Wall clock time and date at job start Tue Mar 31 2020 18:34:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53001 * 110.30349 * 2 1
4 4 C 1.54387 * 110.34121 * 237.71491 * 2 1 3
5 5 N 1.48148 * 104.61759 * 264.99390 * 4 2 1
6 6 C 1.34783 * 127.83996 * 140.41082 * 5 4 2
7 7 O 1.21280 * 119.99671 * 354.74294 * 6 5 4
8 8 C 1.50690 * 119.99903 * 174.74003 * 6 5 4
9 9 H 1.08996 * 109.47683 * 28.24059 * 8 6 5
10 10 C 1.52999 * 109.47429 * 268.23956 * 8 6 5
11 11 C 1.53000 * 117.50125 * 133.07410 * 10 8 6
12 12 C 1.53002 * 117.49937 * 64.41204 * 10 8 6
13 13 N 1.46903 * 109.47062 * 148.24183 * 8 6 5
14 14 C 1.48530 * 111.00292 * 177.60493 * 13 8 6
15 15 C 1.54938 * 103.22897 * 159.71795 * 14 13 8
16 16 C 1.54590 * 102.92279 * 322.58858 * 15 14 13
17 17 C 1.47903 * 110.99765 * 295.00117 * 13 8 6
18 18 C 1.48307 * 104.39219 * 320.47429 * 5 4 2
19 19 C 1.54283 * 110.34454 * 122.17945 * 2 1 3
20 20 H 1.08997 * 110.34068 * 359.88780 * 19 2 1
21 21 N 1.46503 * 110.34134 * 237.74340 * 19 2 1
22 22 C 1.36930 * 120.00316 * 156.47453 * 21 19 2
23 23 H 1.08004 * 119.99991 * 359.97438 * 22 21 19
24 24 C 1.38815 * 120.00503 * 180.02562 * 22 21 19
25 25 N 1.31624 * 119.99416 * 359.97438 * 24 22 21
26 26 Si 1.86795 * 120.00494 * 179.97438 * 24 22 21
27 27 H 1.48496 * 109.46997 * 89.99642 * 26 24 22
28 28 H 1.48503 * 109.47072 * 210.00018 * 26 24 22
29 29 H 1.48504 * 109.46886 * 329.99524 * 26 24 22
30 30 H 1.09000 * 109.47112 * 297.82032 * 1 2 3
31 31 H 1.08994 * 109.47209 * 57.82531 * 1 2 3
32 32 H 1.09007 * 109.46872 * 177.82777 * 1 2 3
33 33 H 1.08994 * 109.46768 * 182.17872 * 3 2 1
34 34 H 1.09000 * 109.46832 * 302.17288 * 3 2 1
35 35 H 1.08998 * 109.47229 * 62.17806 * 3 2 1
36 36 H 1.09004 * 110.41084 * 23.77661 * 4 2 1
37 37 H 1.09003 * 110.41028 * 146.21046 * 4 2 1
38 38 H 1.09002 * 115.54992 * 278.74357 * 10 8 6
39 39 H 1.08997 * 117.49579 * 359.97438 * 11 10 8
40 40 H 1.08997 * 117.50358 * 145.02249 * 11 10 8
41 41 H 1.08999 * 117.49972 * 214.98254 * 12 10 8
42 42 H 1.08999 * 117.49441 * 0.02562 * 12 10 8
43 43 H 1.09005 * 110.66749 * 278.15703 * 14 13 8
44 44 H 1.08999 * 110.66845 * 41.28223 * 14 13 8
45 45 H 1.08995 * 110.72574 * 204.22535 * 15 14 13
46 46 H 1.09006 * 110.72318 * 80.94391 * 15 14 13
47 47 H 1.09006 * 110.30688 * 263.03951 * 16 15 14
48 48 H 1.08998 * 110.31117 * 140.87220 * 16 15 14
49 49 H 1.08999 * 109.91543 * 333.50591 * 17 13 8
50 50 H 1.08996 * 109.91995 * 94.80366 * 17 13 8
51 51 H 1.09004 * 110.38681 * 280.73323 * 18 5 4
52 52 H 1.09004 * 110.50911 * 158.24981 * 18 5 4
53 53 H 0.97003 * 119.99650 * 336.47275 * 21 19 2
54 54 H 0.97001 * 119.99826 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0609 1.4350 0.0000
4 6 2.0667 -0.7732 -1.2238
5 7 2.3140 -2.1445 -0.7206
6 6 2.0773 -3.3119 -1.3514
7 8 1.5185 -3.3171 -2.4278
8 6 2.5071 -4.6105 -0.7192
9 1 2.5129 -4.5023 0.3654
10 6 3.9126 -4.9727 -1.2030
11 6 4.9320 -5.4095 -0.1489
12 6 5.0575 -4.0358 -0.8126
13 7 1.5688 -5.6747 -1.1001
14 6 1.9931 -6.9837 -0.5412
15 6 0.6906 -7.8222 -0.5739
16 6 -0.3968 -6.7862 -0.2077
17 6 0.2219 -5.4171 -0.5458
18 6 2.8796 -1.9432 0.6355
19 6 2.0664 -0.7704 1.2244
20 1 1.2399 -1.1471 1.8268
21 7 2.9309 0.0942 2.0314
22 6 3.1249 -0.1789 3.3591
23 1 2.6403 -1.0315 3.8115
24 6 3.9436 0.6407 4.1240
25 7 4.5337 1.6801 3.5728
26 14 4.2077 0.2686 5.9354
27 1 5.3807 -0.6287 6.0904
28 1 4.4529 1.5354 6.6704
29 1 2.9993 -0.3968 6.4853
30 1 -0.3633 0.4796 0.9089
31 1 -0.3633 0.5472 -0.8698
32 1 -0.3633 -1.0270 -0.0390
33 1 3.1501 1.4193 -0.0391
34 1 1.6738 1.9655 -0.8699
35 1 1.7372 1.9421 0.9088
36 1 1.3223 -0.7890 -2.0199
37 1 2.9949 -0.3256 -1.5791
38 1 3.9645 -5.4503 -2.1815
39 1 4.6013 -5.4384 0.8893
40 1 5.6547 -6.1740 -0.4340
41 1 5.8627 -3.8972 -1.5341
42 1 4.8094 -3.1616 -0.2107
43 1 2.7598 -7.4393 -1.1679
44 1 2.3502 -6.8676 0.4821
45 1 0.7274 -8.6210 0.1667
46 1 0.5174 -8.2270 -1.5711
47 1 -0.6310 -6.8433 0.8554
48 1 -1.2943 -6.9532 -0.8031
49 1 0.3016 -4.8123 0.3575
50 1 -0.3925 -4.9047 -1.2860
51 1 3.9353 -1.6792 0.5712
52 1 2.7473 -2.8396 1.2414
53 1 3.3658 0.8602 1.6252
54 1 5.1061 2.2526 4.1072
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000996097063.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:34:43
Heat of formation + Delta-G solvation = 5.528003 kcal
Electronic energy + Delta-G solvation = -31540.807107 eV
Core-core repulsion = 27706.259274 eV
Total energy + Delta-G solvation = -3834.547833 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-41.72277 -40.25398 -38.79237 -37.86284 -35.83595 -34.58538 -32.97995 -32.65299
-29.85973 -29.27551 -28.65809 -28.24976 -26.53968 -25.71958 -23.45047 -23.33318
-22.64662 -22.14493 -21.34335 -20.18769 -19.64746 -19.18645 -18.36403 -17.49293
-16.97084 -16.80849 -16.77937 -16.25092 -15.74216 -15.53825 -15.35539 -15.21945
-14.97392 -14.70489 -14.52938 -14.23358 -14.01659 -13.54992 -13.51238 -13.29549
-13.21248 -13.14184 -13.01705 -12.84591 -12.70903 -12.58065 -12.37924 -12.25043
-12.21198 -12.10874 -12.09397 -12.04966 -11.88599 -11.58520 -11.47173 -11.43692
-11.34161 -11.28962 -10.94419 -10.56794 -9.75954 -9.45844 -8.99045 -7.92333
-5.20592 1.49780 1.50574 1.53704 1.58306 1.81301 2.57583 2.67410
2.95142 3.37530 3.40235 3.58490 3.67378 3.71446 3.79800 3.87125
3.89996 3.92354 3.95019 4.06180 4.09364 4.17677 4.28666 4.32971
4.38503 4.45406 4.53700 4.60013 4.61358 4.68735 4.71605 4.75121
4.80906 4.84858 4.90300 4.93666 4.96222 4.97185 4.99132 5.04481
5.07412 5.12265 5.15021 5.17985 5.20303 5.28868 5.31335 5.41420
5.49632 5.58306 5.83489 5.90630 6.29439 6.54431 7.14426 7.38117
8.10497 8.36120 9.30522
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.011134 B = 0.003785 C = 0.003424
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2514.171185 B = 7395.182297 C = 8176.765030
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.080 4.080
3 C -0.121 4.121
4 C 0.119 3.881
5 N -0.614 5.614
6 C 0.541 3.459
7 O -0.565 6.565
8 C 0.104 3.896
9 H 0.060 0.940
10 C -0.147 4.147
11 C -0.149 4.149
12 C -0.189 4.189
13 N -0.509 5.509
14 C 0.038 3.962
15 C -0.117 4.117
16 C -0.125 4.125
17 C 0.032 3.968
18 C 0.092 3.908
19 C 0.171 3.829
20 H 0.054 0.946
21 N -0.723 5.723
22 C -0.241 4.241
23 H 0.074 0.926
24 C -0.065 4.065
25 N -0.964 5.964
26 Si 0.964 3.036
27 H -0.288 1.288
28 H -0.299 1.299
29 H -0.272 1.272
30 H 0.054 0.946
31 H 0.070 0.930
32 H 0.046 0.954
33 H 0.047 0.953
34 H 0.072 0.928
35 H 0.049 0.951
36 H 0.079 0.921
37 H 0.072 0.928
38 H 0.114 0.886
39 H 0.096 0.904
40 H 0.119 0.881
41 H 0.105 0.895
42 H 0.086 0.914
43 H 0.091 0.909
44 H 0.050 0.950
45 H 0.093 0.907
46 H 0.075 0.925
47 H 0.077 0.923
48 H 0.079 0.921
49 H 0.033 0.967
50 H 0.060 0.940
51 H 0.067 0.933
52 H 0.071 0.929
53 H 0.384 0.616
54 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.243 -16.006 -8.525 18.877
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.082 4.082
3 C -0.179 4.179
4 C -0.003 4.003
5 N -0.348 5.348
6 C 0.330 3.670
7 O -0.444 6.444
8 C -0.008 4.008
9 H 0.077 0.923
10 C -0.165 4.165
11 C -0.186 4.186
12 C -0.227 4.227
13 N -0.234 5.234
14 C -0.089 4.089
15 C -0.155 4.155
16 C -0.163 4.163
17 C -0.096 4.096
18 C -0.033 4.033
19 C 0.060 3.940
20 H 0.072 0.928
21 N -0.366 5.366
22 C -0.373 4.373
23 H 0.092 0.908
24 C -0.258 4.258
25 N -0.614 5.614
26 Si 0.793 3.207
27 H -0.215 1.215
28 H -0.226 1.226
29 H -0.197 1.197
30 H 0.073 0.927
31 H 0.089 0.911
32 H 0.066 0.934
33 H 0.066 0.934
34 H 0.091 0.909
35 H 0.068 0.932
36 H 0.098 0.902
37 H 0.090 0.910
38 H 0.132 0.868
39 H 0.114 0.886
40 H 0.138 0.862
41 H 0.123 0.877
42 H 0.104 0.896
43 H 0.110 0.890
44 H 0.068 0.932
45 H 0.112 0.888
46 H 0.094 0.906
47 H 0.096 0.904
48 H 0.097 0.903
49 H 0.051 0.949
50 H 0.079 0.921
51 H 0.086 0.914
52 H 0.089 0.911
53 H 0.221 0.779
54 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges -5.596 -16.173 -9.537 19.592
hybrid contribution 0.606 0.809 1.835 2.095
sum -4.990 -15.364 -7.702 17.896
Atomic orbital electron populations
1.21724 0.92778 1.01290 1.02288 1.21673 0.96756 0.95761 0.93966
1.21568 1.00224 0.94313 1.01810 1.22414 1.00738 0.80792 0.96379
1.49048 1.62421 1.05438 1.17888 1.20335 0.77740 0.84234 0.84656
1.90636 1.43554 1.87093 1.23090 1.21225 0.93154 0.89230 0.97171
0.92277 1.21936 0.87492 1.06090 1.01028 1.23129 1.00678 0.97635
0.97162 1.23167 1.00254 0.94889 1.04366 1.64572 1.01103 1.01780
1.55904 1.23311 0.98753 0.88318 0.98477 1.22490 0.92785 0.97298
1.02908 1.22381 0.99172 0.92614 1.02112 1.22872 0.90628 0.98783
0.97275 1.23373 0.98353 1.00092 0.81516 1.21242 0.91899 0.89865
0.90969 0.92798 1.42818 1.55375 1.31577 1.06798 1.19577 1.22297
1.08403 0.86991 0.90780 1.25400 1.00746 0.97918 1.01689 1.69791
1.36393 1.18649 1.36590 0.85291 0.77968 0.76382 0.81010 1.21527
1.22620 1.19675 0.92651 0.91057 0.93441 0.93448 0.90868 0.93188
0.90240 0.90981 0.86839 0.88591 0.86227 0.87653 0.89570 0.89040
0.93207 0.88842 0.90577 0.90383 0.90263 0.94902 0.92111 0.91448
0.91089 0.77912 0.94067
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.43 8.24 71.98 0.59 -2.83 16
2 C -0.08 -2.49 1.03 -51.27 -0.05 -2.54 16
3 C -0.12 -3.88 7.11 71.98 0.51 -3.36 16
4 C 0.12 3.63 6.17 86.53 0.53 4.16 16
5 N -0.61 -19.36 3.32 -807.52 -2.68 -22.04 16
6 C 0.54 17.72 6.11 87.65 0.54 18.26 16
7 O -0.57 -22.09 16.84 -3.03 -0.05 -22.14 16
8 C 0.10 2.80 1.48 44.17 0.07 2.87 16
9 H 0.06 1.60 6.01 -2.39 -0.01 1.59 16
10 C -0.15 -3.44 4.25 -10.79 -0.05 -3.49 16
11 C -0.15 -2.83 10.14 30.62 0.31 -2.52 16
12 C -0.19 -4.47 9.99 30.62 0.31 -4.16 16
13 N -0.51 -12.86 4.82 -862.25 -4.15 -17.01 16
14 C 0.04 0.71 5.69 86.65 0.49 1.20 16
15 C -0.12 -1.76 7.06 31.80 0.22 -1.53 16
16 C -0.12 -2.17 6.93 31.47 0.22 -1.95 16
17 C 0.03 0.79 5.91 86.45 0.51 1.30 16
18 C 0.09 3.05 5.36 86.50 0.46 3.52 16
19 C 0.17 6.27 3.33 45.90 0.15 6.42 16
20 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16
21 N -0.72 -33.07 4.60 -318.66 -1.47 -34.53 16
22 C -0.24 -12.34 9.96 84.04 0.84 -11.50 16
23 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16
24 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16
25 N -0.96 -55.68 13.06 21.65 0.28 -55.40 16
26 Si 0.96 43.86 29.55 68.60 2.03 45.88 16
27 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16
28 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16
29 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16
31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16
32 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16
33 H 0.05 1.64 6.94 -2.39 -0.02 1.63 16
34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16
35 H 0.05 1.83 7.75 -2.39 -0.02 1.81 16
36 H 0.08 2.41 7.57 -2.38 -0.02 2.39 16
37 H 0.07 2.15 7.84 -2.39 -0.02 2.13 16
38 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16
39 H 0.10 1.82 8.08 -2.39 -0.02 1.80 16
40 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16
41 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16
42 H 0.09 2.38 5.32 -2.39 -0.01 2.36 16
43 H 0.09 1.55 7.95 -2.38 -0.02 1.53 16
44 H 0.05 0.88 8.02 -2.39 -0.02 0.86 16
45 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16
46 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16
47 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16
48 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
49 H 0.03 0.85 7.65 -2.39 -0.02 0.83 16
50 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16
51 H 0.07 2.42 6.78 -2.38 -0.02 2.40 16
52 H 0.07 2.24 6.52 -2.38 -0.02 2.23 16
53 H 0.38 18.71 5.05 -92.71 -0.47 18.24 16
54 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16
Total: -1.00 -63.08 410.78 0.48 -62.60
By element:
Atomic # 1 Polarization: 41.42 SS G_CDS: 0.40 Total: 41.82 kcal
Atomic # 6 Polarization: -5.31 SS G_CDS: 6.12 Total: 0.82 kcal
Atomic # 7 Polarization: -120.96 SS G_CDS: -8.02 Total: -128.98 kcal
Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.14 kcal
Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal
Total: -63.08 0.48 -62.60 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000996097063.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.125 kcal
(2) G-P(sol) polarization free energy of solvation -63.081 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.043 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.597 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.528 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds