Wall clock time and date at job start Tue Mar 31 2020 19:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.70179 * 2 1 4 4 C 1.53190 * 109.58669 * 239.64369 * 2 1 3 5 5 H 1.08996 * 109.49822 * 65.59684 * 4 2 1 6 6 N 1.46498 * 109.49679 * 305.52677 * 4 2 1 7 7 C 1.34779 * 119.99622 * 155.00191 * 6 4 2 8 8 O 1.21282 * 120.00103 * 359.97438 * 7 6 4 9 9 C 1.51492 * 119.99808 * 180.02562 * 7 6 4 10 10 C 1.52453 * 108.85615 * 59.99572 * 9 7 6 11 11 C 1.52163 * 112.63473 * 188.93743 * 10 9 7 12 12 C 1.52269 * 112.56867 * 45.28748 * 11 10 9 13 13 N 1.45871 * 112.23299 * 312.82918 * 12 11 10 14 14 C 1.45812 * 113.92702 * 289.70741 * 13 12 11 15 15 C 1.52224 * 112.52232 * 71.11934 * 14 13 12 16 16 C 1.52144 * 112.73482 * 46.31516 * 15 14 13 17 17 C 1.46483 * 111.94086 * 58.23136 * 13 12 11 18 18 C 1.53047 * 109.31014 * 185.57723 * 4 2 1 19 19 C 1.53035 * 109.53959 * 61.36833 * 18 4 2 20 20 C 1.53196 * 109.30908 * 298.63216 * 19 18 4 21 21 N 1.46916 * 108.77689 * 54.63606 * 20 19 18 22 22 C 1.36940 * 120.63127 * 126.36834 * 21 20 19 23 23 H 1.08005 * 119.99990 * 209.05813 * 22 21 20 24 24 C 1.38809 * 120.00225 * 29.06158 * 22 21 20 25 25 N 1.31622 * 119.99469 * 15.04693 * 24 22 21 26 26 Si 1.86794 * 120.00384 * 195.04251 * 24 22 21 27 27 H 1.48502 * 109.47045 * 90.00085 * 26 24 22 28 28 H 1.48494 * 109.47320 * 209.99978 * 26 24 22 29 29 H 1.48497 * 109.47129 * 330.00182 * 26 24 22 30 30 H 1.09000 * 109.46925 * 180.35489 * 1 2 3 31 31 H 1.09001 * 109.47019 * 300.35309 * 1 2 3 32 32 H 1.08998 * 109.47119 * 60.35760 * 1 2 3 33 33 H 0.96991 * 120.00389 * 335.00005 * 6 4 2 34 34 H 1.09715 * 109.06719 * 67.51759 * 10 9 7 35 35 H 1.09707 * 109.07575 * 310.37881 * 10 9 7 36 36 H 1.08694 * 110.90964 * 280.55330 * 11 10 9 37 37 H 1.10545 * 108.07140 * 164.37742 * 11 10 9 38 38 H 1.09640 * 109.11900 * 74.03676 * 12 11 10 39 39 H 1.09601 * 109.18693 * 191.47972 * 12 11 10 40 40 H 1.09693 * 109.20341 * 309.86351 * 14 13 12 41 41 H 1.09664 * 109.25842 * 192.50460 * 14 13 12 42 42 H 1.08732 * 110.82702 * 281.37859 * 15 14 13 43 43 H 1.10589 * 107.88877 * 165.47135 * 15 14 13 44 44 H 1.09687 * 109.26107 * 193.59246 * 16 15 14 45 45 H 1.09703 * 109.24901 * 76.20959 * 16 15 14 46 46 H 1.08891 * 109.92230 * 175.66343 * 17 13 12 47 47 H 1.08884 * 109.93536 * 54.64392 * 17 13 12 48 48 H 1.09004 * 109.45521 * 181.38334 * 18 4 2 49 49 H 1.08998 * 109.46246 * 301.33989 * 18 4 2 50 50 H 1.08994 * 109.50077 * 178.68192 * 19 18 4 51 51 H 1.08997 * 109.52587 * 58.59618 * 19 18 4 52 52 H 1.08994 * 109.58693 * 294.84630 * 20 19 18 53 53 H 1.09008 * 109.70166 * 174.49482 * 20 19 18 54 54 H 0.97008 * 119.99746 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 1 1.7655 -0.1671 -2.1368 6 7 1.4514 -2.0680 -1.3070 7 6 1.3284 -2.6964 -2.4930 8 8 1.7076 -2.1536 -3.5091 9 6 0.7156 -4.0804 -2.5568 10 6 -0.7075 -4.0146 -2.0140 11 6 -1.3304 -5.3914 -1.8354 12 6 -0.3837 -6.3787 -1.1664 13 7 0.9482 -6.3557 -1.7609 14 6 1.0052 -6.9158 -3.1060 15 6 0.3323 -6.0225 -4.1386 16 6 0.7346 -4.5614 -4.0036 17 6 1.5556 -5.0245 -1.6916 18 6 3.5675 -0.8479 -1.1700 19 6 3.9569 -1.6657 0.0635 20 6 3.4650 -0.9468 1.3238 21 7 2.0226 -0.6995 1.1945 22 6 1.1537 -1.1134 2.1686 23 1 0.1361 -1.3685 1.9117 24 6 1.5806 -1.2051 3.4862 25 7 2.7031 -0.6257 3.8561 26 14 0.5621 -2.1506 4.7345 27 1 0.9977 -3.5701 4.7553 28 1 0.7519 -1.5548 6.0813 29 1 -0.8728 -2.0785 4.3590 30 1 -0.3633 -1.0276 0.0064 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8932 33 1 1.1479 -2.5019 -0.4944 34 1 -1.3265 -3.4248 -2.7016 35 1 -0.6993 -3.4938 -1.0485 36 1 -1.6867 -5.7821 -2.7850 37 1 -2.2212 -5.2836 -1.1899 38 1 -0.3071 -6.1365 -0.0999 39 1 -0.7998 -7.3893 -1.2492 40 1 0.5164 -7.8978 -3.1089 41 1 2.0534 -7.0677 -3.3905 42 1 -0.7488 -6.1318 -4.0986 43 1 0.6412 -6.3706 -5.1418 44 1 0.0508 -3.9415 -4.5963 45 1 1.7432 -4.4247 -4.4130 46 1 2.5747 -5.0614 -2.0733 47 1 1.5594 -4.6714 -0.6616 48 1 3.9378 -1.3449 -2.0668 49 1 4.0062 0.1474 -1.0993 50 1 5.0412 -1.7695 0.1037 51 1 3.4988 -2.6530 0.0056 52 1 3.9903 0.0021 1.4317 53 1 3.6521 -1.5696 2.1987 54 1 3.0013 -0.6894 4.7770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993489590.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:12 Heat of formation + Delta-G solvation = -39.609002 kcal Electronic energy + Delta-G solvation = -32693.262187 eV Core-core repulsion = 28856.757067 eV Total energy + Delta-G solvation = -3836.505120 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.20422 -40.46573 -38.92359 -35.63390 -34.54619 -34.02805 -33.81577 -33.32476 -31.97225 -30.80678 -27.91409 -27.26253 -26.83210 -25.30733 -24.49795 -23.42715 -22.38265 -22.36032 -21.47514 -20.28200 -19.40228 -18.33446 -18.23319 -17.14155 -16.77546 -16.56226 -16.37892 -16.00980 -15.74079 -15.55888 -15.50690 -14.95440 -14.88934 -14.59966 -14.47878 -14.26093 -14.11802 -13.94560 -13.63750 -13.49431 -13.36464 -12.94693 -12.86986 -12.70764 -12.53547 -12.45884 -12.39829 -12.37597 -12.31769 -12.18234 -11.95668 -11.90019 -11.81914 -11.67020 -11.62094 -11.35373 -11.03433 -10.72712 -10.58734 -10.47201 -9.88942 -9.00115 -8.59835 -7.79404 -5.26004 1.50952 1.53200 1.59712 1.70141 2.29148 2.55418 3.03210 3.36948 3.53018 3.59628 3.61893 3.75324 3.96373 4.01005 4.03443 4.07244 4.10994 4.20998 4.23985 4.30613 4.38726 4.41461 4.50794 4.51265 4.57364 4.65625 4.70687 4.78561 4.83641 4.87708 4.93454 4.97823 4.99389 5.03198 5.04274 5.08971 5.11761 5.12877 5.14603 5.21393 5.23066 5.29522 5.34512 5.44159 5.48089 5.57361 5.67396 5.75860 5.82467 6.15551 6.39096 6.45944 6.70040 7.21330 7.32981 7.91300 8.44680 9.27033 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.012372 B = 0.004679 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.673553 B = 5982.647702 C = 7075.038998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.157 3.843 3 H 0.029 0.971 4 C 0.142 3.858 5 H 0.075 0.925 6 N -0.693 5.693 7 C 0.517 3.483 8 O -0.586 6.586 9 C -0.094 4.094 10 C -0.099 4.099 11 C -0.145 4.145 12 C 0.063 3.937 13 N -0.548 5.548 14 C 0.065 3.935 15 C -0.145 4.145 16 C -0.083 4.083 17 C 0.084 3.916 18 C -0.114 4.114 19 C -0.124 4.124 20 C 0.179 3.821 21 N -0.594 5.594 22 C -0.244 4.244 23 H 0.079 0.921 24 C -0.047 4.047 25 N -0.936 5.936 26 Si 0.957 3.043 27 H -0.287 1.287 28 H -0.305 1.305 29 H -0.267 1.267 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.407 0.593 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.053 0.947 49 H 0.064 0.936 50 H 0.060 0.940 51 H 0.053 0.947 52 H -0.007 1.007 53 H 0.057 0.943 54 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 -11.847 -13.764 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 H 0.047 0.953 4 C 0.036 3.964 5 H 0.093 0.907 6 N -0.343 5.343 7 C 0.304 3.696 8 O -0.466 6.466 9 C -0.099 4.099 10 C -0.137 4.137 11 C -0.183 4.183 12 C -0.065 4.065 13 N -0.268 5.268 14 C -0.063 4.063 15 C -0.184 4.184 16 C -0.122 4.122 17 C -0.045 4.045 18 C -0.153 4.153 19 C -0.164 4.164 20 C 0.053 3.947 21 N -0.318 5.318 22 C -0.374 4.374 23 H 0.097 0.903 24 C -0.243 4.243 25 N -0.582 5.582 26 Si 0.786 3.214 27 H -0.214 1.214 28 H -0.232 1.232 29 H -0.191 1.191 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.243 0.757 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.079 0.921 51 H 0.072 0.928 52 H 0.011 0.989 53 H 0.076 0.924 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.045 -11.747 -14.025 19.267 hybrid contribution -0.506 0.685 0.960 1.284 sum -6.551 -11.062 -13.065 18.329 Atomic orbital electron populations 1.21682 0.94241 1.01665 1.00736 1.20830 0.94494 0.93355 0.86296 0.95339 1.21303 0.92858 0.83844 0.98428 0.90668 1.45960 1.61199 1.17871 1.09274 1.21157 0.77817 0.87830 0.82788 1.90618 1.52108 1.68355 1.35535 1.21205 0.97789 0.91655 0.99220 1.21284 0.92801 0.98719 1.00935 1.21919 0.99331 0.94329 1.02763 1.21876 0.86372 0.99871 0.98404 1.60196 1.22182 1.22009 1.22460 1.21852 1.01451 0.97660 0.85346 1.21966 1.01941 0.93576 1.00883 1.21028 1.01756 0.96635 0.92738 1.21842 0.96826 0.87128 0.98686 1.21701 0.95608 1.00390 0.97556 1.21935 0.99640 0.99039 0.95738 1.20585 0.83302 0.95738 0.95028 1.44309 1.02901 1.65310 1.19269 1.19462 0.95201 1.36285 0.86494 0.90297 1.25734 0.98829 1.00970 0.98743 1.70178 1.25140 1.46313 1.16587 0.85421 0.79195 0.78356 0.78407 1.21405 1.23237 1.19121 0.92502 0.93370 0.91997 0.75652 0.91953 0.92209 0.90300 0.90675 0.91414 0.88918 0.88955 0.91217 0.90459 0.90764 0.92663 0.93106 0.91227 0.90922 0.92855 0.91700 0.92146 0.92822 0.98920 0.92414 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 7.72 71.98 0.56 -3.76 16 2 C 0.16 6.02 3.20 44.97 0.14 6.16 16 3 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 4 C 0.14 4.90 2.33 45.07 0.10 5.01 16 5 H 0.08 2.63 7.58 -2.39 -0.02 2.61 16 6 N -0.69 -22.02 3.14 -441.25 -1.38 -23.40 16 7 C 0.52 16.14 6.40 87.91 0.56 16.70 16 8 O -0.59 -21.93 15.44 -3.04 -0.05 -21.98 16 9 C -0.09 -2.29 0.58 -52.98 -0.03 -2.32 16 10 C -0.10 -2.15 4.62 30.14 0.14 -2.01 16 11 C -0.14 -2.41 5.14 30.08 0.15 -2.25 16 12 C 0.06 1.09 5.77 86.26 0.50 1.59 16 13 N -0.55 -11.05 4.79 -902.25 -4.32 -15.37 16 14 C 0.06 1.06 5.77 86.25 0.50 1.56 16 15 C -0.14 -2.36 5.12 30.06 0.15 -2.21 16 16 C -0.08 -1.91 4.08 30.14 0.12 -1.79 16 17 C 0.08 2.04 4.79 86.43 0.41 2.46 16 18 C -0.11 -3.94 5.58 30.62 0.17 -3.77 16 19 C -0.12 -4.62 5.93 30.67 0.18 -4.44 16 20 C 0.18 8.22 5.29 86.37 0.46 8.68 16 21 N -0.59 -26.81 2.65 -675.24 -1.79 -28.60 16 22 C -0.24 -11.95 8.61 84.03 0.72 -11.22 16 23 H 0.08 3.67 6.20 -2.91 -0.02 3.65 16 24 C -0.05 -2.48 4.96 84.86 0.42 -2.05 16 25 N -0.94 -53.03 11.14 21.65 0.24 -52.79 16 26 Si 0.96 42.50 29.58 68.60 2.03 44.53 16 27 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 28 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 30 H 0.06 1.89 6.38 -2.39 -0.02 1.88 16 31 H 0.05 1.79 7.66 -2.39 -0.02 1.78 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.41 13.32 6.39 -92.71 -0.59 12.72 16 34 H 0.06 1.37 8.20 -2.01 -0.02 1.35 16 35 H 0.06 1.42 7.26 -2.01 -0.01 1.40 16 36 H 0.08 1.15 5.68 -2.55 -0.01 1.13 16 37 H 0.07 1.13 8.27 -1.56 -0.01 1.12 16 38 H 0.07 1.32 8.20 -2.05 -0.02 1.30 16 39 H 0.09 1.27 8.10 -2.07 -0.02 1.25 16 40 H 0.09 1.17 8.10 -2.02 -0.02 1.15 16 41 H 0.07 1.18 8.20 -2.03 -0.02 1.16 16 42 H 0.08 1.12 5.71 -2.53 -0.01 1.10 16 43 H 0.07 1.05 8.27 -1.53 -0.01 1.04 16 44 H 0.05 1.35 8.20 -2.02 -0.02 1.33 16 45 H 0.05 1.34 7.79 -2.01 -0.02 1.33 16 46 H 0.07 1.80 8.13 -2.44 -0.02 1.78 16 47 H 0.07 1.94 7.47 -2.45 -0.02 1.93 16 48 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 49 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 51 H 0.05 1.99 7.53 -2.39 -0.02 1.97 16 52 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 53 H 0.06 3.02 6.06 -2.38 -0.01 3.01 16 54 H 0.25 13.74 8.31 -92.70 -0.77 12.97 16 Total: -1.00 -59.78 386.44 0.32 -59.46 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.32 Total: 31.82 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 5.27 Total: 6.32 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -7.25 Total: -120.16 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.05 Total: -21.98 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -59.78 0.32 -59.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993489590.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.852 kcal (2) G-P(sol) polarization free energy of solvation -59.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds