Wall clock time and date at job start Tue Mar 31 2020 18:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47229 * 2 1 4 4 C 1.52999 * 109.46914 * 119.99984 * 2 1 3 5 5 N 1.46900 * 109.46858 * 175.27996 * 4 2 1 6 6 C 1.48532 * 111.00317 * 301.57466 * 5 4 2 7 7 C 1.55106 * 103.28566 * 200.33198 * 6 5 4 8 8 C 1.54596 * 102.84183 * 37.30848 * 7 6 5 9 9 H 1.08993 * 110.31247 * 97.11715 * 8 7 6 10 10 C 1.50704 * 110.30469 * 219.18501 * 8 7 6 11 11 O 1.21278 * 119.99898 * 117.21230 * 10 8 7 12 12 N 1.34775 * 119.99791 * 297.20841 * 10 8 7 13 13 C 1.46502 * 119.99781 * 180.02562 * 12 10 8 14 14 C 1.50701 * 109.47276 * 179.97438 * 13 12 10 15 15 C 1.29452 * 117.69509 * 94.97932 * 14 13 12 16 16 C 1.49924 * 123.63205 * 180.62456 * 15 14 13 17 17 N 1.47004 * 109.38529 * 349.42584 * 16 15 14 18 18 C 1.36935 * 121.37092 * 222.82854 * 17 16 15 19 19 H 1.08009 * 119.99339 * 156.60565 * 18 17 16 20 20 C 1.38805 * 120.00432 * 336.60724 * 18 17 16 21 21 N 1.31619 * 120.00289 * 341.82221 * 20 18 17 22 22 Si 1.86807 * 120.00147 * 161.82317 * 20 18 17 23 23 H 1.48500 * 109.47119 * 265.46309 * 22 20 18 24 24 H 1.48501 * 109.46806 * 25.46040 * 22 20 18 25 25 H 1.48500 * 109.47061 * 145.46108 * 22 20 18 26 26 C 1.47339 * 117.24914 * 42.56444 * 17 16 15 27 27 C 1.49978 * 117.69307 * 275.00264 * 14 13 12 28 28 C 1.47904 * 110.99987 * 184.17893 * 5 4 2 29 29 H 1.09000 * 109.47010 * 54.52007 * 1 2 3 30 30 H 1.09001 * 109.47058 * 174.51401 * 1 2 3 31 31 H 1.09000 * 109.47090 * 294.52003 * 1 2 3 32 32 H 1.09004 * 109.47162 * 239.99678 * 2 1 3 33 33 H 1.09005 * 109.46762 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46803 * 299.99618 * 3 2 1 35 35 H 1.08999 * 109.46677 * 60.00070 * 3 2 1 36 36 H 1.08996 * 109.47235 * 55.28737 * 4 2 1 37 37 H 1.09004 * 109.47111 * 295.27892 * 4 2 1 38 38 H 1.08997 * 110.66594 * 318.71502 * 6 5 4 39 39 H 1.09002 * 110.66821 * 81.84381 * 6 5 4 40 40 H 1.08992 * 110.70991 * 278.99980 * 7 6 5 41 41 H 1.08999 * 110.81143 * 155.66093 * 7 6 5 42 42 H 0.96999 * 120.00234 * 359.97438 * 12 10 8 43 43 H 1.09007 * 109.47061 * 60.00472 * 13 12 10 44 44 H 1.08994 * 109.47130 * 300.00380 * 13 12 10 45 45 H 1.07997 * 118.17158 * 0.88228 * 15 14 13 46 46 H 1.09006 * 109.50300 * 229.39636 * 16 15 14 47 47 H 1.09000 * 109.31801 * 109.34351 * 16 15 14 48 48 H 0.96999 * 120.00189 * 180.02562 * 21 20 18 49 49 H 1.08998 * 109.77717 * 58.08518 * 26 17 16 50 50 H 1.09001 * 109.77651 * 178.88960 * 26 17 16 51 51 H 1.08991 * 109.31612 * 40.71670 * 27 14 13 52 52 H 1.09001 * 109.15908 * 281.18733 * 27 14 13 53 53 H 1.09003 * 109.91695 * 26.49267 * 28 5 4 54 54 H 1.09000 * 109.91716 * 265.19830 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5045 -0.8207 1.1936 6 6 3.9428 -1.5469 -0.0257 7 6 5.3785 -2.0117 0.3331 8 6 5.2580 -2.3745 1.8310 9 1 5.1054 -3.4472 1.9494 10 6 6.4929 -1.9374 2.5760 11 8 6.4088 -1.1040 3.4531 12 7 7.6907 -2.4726 2.2675 13 6 8.8912 -2.0480 2.9920 14 6 10.0887 -2.7921 2.4597 15 6 10.7971 -2.2147 1.5429 16 6 12.0054 -2.8382 0.9113 17 7 12.3810 -4.0446 1.6627 18 6 13.6891 -4.3223 1.9576 19 1 13.9299 -4.9624 2.7936 20 6 14.7054 -3.7813 1.1824 21 7 14.4386 -3.3112 -0.0177 22 14 16.4520 -3.7202 1.8422 23 1 16.6973 -2.3979 2.4719 24 1 16.6367 -4.7919 2.8535 25 1 17.4102 -3.9224 0.7259 26 6 11.2914 -4.9395 2.0904 27 6 10.3755 -4.1496 3.0291 28 6 4.0266 -1.6004 2.3369 29 1 -0.3633 0.5965 -0.8369 30 1 -0.3633 -1.0230 -0.0982 31 1 -0.3633 0.4265 0.9350 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6093 -1.7216 1.2925 37 1 1.7473 -0.1609 2.1372 38 1 3.2980 -2.4051 -0.2149 39 1 3.9583 -0.8788 -0.8867 40 1 6.0932 -1.2016 0.1887 41 1 5.6606 -2.8857 -0.2540 42 1 7.7579 -3.1394 1.5662 43 1 8.7710 -2.2657 4.0534 44 1 9.0383 -0.9768 2.8552 45 1 10.5036 -1.2274 1.2180 46 1 12.8318 -2.1275 0.9267 47 1 11.7749 -3.1080 -0.1193 48 1 15.1489 -2.9334 -0.5596 49 1 10.7270 -5.2753 1.2206 50 1 11.7056 -5.7995 2.6167 51 1 9.4387 -4.6914 3.1588 52 1 10.8632 -4.0358 3.9973 53 1 3.2671 -2.2992 2.6876 54 1 4.3168 -0.9275 3.1437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000767280.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:54 Heat of formation + Delta-G solvation = -25.886488 kcal Electronic energy + Delta-G solvation = -29083.479039 eV Core-core repulsion = 25247.568972 eV Total energy + Delta-G solvation = -3835.910067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.34167 -39.78117 -39.13228 -36.53963 -36.31868 -34.55627 -32.86759 -32.09858 -31.42552 -30.05658 -28.59292 -27.93205 -26.62343 -25.66627 -24.39981 -23.32887 -22.75285 -22.45141 -20.91309 -20.47403 -19.49501 -18.63793 -17.51535 -17.27996 -17.03880 -16.78956 -16.36331 -16.19433 -15.76370 -15.59345 -15.29906 -15.24844 -15.03715 -14.56681 -14.54866 -14.38067 -13.98742 -13.89510 -13.55843 -13.32688 -13.23291 -13.12083 -12.95473 -12.87638 -12.81440 -12.69495 -12.61615 -12.43655 -12.23594 -12.21180 -12.09882 -11.80797 -11.78451 -11.70053 -11.58018 -11.37946 -11.27197 -10.88315 -10.67694 -10.09109 -9.64983 -9.30038 -8.76652 -7.89451 -5.28542 1.17978 1.46494 1.48874 1.57061 1.64329 2.41127 2.51025 3.04341 3.27311 3.44786 3.61916 3.63443 3.83394 3.90788 3.96526 3.97469 4.07397 4.27438 4.31572 4.34301 4.43218 4.45350 4.53560 4.59343 4.66255 4.71498 4.73296 4.75502 4.81924 4.84091 4.85614 4.91411 4.93701 4.97582 5.06635 5.09843 5.10641 5.12667 5.17589 5.20925 5.28474 5.36904 5.44339 5.46658 5.46767 5.51426 5.61853 5.77014 5.95931 6.13284 6.15826 6.32891 6.58089 7.12900 7.25260 7.83560 8.36886 9.19350 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.028074 B = 0.001852 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.134615 B =15112.501706 C =15461.124580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.137 4.137 4 C 0.053 3.947 5 N -0.530 5.530 6 C 0.038 3.962 7 C -0.111 4.111 8 C -0.113 4.113 9 H 0.129 0.871 10 C 0.519 3.481 11 O -0.583 6.583 12 N -0.710 5.710 13 C 0.168 3.832 14 C -0.138 4.138 15 C -0.142 4.142 16 C 0.205 3.795 17 N -0.614 5.614 18 C -0.257 4.257 19 H 0.070 0.930 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.290 1.290 24 H -0.268 1.268 25 H -0.295 1.295 26 C 0.139 3.861 27 C -0.084 4.084 28 C 0.047 3.953 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.413 0.587 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.111 0.889 46 H 0.053 0.947 47 H 0.016 0.984 48 H 0.250 0.750 49 H 0.030 0.970 50 H 0.059 0.941 51 H 0.090 0.910 52 H 0.062 0.938 53 H 0.061 0.939 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.141 1.828 -0.370 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.194 4.194 4 C -0.075 4.075 5 N -0.254 5.254 6 C -0.090 4.090 7 C -0.149 4.149 8 C -0.134 4.134 9 H 0.147 0.853 10 C 0.307 3.693 11 O -0.463 6.463 12 N -0.361 5.361 13 C 0.044 3.956 14 C -0.138 4.138 15 C -0.162 4.162 16 C 0.080 3.920 17 N -0.338 5.338 18 C -0.387 4.387 19 H 0.088 0.912 20 C -0.248 4.248 21 N -0.584 5.584 22 Si 0.793 3.207 23 H -0.217 1.217 24 H -0.192 1.192 25 H -0.222 1.222 26 C 0.014 3.986 27 C -0.122 4.122 28 C -0.082 4.082 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.124 0.876 42 H 0.249 0.751 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.128 0.872 46 H 0.072 0.928 47 H 0.033 0.967 48 H 0.059 0.941 49 H 0.048 0.952 50 H 0.078 0.922 51 H 0.108 0.892 52 H 0.080 0.920 53 H 0.080 0.920 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.881 2.991 0.182 28.042 hybrid contribution 1.163 -0.677 -0.112 1.350 sum -26.719 2.313 0.070 26.819 Atomic orbital electron populations 1.21795 0.94098 1.02105 1.02184 1.21145 0.96056 0.96584 0.97322 1.21704 1.01074 0.95588 1.01083 1.22382 0.86692 0.99373 0.99049 1.64773 1.11138 1.47319 1.02214 1.23298 0.94724 0.97165 0.93772 1.22552 0.97674 1.02433 0.92235 1.22172 0.91757 1.02925 0.96578 0.85292 1.20928 0.85347 0.80395 0.82629 1.90664 1.86631 1.34732 1.34305 1.45998 1.06197 1.44202 1.39700 1.20197 0.82266 0.97221 0.95909 1.20612 0.96711 0.97654 0.98845 1.22834 0.96865 0.99358 0.97171 1.19298 0.92651 0.88121 0.91963 1.44393 1.02264 1.22005 1.65165 1.19516 0.82952 1.28096 1.08147 0.91187 1.25679 1.01515 1.02385 0.95220 1.70181 1.32838 1.46259 1.09098 0.85282 0.80181 0.77898 0.77308 1.21672 1.19213 1.22172 1.21146 0.89173 0.92515 0.95809 1.20702 0.99807 0.93048 0.98682 1.22777 0.94595 0.95984 0.94794 0.91984 0.92235 0.92662 0.90865 0.93188 0.92661 0.93439 0.93919 0.91399 0.91982 0.89509 0.91928 0.87584 0.75090 0.91481 0.92510 0.87159 0.92833 0.96661 0.94132 0.95210 0.92244 0.89165 0.91956 0.92044 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.19 71.98 0.66 -0.71 16 2 C -0.09 -1.12 2.74 -10.79 -0.03 -1.15 16 3 C -0.14 -1.97 9.08 71.98 0.65 -1.32 16 4 C 0.05 0.75 4.23 86.30 0.37 1.11 16 5 N -0.53 -9.20 4.79 -882.67 -4.23 -13.43 16 6 C 0.04 0.51 5.34 86.71 0.46 0.97 16 7 C -0.11 -1.57 6.58 31.86 0.21 -1.36 16 8 C -0.11 -1.86 3.38 -10.66 -0.04 -1.90 16 9 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 10 C 0.52 12.62 7.02 87.66 0.62 13.23 16 11 O -0.58 -19.36 15.24 -3.02 -0.05 -19.41 16 12 N -0.71 -16.00 5.50 -466.78 -2.57 -18.57 16 13 C 0.17 4.60 5.66 85.63 0.48 5.09 16 14 C -0.14 -4.33 5.22 -15.13 -0.08 -4.41 16 15 C -0.14 -5.20 9.46 26.98 0.26 -4.95 16 16 C 0.20 9.72 5.22 85.29 0.45 10.17 16 17 N -0.61 -30.19 3.01 -704.11 -2.12 -32.32 16 18 C -0.26 -14.01 9.69 84.03 0.81 -13.19 16 19 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 20 C -0.05 -2.94 4.94 84.86 0.42 -2.52 16 21 N -0.94 -54.95 11.20 21.65 0.24 -54.71 16 22 Si 0.96 44.86 29.59 68.60 2.03 46.89 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 C 0.14 5.36 6.58 86.25 0.57 5.92 16 27 C -0.08 -2.60 5.95 29.66 0.18 -2.43 16 28 C 0.05 0.87 6.31 86.44 0.55 1.42 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.86 6.65 -2.38 -0.02 0.84 16 33 H 0.05 0.89 7.74 -2.38 -0.02 0.87 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.04 0.53 7.97 -2.39 -0.02 0.51 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 0.66 8.01 -2.39 -0.02 0.64 16 39 H 0.09 1.15 7.55 -2.39 -0.02 1.13 16 40 H 0.06 1.15 7.86 -2.39 -0.02 1.13 16 41 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.41 7.57 8.46 -92.71 -0.78 6.78 16 43 H 0.07 1.88 8.11 -2.38 -0.02 1.86 16 44 H 0.06 1.70 7.78 -2.39 -0.02 1.68 16 45 H 0.11 3.66 7.73 -2.91 -0.02 3.64 16 46 H 0.05 2.91 6.45 -2.38 -0.02 2.89 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 49 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.06 2.24 7.96 -2.39 -0.02 2.22 16 51 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 52 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 53 H 0.06 0.94 7.67 -2.39 -0.02 0.92 16 54 H 0.07 1.87 6.42 -2.39 -0.02 1.86 16 Total: -1.00 -67.90 417.53 -0.09 -67.99 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.07 Total: 19.57 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 6.53 Total: 3.98 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -8.68 Total: -119.03 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.05 Total: -19.41 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -67.90 -0.09 -67.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000767280.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.104 kcal (2) G-P(sol) polarization free energy of solvation -67.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds