Wall clock time and date at job start Tue Mar 31 2020 19:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 115.56638 * 2 1 4 4 C 1.52996 * 117.50088 * 214.30701 * 2 1 3 5 5 C 1.52993 * 60.00469 * 252.51123 * 4 2 1 6 6 H 1.08998 * 117.52370 * 107.47599 * 5 4 2 7 7 C 1.50696 * 117.50068 * 252.51005 * 5 4 2 8 8 O 1.21279 * 119.99982 * 68.61956 * 7 5 4 9 9 N 1.34776 * 119.99913 * 248.61860 * 7 5 4 10 10 C 1.46510 * 119.99703 * 179.97438 * 9 7 5 11 11 C 1.53001 * 109.46916 * 204.99906 * 10 9 7 12 12 C 1.52997 * 109.47399 * 300.00117 * 11 10 9 13 13 C 1.52998 * 109.47144 * 300.00310 * 12 11 10 14 14 N 1.46908 * 109.47148 * 179.97438 * 13 12 11 15 15 C 1.46894 * 110.99946 * 174.99813 * 14 13 12 16 16 C 1.53239 * 109.34109 * 172.74558 * 15 14 13 17 17 N 1.47085 * 108.68015 * 53.73230 * 16 15 14 18 18 C 1.36938 * 120.88023 * 128.91413 * 17 16 15 19 19 H 1.07992 * 120.00122 * 333.01560 * 18 17 16 20 20 C 1.38817 * 119.99537 * 153.01118 * 18 17 16 21 21 N 1.31613 * 120.00436 * 343.78439 * 20 18 17 22 22 Si 1.86798 * 119.99529 * 163.78130 * 20 18 17 23 23 H 1.48500 * 109.47412 * 60.00164 * 22 20 18 24 24 H 1.48500 * 109.47271 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47388 * 300.00167 * 22 20 18 26 26 C 1.47145 * 118.19232 * 309.15405 * 17 16 15 27 27 C 1.46899 * 110.99614 * 50.69586 * 14 13 12 28 28 C 1.53001 * 109.47225 * 59.99584 * 13 12 11 29 29 C 1.52997 * 109.47399 * 300.00260 * 28 13 12 30 30 H 1.08998 * 109.47115 * 274.31100 * 1 2 3 31 31 H 1.09004 * 109.47270 * 34.31226 * 1 2 3 32 32 H 1.09002 * 109.47234 * 154.31325 * 1 2 3 33 33 H 1.08995 * 117.50205 * 145.02229 * 4 2 1 34 34 H 1.09003 * 117.50015 * 0.02562 * 4 2 1 35 35 H 0.96992 * 120.00118 * 359.97438 * 9 7 5 36 36 H 1.08999 * 109.47236 * 325.00042 * 10 9 7 37 37 H 1.09004 * 109.46754 * 179.97438 * 11 10 9 38 38 H 1.09003 * 109.46674 * 60.00262 * 11 10 9 39 39 H 1.08994 * 109.47404 * 179.97438 * 12 11 10 40 40 H 1.09004 * 109.46942 * 59.99784 * 12 11 10 41 41 H 1.08996 * 109.47120 * 299.99535 * 13 12 11 42 42 H 1.08996 * 109.49581 * 52.78567 * 15 14 13 43 43 H 1.09003 * 109.51888 * 292.71972 * 15 14 13 44 44 H 1.08999 * 109.62794 * 173.53507 * 16 15 14 45 45 H 1.08994 * 109.62620 * 293.92753 * 16 15 14 46 46 H 0.96999 * 120.00074 * 179.97438 * 21 20 18 47 47 H 1.08996 * 109.46349 * 291.14032 * 26 17 16 48 48 H 1.08997 * 109.80486 * 170.75053 * 26 17 16 49 49 H 1.09001 * 109.49373 * 307.21108 * 27 14 13 50 50 H 1.08998 * 109.49522 * 67.27305 * 27 14 13 51 51 H 1.09004 * 109.46754 * 60.00471 * 28 13 12 52 52 H 1.09006 * 109.46881 * 179.97438 * 28 13 12 53 53 H 1.08996 * 109.46733 * 299.99918 * 29 28 13 54 54 H 1.08999 * 109.46963 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1210 -0.7649 5 6 2.2365 -1.1210 0.7650 6 1 1.6112 -1.8582 1.2687 7 6 3.5292 -0.7811 1.4609 8 8 3.9717 0.3465 1.4013 9 7 4.1936 -1.7302 2.1495 10 6 5.4508 -1.3999 2.8255 11 6 6.2947 -2.6667 2.9803 12 6 5.5239 -3.6948 3.8107 13 6 5.2219 -3.1112 5.1924 14 7 4.4812 -4.0982 5.9896 15 6 4.2765 -3.6189 7.3629 16 6 3.3504 -4.5877 8.1059 17 7 3.9049 -5.9458 7.9976 18 6 4.0818 -6.7235 9.1107 19 1 4.2418 -6.2605 10.0731 20 6 4.0555 -8.1072 9.0019 21 7 3.5537 -8.6732 7.9249 22 14 4.7325 -9.1656 10.3841 23 1 3.9790 -8.8897 11.6336 24 1 4.5890 -10.5995 10.0254 25 1 6.1685 -8.8493 10.5921 26 6 4.2690 -6.4435 6.6616 27 6 5.1589 -5.4015 5.9755 28 6 4.3779 -1.8445 5.0376 29 6 5.1487 -0.8164 4.2072 30 1 -0.3633 0.0772 1.0247 31 1 -0.3634 0.8488 -0.5793 32 1 -0.3634 -0.9261 -0.4454 33 1 3.1715 -0.8752 -1.2681 34 1 1.6112 -1.8583 -1.2685 35 1 3.8395 -2.6320 2.1975 36 1 5.9999 -0.6674 2.2339 37 1 7.2302 -2.4208 3.4828 38 1 6.5099 -3.0823 1.9958 39 1 6.1250 -4.5974 3.9206 40 1 4.5886 -3.9405 3.3077 41 1 6.1571 -2.8655 5.6954 42 1 3.8224 -2.6283 7.3385 43 1 5.2361 -3.5664 7.8772 44 1 3.2867 -4.3010 9.1555 45 1 2.3572 -4.5609 7.6579 46 1 3.5356 -9.6401 7.8487 47 1 3.3649 -6.5976 6.0726 48 1 4.8111 -7.3846 6.7532 49 1 5.3446 -5.7038 4.9448 50 1 6.1065 -5.3246 6.5084 51 1 3.4426 -2.0903 4.5347 52 1 4.1623 -1.4290 6.0221 53 1 6.0839 -0.5706 4.7102 54 1 4.5476 0.0862 4.0974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996787733.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:32 Heat of formation + Delta-G solvation = -10.859022 kcal Electronic energy + Delta-G solvation = -30215.517839 eV Core-core repulsion = 26380.259411 eV Total energy + Delta-G solvation = -3835.258428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.48370 -40.32467 -38.74797 -37.50328 -36.08912 -34.16295 -32.92968 -32.33438 -31.15717 -30.27387 -29.38330 -27.60297 -25.32163 -24.84123 -24.66977 -22.77977 -22.41704 -21.94443 -21.04656 -20.79214 -20.06512 -18.73436 -18.52510 -17.32430 -16.86885 -16.65557 -16.26736 -15.90403 -15.70569 -15.44268 -15.30480 -15.20881 -15.10401 -14.79074 -14.51173 -14.36852 -14.14838 -13.91675 -13.67678 -13.54133 -13.29855 -13.19682 -12.96648 -12.89382 -12.78448 -12.53526 -12.38179 -12.30427 -12.12024 -12.04668 -11.96013 -11.83928 -11.71745 -11.34498 -11.31185 -11.21706 -11.03136 -10.90139 -10.74279 -10.57976 -9.99452 -9.21157 -8.66078 -7.87533 -5.32558 1.46126 1.48107 1.52332 1.55129 2.20858 2.50361 2.87906 2.95246 3.27626 3.65022 3.68713 3.73859 3.81236 3.81906 3.90798 4.01643 4.15075 4.21616 4.25840 4.32470 4.35720 4.43449 4.45425 4.52831 4.54816 4.60045 4.66906 4.67766 4.72618 4.76366 4.87456 4.88068 4.91144 4.94896 4.97430 5.06508 5.09701 5.14142 5.19375 5.21563 5.23032 5.24769 5.34221 5.41266 5.41929 5.43432 5.60613 5.60856 5.70959 6.23607 6.36435 6.38424 6.59213 7.13940 7.28219 7.84387 8.38794 9.18984 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.018681 B = 0.002362 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.474626 B =11853.389822 C =12363.173282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.130 4.130 3 H 0.095 0.905 4 C -0.135 4.135 5 C -0.200 4.200 6 H 0.139 0.861 7 C 0.540 3.460 8 O -0.586 6.586 9 N -0.707 5.707 10 C 0.149 3.851 11 C -0.113 4.113 12 C -0.113 4.113 13 C 0.087 3.913 14 N -0.533 5.533 15 C 0.055 3.945 16 C 0.146 3.854 17 N -0.615 5.615 18 C -0.266 4.266 19 H 0.064 0.936 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.276 1.276 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.186 3.814 27 C 0.049 3.951 28 C -0.099 4.099 29 C -0.121 4.121 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.410 0.590 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.032 0.968 42 H 0.091 0.909 43 H 0.018 0.982 44 H 0.055 0.945 45 H 0.015 0.985 46 H 0.251 0.749 47 H -0.001 1.001 48 H 0.054 0.946 49 H 0.091 0.909 50 H 0.013 0.987 51 H 0.064 0.936 52 H 0.058 0.942 53 H 0.079 0.921 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.834 15.473 -17.181 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 H 0.113 0.887 4 C -0.172 4.172 5 C -0.221 4.221 6 H 0.157 0.843 7 C 0.328 3.672 8 O -0.467 6.467 9 N -0.359 5.359 10 C 0.044 3.956 11 C -0.151 4.151 12 C -0.151 4.151 13 C -0.021 4.021 14 N -0.257 5.257 15 C -0.074 4.074 16 C 0.020 3.980 17 N -0.339 5.339 18 C -0.396 4.396 19 H 0.082 0.918 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.796 3.204 23 H -0.202 1.202 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.060 3.940 27 C -0.080 4.080 28 C -0.136 4.136 29 C -0.160 4.160 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.145 0.855 35 H 0.248 0.752 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.109 0.891 43 H 0.036 0.964 44 H 0.074 0.926 45 H 0.033 0.967 46 H 0.060 0.940 47 H 0.017 0.983 48 H 0.073 0.927 49 H 0.109 0.891 50 H 0.031 0.969 51 H 0.082 0.918 52 H 0.077 0.923 53 H 0.098 0.902 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.679 16.015 -17.426 23.677 hybrid contribution 0.826 -1.142 1.513 2.068 sum 1.504 14.873 -15.913 21.833 Atomic orbital electron populations 1.21402 0.90742 1.03240 1.02393 1.22378 0.96340 0.94183 1.01944 0.88708 1.23170 1.02928 1.01297 0.89822 1.22390 0.96992 1.06124 0.96630 0.84278 1.20085 0.85163 0.84226 0.77715 1.90655 1.69708 1.22688 1.63672 1.46048 1.24330 1.13715 1.51762 1.20922 0.84653 0.97450 0.92547 1.21753 0.98468 0.93678 1.01216 1.21659 1.00981 0.98455 0.94015 1.21686 0.94437 0.91921 0.94094 1.61957 1.49130 1.02578 1.12073 1.22455 0.98058 0.98454 0.88460 1.21090 0.94377 0.84895 0.97653 1.44391 1.72802 1.13032 1.03655 1.19470 1.42617 0.88493 0.89005 0.91816 1.25788 1.00496 0.98302 0.99964 1.70167 1.47983 1.09378 1.30467 0.85336 0.78526 0.77406 0.79130 1.20188 1.21802 1.20544 1.20631 0.94763 0.94594 0.83972 1.22654 0.94764 0.90298 1.00267 1.21440 0.98713 0.93709 0.99783 1.21831 1.01081 0.97701 0.95377 0.92202 0.91053 0.90980 0.89007 0.85494 0.75214 0.90409 0.89544 0.89656 0.91262 0.90982 0.94992 0.89137 0.96410 0.92636 0.96685 0.94018 0.98317 0.92717 0.89084 0.96919 0.91755 0.92350 0.90244 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 10.19 71.98 0.73 -0.66 16 2 C -0.13 -2.04 5.92 -10.79 -0.06 -2.10 16 3 H 0.09 1.90 7.67 -2.39 -0.02 1.88 16 4 C -0.13 -1.75 9.88 30.59 0.30 -1.45 16 5 C -0.20 -3.23 5.91 -11.54 -0.07 -3.30 16 6 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 7 C 0.54 11.66 7.58 87.66 0.66 12.32 16 8 O -0.59 -17.15 15.92 -3.03 -0.05 -17.20 16 9 N -0.71 -12.61 4.23 -442.52 -1.87 -14.49 16 10 C 0.15 2.69 2.78 44.99 0.13 2.82 16 11 C -0.11 -1.73 5.61 30.59 0.17 -1.55 16 12 C -0.11 -2.23 4.49 30.59 0.14 -2.09 16 13 C 0.09 2.11 1.96 44.91 0.09 2.20 16 14 N -0.53 -17.30 4.50 -870.01 -3.91 -21.21 16 15 C 0.06 1.89 5.46 86.38 0.47 2.37 16 16 C 0.15 6.22 6.69 86.35 0.58 6.79 16 17 N -0.61 -31.63 3.05 -697.96 -2.13 -33.76 16 18 C -0.27 -14.87 9.63 84.03 0.81 -14.06 16 19 H 0.06 3.48 7.88 -2.91 -0.02 3.46 16 20 C -0.05 -2.82 4.96 84.86 0.42 -2.40 16 21 N -0.93 -55.36 11.15 21.65 0.24 -55.12 16 22 Si 0.97 45.01 29.58 68.60 2.03 47.04 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 C 0.19 9.07 5.40 86.34 0.47 9.54 16 27 C 0.05 1.83 5.20 86.38 0.45 2.28 16 28 C -0.10 -2.18 4.96 30.59 0.15 -2.03 16 29 C -0.12 -2.39 5.60 30.59 0.17 -2.22 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.07 0.64 7.90 -2.39 -0.02 0.63 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.13 1.07 8.05 -2.39 -0.02 1.05 16 35 H 0.41 6.17 6.87 -92.71 -0.64 5.53 16 36 H 0.08 1.59 7.58 -2.39 -0.02 1.57 16 37 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.45 6.16 -2.39 -0.01 1.43 16 40 H 0.07 1.39 6.51 -2.38 -0.02 1.37 16 41 H 0.03 0.82 8.13 -2.39 -0.02 0.80 16 42 H 0.09 2.64 6.13 -2.39 -0.01 2.62 16 43 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.06 2.29 7.95 -2.39 -0.02 2.28 16 45 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 47 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 48 H 0.05 2.99 6.16 -2.39 -0.01 2.97 16 49 H 0.09 2.91 5.75 -2.39 -0.01 2.89 16 50 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 51 H 0.06 1.51 7.60 -2.38 -0.02 1.49 16 52 H 0.06 1.35 6.38 -2.38 -0.02 1.34 16 53 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 54 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -68.94 404.68 0.16 -68.78 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.24 Total: 19.50 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 5.61 Total: 6.46 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -7.67 Total: -124.58 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.05 Total: -17.20 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -68.94 0.16 -68.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996787733.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.922 kcal (2) G-P(sol) polarization free energy of solvation -68.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds