Wall clock time and date at job start Tue Mar 31 2020 19:22:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52995 * 109.47251 * 2 1
4 4 N 1.46896 * 109.47292 * 179.97438 * 3 2 1
5 5 C 1.46843 * 111.00323 * 294.21023 * 4 3 2
6 6 C 1.53041 * 109.57704 * 174.19048 * 5 4 3
7 7 C 1.53117 * 109.27556 * 59.08552 * 6 5 4
8 8 C 1.53115 * 109.21227 * 302.43800 * 7 6 5
9 9 H 1.08998 * 109.50545 * 297.64481 * 8 7 6
10 10 C 1.50694 * 109.50461 * 177.56114 * 8 7 6
11 11 O 1.21280 * 120.00603 * 240.00636 * 10 8 7
12 12 N 1.34782 * 119.99945 * 60.00184 * 10 8 7
13 13 C 1.46500 * 120.00280 * 179.97438 * 12 10 8
14 14 C 1.50696 * 109.47202 * 179.97438 * 13 12 10
15 15 C 1.29456 * 117.69098 * 94.74444 * 14 13 12
16 16 C 1.50321 * 123.65307 * 180.59091 * 15 14 13
17 17 N 1.47006 * 109.20096 * 349.49088 * 16 15 14
18 18 C 1.36941 * 121.37567 * 222.76430 * 17 16 15
19 19 H 1.07997 * 119.99530 * 155.96464 * 18 17 16
20 20 C 1.38813 * 119.99718 * 335.95853 * 18 17 16
21 21 N 1.31618 * 120.00187 * 344.52631 * 20 18 17
22 22 Si 1.86800 * 119.99359 * 164.52276 * 20 18 17
23 23 H 1.48492 * 109.47395 * 0.02562 * 22 20 18
24 24 H 1.48502 * 109.46807 * 120.00295 * 22 20 18
25 25 H 1.48500 * 109.47238 * 239.99845 * 22 20 18
26 26 C 1.47339 * 117.24816 * 42.74693 * 17 16 15
27 27 C 1.49962 * 117.69666 * 275.00105 * 14 13 12
28 28 C 1.46853 * 111.00151 * 169.99656 * 4 3 2
29 29 H 1.09001 * 109.47436 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47474 * 299.99914 * 1 2 3
31 31 H 1.09000 * 109.47043 * 60.00301 * 1 2 3
32 32 H 1.09005 * 109.46827 * 239.99826 * 2 1 3
33 33 H 1.08997 * 109.47085 * 120.00228 * 2 1 3
34 34 H 1.08996 * 109.47163 * 60.00032 * 3 2 1
35 35 H 1.09009 * 109.47004 * 299.99879 * 3 2 1
36 36 H 1.08995 * 109.46412 * 294.18084 * 5 4 3
37 37 H 1.09001 * 109.45929 * 54.15065 * 5 4 3
38 38 H 1.09004 * 109.45527 * 299.17602 * 6 5 4
39 39 H 1.09004 * 109.55631 * 179.05649 * 6 5 4
40 40 H 1.08995 * 109.52254 * 182.49972 * 7 6 5
41 41 H 1.09003 * 109.52116 * 62.37775 * 7 6 5
42 42 H 0.97001 * 119.99390 * 0.02562 * 12 10 8
43 43 H 1.09004 * 109.47156 * 300.00659 * 13 12 10
44 44 H 1.09011 * 109.46890 * 59.99745 * 13 12 10
45 45 H 1.07999 * 118.17548 * 0.85218 * 15 14 13
46 46 H 1.09002 * 109.66823 * 229.47589 * 16 15 14
47 47 H 1.08996 * 109.38788 * 109.34341 * 16 15 14
48 48 H 0.97005 * 119.99378 * 179.97438 * 21 20 18
49 49 H 1.09000 * 109.77744 * 178.61882 * 26 17 16
50 50 H 1.09004 * 109.82606 * 57.83025 * 26 17 16
51 51 H 1.09007 * 109.31679 * 281.28989 * 27 14 13
52 52 H 1.09000 * 109.31711 * 40.71380 * 27 14 13
53 53 H 1.08998 * 109.45773 * 65.82874 * 28 4 3
54 54 H 1.08994 * 109.46049 * 305.85878 * 28 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 3.5089 1.4425 0.0006
5 6 4.0347 0.8805 1.2512
6 6 5.5578 0.7619 1.1597
7 6 6.1584 2.1475 0.9072
8 6 5.5583 2.7308 -0.3750
9 1 5.8224 2.0970 -1.2215
10 6 6.1000 4.1193 -0.5977
11 8 5.3426 5.0653 -0.6457
12 7 7.4263 4.3099 -0.7435
13 6 7.9529 5.6596 -0.9606
14 6 9.4530 5.5987 -1.0904
15 6 9.9513 5.5271 -2.2830
16 6 11.4254 5.4474 -2.5666
17 7 12.1711 5.7169 -1.3287
18 6 13.2809 6.5191 -1.3253
19 1 13.5839 7.0176 -0.4164
20 6 14.0163 6.6914 -2.4899
21 7 13.8457 5.8695 -3.5036
22 14 15.2481 8.0899 -2.6182
23 1 15.2514 8.8645 -1.3513
24 1 16.6037 7.5346 -2.8620
25 1 14.8689 8.9818 -3.7433
26 6 11.6749 5.0885 -0.0918
27 6 10.2631 5.6193 0.1714
28 6 4.0353 2.7926 -0.2375
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3634 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 1.6767 1.9563 0.8899
35 1 1.6766 1.9563 -0.8901
36 1 3.7716 1.5347 2.0823
37 1 3.6029 -0.1068 1.4155
38 1 5.8214 0.0958 0.3381
39 1 5.9493 0.3603 2.0944
40 1 7.2394 2.0614 0.7971
41 1 5.9289 2.8026 1.7477
42 1 8.0320 3.5532 -0.7055
43 1 7.5253 6.0739 -1.8737
44 1 7.6871 6.2937 -0.1147
45 1 9.2702 5.5289 -3.1212
46 1 11.6942 6.1859 -3.3219
47 1 11.6705 4.4493 -2.9296
48 1 14.3594 5.9902 -4.3176
49 1 12.3279 5.3482 0.7414
50 1 11.6450 4.0057 -0.2135
51 1 10.3260 6.6422 0.5429
52 1 9.7776 4.9955 0.9219
53 1 3.7723 3.4379 0.6006
54 1 3.6039 3.1941 -1.1543
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001001069606.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:22:54
Heat of formation + Delta-G solvation = -32.529538 kcal
Electronic energy + Delta-G solvation = -29140.701760 eV
Core-core repulsion = 25304.503628 eV
Total energy + Delta-G solvation = -3836.198132 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.34862 -39.75696 -39.12683 -36.42523 -35.93529 -34.53492 -33.02467 -32.51851
-31.97293 -31.40116 -28.62564 -27.22691 -26.19873 -24.89952 -24.32815 -23.88086
-22.83491 -22.23269 -21.30816 -20.65257 -19.49670 -18.50189 -17.37708 -17.26939
-17.00147 -16.68648 -16.34490 -16.26862 -15.69555 -15.58110 -15.45840 -15.20484
-15.11082 -14.89225 -14.70493 -14.46633 -14.19042 -13.93422 -13.78031 -13.53574
-13.48212 -13.26110 -12.92116 -12.83424 -12.80088 -12.61378 -12.58880 -12.44466
-12.20060 -12.09092 -12.06461 -11.94286 -11.70901 -11.60873 -11.42423 -11.29699
-11.26314 -10.81060 -10.68819 -10.10238 -9.64774 -9.32992 -8.74960 -7.88789
-5.29782 1.17828 1.46115 1.48427 1.58226 1.60517 2.32505 2.50938
2.97081 3.28640 3.60035 3.62346 3.73866 3.84755 3.89615 3.97178
4.02433 4.14004 4.21149 4.25881 4.37271 4.43621 4.46741 4.53329
4.56236 4.62306 4.65023 4.68807 4.73282 4.77166 4.80748 4.84589
4.89692 4.92204 4.96983 4.97774 5.10270 5.11189 5.16585 5.21507
5.24916 5.31092 5.36188 5.39502 5.42427 5.44921 5.48474 5.61719
5.76873 6.06089 6.13857 6.16407 6.33883 6.54912 7.13541 7.21463
7.83647 8.37087 9.19878
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.032363 B = 0.001839 C = 0.001816
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 864.973912 B =15220.877171 C =15413.669494
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.115 4.115
3 C 0.054 3.946
4 N -0.542 5.542
5 C 0.047 3.953
6 C -0.110 4.110
7 C -0.110 4.110
8 C -0.094 4.094
9 H 0.117 0.883
10 C 0.517 3.483
11 O -0.587 6.587
12 N -0.709 5.709
13 C 0.167 3.833
14 C -0.138 4.138
15 C -0.142 4.142
16 C 0.205 3.795
17 N -0.615 5.615
18 C -0.256 4.256
19 H 0.070 0.930
20 C -0.054 4.054
21 N -0.939 5.939
22 Si 0.966 3.034
23 H -0.267 1.267
24 H -0.292 1.292
25 H -0.292 1.292
26 C 0.139 3.861
27 C -0.084 4.084
28 C 0.083 3.917
29 H 0.064 0.936
30 H 0.053 0.947
31 H 0.054 0.946
32 H 0.066 0.934
33 H 0.067 0.933
34 H 0.030 0.970
35 H 0.070 0.930
36 H 0.027 0.973
37 H 0.091 0.909
38 H 0.078 0.922
39 H 0.088 0.912
40 H 0.086 0.914
41 H 0.057 0.943
42 H 0.413 0.587
43 H 0.059 0.941
44 H 0.067 0.933
45 H 0.111 0.889
46 H 0.056 0.944
47 H 0.015 0.985
48 H 0.249 0.751
49 H 0.059 0.941
50 H 0.030 0.970
51 H 0.062 0.938
52 H 0.089 0.911
53 H 0.024 0.976
54 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.158 -13.594 10.041 28.669
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.152 4.152
3 C -0.074 4.074
4 N -0.266 5.266
5 C -0.080 4.080
6 C -0.148 4.148
7 C -0.148 4.148
8 C -0.116 4.116
9 H 0.135 0.865
10 C 0.304 3.696
11 O -0.468 6.468
12 N -0.360 5.360
13 C 0.044 3.956
14 C -0.139 4.139
15 C -0.162 4.162
16 C 0.080 3.920
17 N -0.339 5.339
18 C -0.386 4.386
19 H 0.088 0.912
20 C -0.249 4.249
21 N -0.586 5.586
22 Si 0.795 3.205
23 H -0.192 1.192
24 H -0.219 1.219
25 H -0.219 1.219
26 C 0.013 3.987
27 C -0.122 4.122
28 C -0.045 4.045
29 H 0.083 0.917
30 H 0.072 0.928
31 H 0.073 0.927
32 H 0.085 0.915
33 H 0.085 0.915
34 H 0.048 0.952
35 H 0.088 0.912
36 H 0.045 0.955
37 H 0.109 0.891
38 H 0.097 0.903
39 H 0.106 0.894
40 H 0.104 0.896
41 H 0.076 0.924
42 H 0.249 0.751
43 H 0.077 0.923
44 H 0.085 0.915
45 H 0.129 0.871
46 H 0.074 0.926
47 H 0.033 0.967
48 H 0.059 0.941
49 H 0.077 0.923
50 H 0.048 0.952
51 H 0.080 0.920
52 H 0.108 0.892
53 H 0.042 0.958
54 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -23.436 -13.195 9.514 28.528
hybrid contribution 0.906 1.253 -0.033 1.547
sum -22.530 -11.942 9.481 27.205
Atomic orbital electron populations
1.21729 0.94924 1.02299 1.01854 1.21493 0.95920 0.95148 1.02672
1.22184 0.86305 0.98248 1.00624 1.61934 1.08011 1.20858 1.35807
1.22271 0.96203 1.00270 0.89263 1.21577 0.93703 0.96039 1.03475
1.21593 1.01093 0.97334 0.94752 1.21278 0.95920 0.92173 1.02198
0.86468 1.21064 0.81951 0.91607 0.74942 1.90676 1.58400 1.45124
1.52594 1.46040 1.07272 1.10156 1.72580 1.20213 0.89961 0.84267
1.01185 1.20598 0.93718 1.04274 0.95320 1.22943 0.97758 0.98120
0.97421 1.19400 0.85958 0.97745 0.88922 1.44402 1.29244 1.55942
1.04286 1.19550 1.02513 1.19654 0.96876 0.91194 1.25720 1.00354
1.01022 0.97761 1.70170 1.44760 1.37743 1.05918 0.85211 0.78351
0.79266 0.77667 1.19157 1.21895 1.21923 1.21145 0.93754 0.94993
0.88767 1.20691 0.95353 1.01447 0.94726 1.21647 0.93224 0.89063
1.00587 0.91729 0.92772 0.92719 0.91479 0.91473 0.95210 0.91174
0.95511 0.89060 0.90333 0.89351 0.89592 0.92439 0.75084 0.92264
0.91514 0.87097 0.92569 0.96747 0.94139 0.92258 0.95240 0.91993
0.89248 0.95775 0.91426
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.41 9.91 71.98 0.71 -0.70 16
2 C -0.11 -1.28 5.86 30.59 0.18 -1.10 16
3 C 0.05 0.78 4.96 86.30 0.43 1.21 16
4 N -0.54 -8.78 4.66 -896.37 -4.18 -12.95 16
5 C 0.05 0.62 5.29 86.33 0.46 1.08 16
6 C -0.11 -1.25 6.10 30.65 0.19 -1.07 16
7 C -0.11 -1.55 5.16 30.67 0.16 -1.39 16
8 C -0.09 -1.71 2.69 -11.49 -0.03 -1.74 16
9 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16
10 C 0.52 12.76 7.16 87.65 0.63 13.38 16
11 O -0.59 -19.36 15.98 -3.03 -0.05 -19.41 16
12 N -0.71 -16.25 5.45 -466.78 -2.54 -18.79 16
13 C 0.17 4.59 5.66 85.63 0.48 5.07 16
14 C -0.14 -4.37 5.23 -15.14 -0.08 -4.45 16
15 C -0.14 -5.22 9.47 27.10 0.26 -4.96 16
16 C 0.20 9.76 5.23 85.42 0.45 10.20 16
17 N -0.61 -30.27 3.01 -703.38 -2.12 -32.39 16
18 C -0.26 -13.94 9.71 84.03 0.82 -13.13 16
19 H 0.07 3.71 7.88 -2.91 -0.02 3.68 16
20 C -0.05 -2.99 5.01 84.86 0.43 -2.56 16
21 N -0.94 -55.04 11.08 21.65 0.24 -54.80 16
22 Si 0.97 44.83 29.58 68.60 2.03 46.86 16
23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16
24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16
25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16
26 C 0.14 5.37 6.58 86.25 0.57 5.94 16
27 C -0.08 -2.61 5.94 29.65 0.18 -2.43 16
28 C 0.08 1.67 4.03 86.33 0.35 2.02 16
29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16
30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16
31 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16
32 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16
33 H 0.07 0.68 6.43 -2.39 -0.02 0.67 16
34 H 0.03 0.45 8.12 -2.39 -0.02 0.43 16
35 H 0.07 1.08 7.99 -2.38 -0.02 1.06 16
36 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16
37 H 0.09 0.97 6.21 -2.39 -0.01 0.96 16
38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16
39 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16
40 H 0.09 1.02 7.65 -2.39 -0.02 1.00 16
41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
42 H 0.41 7.84 7.93 -92.71 -0.74 7.10 16
43 H 0.06 1.74 7.79 -2.39 -0.02 1.72 16
44 H 0.07 1.87 8.11 -2.38 -0.02 1.85 16
45 H 0.11 3.67 7.74 -2.91 -0.02 3.65 16
46 H 0.06 3.06 6.41 -2.39 -0.02 3.04 16
47 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16
48 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16
49 H 0.06 2.24 7.96 -2.39 -0.02 2.22 16
50 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16
51 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16
52 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16
53 H 0.02 0.56 8.08 -2.39 -0.02 0.54 16
54 H 0.07 1.52 7.99 -2.39 -0.02 1.50 16
Total: -1.00 -66.65 415.50 -0.34 -66.99
By element:
Atomic # 1 Polarization: 19.00 SS G_CDS: 0.12 Total: 19.12 kcal
Atomic # 6 Polarization: -0.78 SS G_CDS: 6.16 Total: 5.38 kcal
Atomic # 7 Polarization: -110.34 SS G_CDS: -8.60 Total: -118.93 kcal
Atomic # 8 Polarization: -19.36 SS G_CDS: -0.05 Total: -19.41 kcal
Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal
Total: -66.65 -0.34 -66.99 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001001069606.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.456 kcal
(2) G-P(sol) polarization free energy of solvation -66.649 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.193 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.986 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.530 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds