2 3 31 31 H 1.09000 * 109.47138 * 60.00179 * 1 2 3 32 32 H 1.08996 * 109.47462 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47315 * 239.99724 * 2 1 3 34 34 H 1.08999 * 109.46764 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46984 * 299.99915 * 3 2 1 36 36 H 1.08998 * 109.47480 * 60.00198 * 3 2 1 37 37 H 1.09001 * 109.88788 * 242.66003 * 5 4 2 38 38 H 1.08995 * 109.89319 * 3.85033 * 5 4 2 39 39 H 1.09003 * 110.70676 * 140.66500 * 6 5 4 40 40 H 1.09003 * 110.70841 * 263.89711 * 6 5 4 41 41 H 1.09007 * 110.99117 * 206.25434 * 7 6 5 42 42 H 1.09000 * 110.99471 * 82.44083 * 7 6 5 43 43 H 0.96994 * 120.00277 * 0.02562 * 12 10 8 44 44 H 1.08992 * 110.40969 * 34.23501 * 14 13 12 45 45 H 1.09002 * 110.40764 * 156.67820 * 14 13 12 46 46 H 1.08998 * 110.15868 * 111.86694 * 15 14 13 47 47 H 1.08998 * 110.16103 * 233.56594 * 15 14 13 48 48 H 1.08992 * 110.97547 * 93.85578 * 16 15 14 49 49 H 1.09005 * 110.97137 * 217.59011 * 16 15 14 50 50 H 0.96996 * 120.00171 * 4.85994 * 23 22 20 51 51 H 1.09001 * 110.04809 * 128.15813 * 28 19 17 52 52 H 1.08994 * 110.05061 * 249.63736 * 28 19 17 53 53 H 1.08994 * 111.15546 * 316.07284 * 29 13 12 54 54 H 1.08999 * 111.18473 * 191.86028 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4357 -2.0422 1.3057 6 6 2.6081 -3.0433 1.3740 7 6 3.7868 -2.1676 1.8747 8 6 3.4926 -0.8173 1.1751 9 1 3.8550 -0.8335 0.1472 10 6 4.1279 0.3175 1.9363 11 8 3.4318 1.1622 2.4586 12 7 5.4698 0.3937 2.0367 13 6 6.0875 1.4966 2.7773 14 6 6.1030 2.7639 1.9523 15 6 7.3837 2.6456 1.0749 16 6 8.1411 1.3792 1.5898 17 6 7.6304 1.2539 3.0039 18 1 8.0101 2.1061 3.5678 19 7 7.6463 0.1116 3.8591 20 6 8.5482 -0.9187 3.8444 21 1 9.1560 -1.0918 2.9687 22 6 8.6811 -1.7406 4.9551 23 7 9.4069 -2.8361 4.8801 24 14 7.8301 -1.2919 6.5563 25 1 8.2293 -2.2533 7.6154 26 1 6.3583 -1.3471 6.3669 27 1 8.2262 0.0813 6.9595 28 6 6.4806 0.2751 4.7773 29 6 5.6554 1.4862 4.2360 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1299 1.4424 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 0.8327 -2.1152 2.2107 38 1 0.8210 -2.2503 0.4301 39 1 2.3923 -3.8417 2.0841 40 1 2.8239 -3.4521 0.3868 41 1 4.7431 -2.5764 1.5481 42 1 3.7600 -2.0596 2.9590 43 1 6.0266 -0.2816 1.6187 44 1 5.2148 2.8186 1.3229 45 1 6.1655 3.6384 2.6000 46 1 7.1109 2.5199 0.0271 47 1 8.0059 3.5322 1.1969 48 1 7.8706 0.4990 1.0068 49 1 9.2195 1.5373 1.5764 50 1 9.9057 -3.0330 4.0718 51 1 5.8691 -0.6272 4.7691 52 1 6.8282 0.4822 5.7894 53 1 4.5846 1.3050 4.3277 54 1 5.9396 2.4113 4.7376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990634012.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:14 Heat of formation + Delta-G solvation = -3.711949 kcal Electronic energy + Delta-G solvation = -32444.043856 eV Core-core repulsion = 28609.095349 eV Total energy + Delta-G solvation = -3834.948507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.12288 -40.75582 -38.67056 -36.38216 -35.48363 -34.40055 -33.93234 -31.93093 -30.54007 -30.15046 -28.76969 -27.94843 -27.50703 -25.37395 -24.33275 -22.90241 -22.44095 -21.64327 -21.10225 -20.57387 -20.14398 -19.16730 -18.38203 -17.52742 -17.20434 -16.82006 -16.31952 -16.19936 -15.90560 -15.73940 -15.44270 -15.16432 -14.90337 -14.77690 -14.37188 -14.19117 -14.01834 -13.67413 -13.60737 -13.50574 -13.25284 -13.13557 -12.95460 -12.74520 -12.66530 -12.60075 -12.27039 -12.21909 -12.14938 -12.11711 -11.90852 -11.89767 -11.73938 -11.66424 -11.51088 -11.33690 -11.29325 -11.00967 -10.73964 -10.38904 -9.83961 -9.23092 -9.08518 -8.52748 -5.48883 1.39618 1.46061 1.66243 1.82313 2.16011 2.51050 2.87057 3.03347 3.18891 3.47720 3.56112 3.62727 3.77612 3.90563 3.97834 3.99346 4.08610 4.12373 4.14566 4.18502 4.25505 4.32635 4.41426 4.42887 4.48759 4.55259 4.62643 4.66670 4.72566 4.81619 4.84433 4.87947 4.89443 4.91811 4.92660 4.95986 4.97451 5.01525 5.04624 5.06088 5.14352 5.18968 5.25213 5.31806 5.33922 5.44183 5.46908 5.67488 5.79263 5.94896 6.12589 6.20345 6.74910 6.80452 7.47076 7.50960 8.19157 8.93448 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.004626 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.839940 B = 6051.300045 C = 7223.338025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 C -0.130 4.130 4 N -0.521 5.521 5 C 0.043 3.957 6 C -0.132 4.132 7 C -0.121 4.121 8 C 0.062 3.938 9 H 0.087 0.913 10 C 0.523 3.477 11 O -0.546 6.546 12 N -0.699 5.699 13 C 0.144 3.856 14 C -0.103 4.103 15 C -0.100 4.100 16 C -0.110 4.110 17 C 0.141 3.859 18 H 0.023 0.977 19 N -0.605 5.605 20 C -0.294 4.294 21 H 0.054 0.946 22 C -0.071 4.071 23 N -0.968 5.968 24 Si 1.105 2.895 25 H -0.312 1.312 26 H -0.268 1.268 27 H -0.284 1.284 28 C 0.110 3.890 29 C -0.117 4.117 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.398 0.602 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.058 0.942 49 H 0.062 0.938 50 H 0.249 0.751 51 H 0.033 0.967 52 H 0.028 0.972 53 H 0.079 0.921 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.867 7.340 -13.518 22.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 C -0.187 4.187 4 N -0.247 5.247 5 C -0.084 4.084 6 C -0.171 4.171 7 C -0.159 4.159 8 C -0.050 4.050 9 H 0.105 0.895 10 C 0.309 3.691 11 O -0.423 6.423 12 N -0.350 5.350 13 C 0.056 3.944 14 C -0.142 4.142 15 C -0.138 4.138 16 C -0.149 4.149 17 C 0.033 3.967 18 H 0.041 0.959 19 N -0.330 5.330 20 C -0.422 4.422 21 H 0.072 0.928 22 C -0.265 4.265 23 N -0.612 5.612 24 Si 0.935 3.065 25 H -0.241 1.241 26 H -0.194 1.194 27 H -0.211 1.211 28 C -0.014 4.014 29 C -0.155 4.155 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.233 0.767 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.058 0.942 51 H 0.051 0.949 52 H 0.045 0.955 53 H 0.097 0.903 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.763 7.675 -11.197 21.570 hybrid contribution 1.540 -0.684 -1.941 2.571 sum -15.222 6.991 -13.138 21.289 Atomic orbital electron populations 1.21896 0.92896 1.02605 1.02406 1.21857 0.96722 0.94902 0.89911 1.21747 0.99709 0.95682 1.01583 1.63148 1.03192 1.18504 1.39817 1.22917 0.96947 0.85976 1.02585 1.22782 0.93697 0.98002 1.02574 1.22630 1.00168 0.93177 0.99936 1.22394 0.90129 0.93489 0.98962 0.89523 1.20566 0.81561 0.86406 0.80551 1.90609 1.62409 1.41599 1.47683 1.45749 1.06172 1.28363 1.54729 1.21508 0.94797 0.87875 0.90201 1.21848 0.98414 0.95725 0.98227 1.22731 0.94944 0.96744 0.99412 1.21883 0.99897 0.98756 0.94360 1.21153 0.93241 0.89348 0.93000 0.95918 1.43882 1.28439 1.22423 1.38255 1.19971 1.15594 1.07295 0.99380 0.92776 1.26810 1.01092 0.94954 1.03609 1.71012 1.34062 1.25081 1.31092 0.83359 0.75970 0.74027 0.73162 1.24116 1.19372 1.21131 1.22773 0.88065 0.97264 0.93274 1.22463 0.99990 0.97770 0.95276 0.93031 0.90681 0.91447 0.93469 0.94739 0.91205 0.93260 0.90927 0.90091 0.89681 0.89624 0.90025 0.92714 0.76725 0.91541 0.89896 0.90276 0.89845 0.92317 0.91919 0.94167 0.94895 0.95457 0.90291 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.95 71.98 0.64 -1.65 16 2 C 0.07 1.49 2.38 44.91 0.11 1.60 16 3 C -0.13 -2.93 7.96 71.98 0.57 -2.35 16 4 N -0.52 -12.61 4.28 -839.96 -3.59 -16.20 16 5 C 0.04 0.83 6.14 86.65 0.53 1.36 16 6 C -0.13 -2.53 6.94 31.77 0.22 -2.31 16 7 C -0.12 -3.10 6.47 31.98 0.21 -2.89 16 8 C 0.06 1.59 2.33 44.63 0.10 1.70 16 9 H 0.09 1.96 7.69 -2.39 -0.02 1.94 16 10 C 0.52 16.31 5.16 87.66 0.45 16.76 16 11 O -0.55 -19.71 12.78 -3.03 -0.04 -19.74 16 12 N -0.70 -22.03 4.46 -419.09 -1.87 -23.90 16 13 C 0.14 4.68 0.42 4.45 0.00 4.68 16 14 C -0.10 -2.72 6.18 30.95 0.19 -2.53 16 15 C -0.10 -2.33 6.95 32.66 0.23 -2.10 16 16 C -0.11 -3.39 6.47 31.04 0.20 -3.19 16 17 C 0.14 5.26 2.71 46.71 0.13 5.39 16 18 H 0.02 0.89 8.00 -2.38 -0.02 0.87 16 19 N -0.61 -27.96 3.01 -667.27 -2.01 -29.97 16 20 C -0.29 -16.20 10.59 84.03 0.89 -15.31 16 21 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 22 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 23 N -0.97 -61.21 13.70 21.65 0.30 -60.92 16 24 Si 1.10 55.16 24.60 68.60 1.69 56.85 16 25 H -0.31 -16.06 7.11 99.48 0.71 -15.35 16 26 H -0.27 -12.37 5.58 99.48 0.56 -11.81 16 27 H -0.28 -13.48 6.79 99.48 0.68 -12.81 16 28 C 0.11 4.76 4.50 86.96 0.39 5.15 16 29 C -0.12 -4.17 6.09 31.43 0.19 -3.98 16 30 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.94 6.17 -2.39 -0.01 0.92 16 33 H 0.05 0.85 7.97 -2.39 -0.02 0.83 16 34 H 0.03 0.86 6.24 -2.39 -0.01 0.84 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 1.36 7.61 -2.39 -0.02 1.34 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.23 5.94 -2.39 -0.01 1.21 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.05 1.71 8.05 -2.39 -0.02 1.69 16 43 H 0.40 12.73 7.60 -92.71 -0.70 12.03 16 44 H 0.07 1.79 7.73 -2.39 -0.02 1.77 16 45 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.06 1.84 7.20 -2.39 -0.02 1.82 16 49 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 50 H 0.25 15.70 8.73 -92.71 -0.81 14.89 16 51 H 0.03 1.54 6.77 -2.39 -0.02 1.52 16 52 H 0.03 1.24 4.41 -2.39 -0.01 1.23 16 53 H 0.08 2.97 6.28 -2.39 -0.01 2.96 16 54 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -68.59 390.19 -0.04 -68.64 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: -0.05 Total: 28.60 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 5.53 Total: -3.35 kcal Atomic # 7 Polarization: -123.81 SS G_CDS: -7.17 Total: -130.99 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.04 Total: -19.74 kcal Atomic # 14 Polarization: 55.16 SS G_CDS: 1.69 Total: 56.85 kcal Total: -68.59 -0.04 -68.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990634012.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.923 kcal (2) G-P(sol) polarization free energy of solvation -68.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds