Wall clock time and date at job start Tue Mar 31 2020 19:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47319 * 2 1 4 4 N 1.46902 * 109.47241 * 120.00023 * 2 1 3 5 5 C 1.46847 * 110.99571 * 295.66448 * 4 2 1 6 6 C 1.53041 * 109.52057 * 174.15856 * 5 4 2 7 7 C 1.53119 * 109.27733 * 59.18298 * 6 5 4 8 8 C 1.53120 * 109.15322 * 302.33928 * 7 6 5 9 9 C 1.46851 * 110.99900 * 171.46046 * 4 2 1 10 10 H 1.08995 * 109.46691 * 65.83162 * 9 4 2 11 11 C 1.50704 * 109.46019 * 305.84976 * 9 4 2 12 12 O 1.21278 * 119.99814 * 332.02872 * 11 9 4 13 13 N 1.34776 * 119.99697 * 152.02737 * 11 9 4 14 14 C 1.46501 * 119.99853 * 179.72782 * 13 11 9 15 15 C 1.50701 * 109.46856 * 180.27501 * 14 13 11 16 16 C 1.29455 * 117.69357 * 94.74313 * 15 14 13 17 17 C 1.50312 * 123.65583 * 180.58531 * 16 15 14 18 18 N 1.47007 * 109.20000 * 349.49572 * 17 16 15 19 19 C 1.36940 * 121.37367 * 222.71837 * 18 17 16 20 20 H 1.08000 * 119.99897 * 148.07561 * 19 18 17 21 21 C 1.38811 * 120.00113 * 328.06951 * 19 18 17 22 22 N 1.31618 * 120.00144 * 163.92900 * 21 19 18 23 23 Si 1.86803 * 119.99934 * 343.93407 * 21 19 18 24 24 H 1.48497 * 109.47161 * 88.28602 * 23 21 19 25 25 H 1.48503 * 109.47158 * 208.28740 * 23 21 19 26 26 H 1.48497 * 109.46969 * 328.28559 * 23 21 19 27 27 C 1.47341 * 117.25288 * 42.74021 * 18 17 16 28 28 C 1.49970 * 117.69410 * 274.99608 * 15 14 13 29 29 H 1.08997 * 109.47133 * 300.00215 * 1 2 3 30 30 H 1.09000 * 109.46944 * 59.99862 * 1 2 3 31 31 H 1.08996 * 109.46951 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47133 * 239.99785 * 2 1 3 33 33 H 1.08997 * 109.47159 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46866 * 300.00212 * 3 2 1 35 35 H 1.08997 * 109.47193 * 59.99822 * 3 2 1 36 36 H 1.08994 * 109.46527 * 294.17725 * 5 4 2 37 37 H 1.09000 * 109.46165 * 54.15128 * 5 4 2 38 38 H 1.09000 * 109.50283 * 179.12179 * 6 5 4 39 39 H 1.09000 * 109.50627 * 299.24574 * 6 5 4 40 40 H 1.09004 * 109.52527 * 62.24927 * 7 6 5 41 41 H 1.08996 * 109.52806 * 182.37554 * 7 6 5 42 42 H 1.09002 * 109.51302 * 297.72504 * 8 7 6 43 43 H 1.08995 * 109.49755 * 177.60645 * 8 7 6 44 44 H 0.97000 * 119.99976 * 0.02562 * 13 11 9 45 45 H 1.09002 * 109.46820 * 300.27284 * 14 13 11 46 46 H 1.08994 * 109.46942 * 60.27252 * 14 13 11 47 47 H 1.08006 * 118.17311 * 0.85157 * 16 15 14 48 48 H 1.08995 * 109.67757 * 229.47603 * 17 16 15 49 49 H 1.09003 * 109.38643 * 109.33639 * 17 16 15 50 50 H 0.96997 * 120.00025 * 180.02562 * 22 21 19 51 51 H 1.08993 * 109.77831 * 178.61538 * 27 18 17 52 52 H 1.09002 * 109.77535 * 57.80786 * 27 18 17 53 53 H 1.09002 * 109.31440 * 281.29007 * 28 15 14 54 54 H 1.08995 * 109.31116 * 40.71703 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.6353 0.0307 2.4183 6 6 2.0332 -0.7904 3.6470 7 6 3.5456 -1.0283 3.6279 8 6 3.9259 -1.7396 2.3263 9 6 3.4733 -0.8909 1.1359 10 1 3.9738 0.0768 1.1687 11 6 3.8281 -1.5966 -0.1476 12 8 3.0247 -2.3362 -0.6750 13 7 5.0383 -1.4056 -0.7092 14 6 5.3855 -2.0963 -1.9537 15 6 6.7858 -1.7192 -2.3636 16 6 7.7504 -2.5027 -2.0010 17 6 9.1961 -2.2491 -2.3251 18 7 9.2879 -1.1526 -3.2999 19 6 10.1475 -1.2149 -4.3642 20 1 9.8874 -0.7368 -5.2970 21 6 11.3531 -1.8923 -4.2439 22 7 12.0296 -2.2281 -5.3218 23 14 12.0153 -2.3274 -2.5523 24 1 11.4758 -3.6461 -2.1337 25 1 13.4980 -2.3926 -2.6028 26 1 11.5984 -1.2894 -1.5755 27 6 8.4174 0.0164 -3.0844 28 6 6.9642 -0.4596 -3.1579 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 2.1443 0.9941 2.4448 37 1 0.5569 0.1896 2.4215 38 1 1.7618 -0.2463 4.5517 39 1 1.5139 -1.7485 3.6283 40 1 4.0656 -0.0720 3.6859 41 1 3.8277 -1.6484 4.4787 42 1 3.4362 -2.7126 2.2867 43 1 5.0069 -1.8738 2.2875 44 1 5.6811 -0.8143 -0.2871 45 1 5.3299 -3.1738 -1.7989 46 1 4.6865 -1.8053 -2.7378 47 1 7.5022 -3.3901 -1.4377 48 1 9.6410 -3.1501 -2.7475 49 1 9.7279 -1.9726 -1.4147 50 1 12.8719 -2.7017 -5.2378 51 1 8.6013 0.7610 -3.8588 52 1 8.6151 0.4475 -2.1029 53 1 6.6990 -0.6488 -4.1981 54 1 6.3103 0.3149 -2.7572 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001230571.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:22 Heat of formation + Delta-G solvation = -18.935107 kcal Electronic energy + Delta-G solvation = -30331.301263 eV Core-core repulsion = 26495.692631 eV Total energy + Delta-G solvation = -3835.608633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.64381 -39.93537 -39.08546 -36.48876 -36.07455 -34.58064 -33.13626 -32.14485 -31.93866 -31.18483 -28.76614 -28.13628 -26.24354 -25.25010 -24.93711 -24.42474 -22.85064 -21.67418 -21.50929 -20.24096 -19.68878 -18.50062 -17.58324 -17.45178 -17.29682 -16.58355 -16.51652 -16.04654 -15.75399 -15.54969 -15.46236 -15.29950 -15.10958 -14.83409 -14.59853 -14.51496 -14.39593 -14.18693 -13.79555 -13.74122 -13.55116 -13.41050 -13.23283 -12.94679 -12.89796 -12.68400 -12.57434 -12.41733 -12.21573 -12.14847 -12.07764 -11.99512 -11.62698 -11.60463 -11.54641 -11.39215 -11.17773 -10.76465 -10.69013 -10.10741 -9.82084 -9.19183 -8.88886 -8.18097 -5.57347 1.05674 1.31149 1.40537 1.50038 1.59293 2.26252 2.41052 2.91190 3.06334 3.29226 3.64540 3.72755 3.82308 3.89006 3.91440 4.03591 4.08108 4.17069 4.29489 4.30373 4.33163 4.37692 4.41097 4.53500 4.57160 4.63157 4.64964 4.67753 4.71617 4.74839 4.79007 4.80754 4.84020 4.90511 4.92121 4.99066 5.03707 5.04654 5.11230 5.18873 5.23965 5.27700 5.29153 5.37072 5.39412 5.48692 5.60809 5.87033 5.97363 6.03967 6.14992 6.19874 6.57145 6.88911 7.24381 7.57804 8.03249 9.02083 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.020270 B = 0.002514 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.012744 B =11132.764840 C =11780.115429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.066 3.934 3 C -0.181 4.181 4 N -0.524 5.524 5 C 0.050 3.950 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.106 4.106 9 C 0.076 3.924 10 H 0.077 0.923 11 C 0.515 3.485 12 O -0.565 6.565 13 N -0.713 5.713 14 C 0.168 3.832 15 C -0.127 4.127 16 C -0.141 4.141 17 C 0.143 3.857 18 N -0.623 5.623 19 C -0.249 4.249 20 H 0.048 0.952 21 C -0.034 4.034 22 N -0.960 5.960 23 Si 0.952 3.048 24 H -0.270 1.270 25 H -0.311 1.311 26 H -0.258 1.258 27 C 0.140 3.860 28 C -0.088 4.088 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.412 0.588 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.124 0.876 48 H 0.057 0.943 49 H 0.044 0.956 50 H 0.262 0.738 51 H 0.059 0.941 52 H 0.047 0.953 53 H 0.059 0.941 54 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.487 7.362 21.403 31.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.042 4.042 3 C -0.240 4.240 4 N -0.250 5.250 5 C -0.076 4.076 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.144 4.144 9 C -0.036 4.036 10 H 0.094 0.906 11 C 0.302 3.698 12 O -0.443 6.443 13 N -0.366 5.366 14 C 0.045 3.955 15 C -0.128 4.128 16 C -0.161 4.161 17 C 0.019 3.981 18 N -0.348 5.348 19 C -0.378 4.378 20 H 0.066 0.934 21 C -0.229 4.229 22 N -0.606 5.606 23 Si 0.780 3.220 24 H -0.196 1.196 25 H -0.239 1.239 26 H -0.182 1.182 27 C 0.016 3.984 28 C -0.127 4.127 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.248 0.752 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.142 0.858 48 H 0.075 0.925 49 H 0.062 0.938 50 H 0.071 0.929 51 H 0.078 0.922 52 H 0.065 0.935 53 H 0.078 0.922 54 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.166 6.312 20.958 31.871 hybrid contribution 1.575 0.337 -0.126 1.616 sum -21.591 6.649 20.832 30.730 Atomic orbital electron populations 1.21751 0.93335 1.01775 1.02347 1.21793 0.96866 0.92610 0.92910 1.22441 1.01077 0.97209 1.03262 1.61918 1.10042 1.50191 1.02836 1.22278 1.01515 0.95293 0.88560 1.21627 0.95965 1.00632 0.97279 1.21563 0.96348 1.01029 0.96282 1.21552 1.01198 0.98590 0.93056 1.21591 0.90631 0.98880 0.92486 0.90579 1.20943 0.81139 0.81624 0.86100 1.90687 1.50081 1.38921 1.64597 1.46067 1.16342 1.48641 1.25501 1.20191 0.92753 0.96458 0.86127 1.20631 0.93458 0.98279 1.00414 1.22619 0.94527 0.99432 0.99529 1.20298 0.94138 0.91317 0.92361 1.44527 1.45813 1.16082 1.28412 1.18764 0.96439 1.32345 0.90290 0.93443 1.26083 0.96564 0.99916 1.00349 1.69938 1.17188 1.43522 1.29952 0.85839 0.75775 0.78991 0.81370 1.19599 1.23923 1.18240 1.21217 0.89056 0.88583 0.99569 1.20713 0.97783 0.95146 0.99014 0.91277 0.91712 0.93342 0.91947 0.93039 0.91648 0.90945 0.93504 0.89583 0.89539 0.92205 0.90857 0.90392 0.92370 0.90138 0.75226 0.91907 0.91664 0.85829 0.92508 0.93846 0.92874 0.92200 0.93454 0.92214 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.09 71.98 0.65 -1.49 16 2 C 0.07 1.23 2.55 44.91 0.11 1.34 16 3 C -0.18 -2.56 8.47 71.98 0.61 -1.95 16 4 N -0.52 -9.46 4.21 -850.37 -3.58 -13.04 16 5 C 0.05 0.63 4.57 86.33 0.39 1.03 16 6 C -0.12 -1.27 6.09 30.65 0.19 -1.08 16 7 C -0.11 -1.22 6.00 30.67 0.18 -1.03 16 8 C -0.11 -1.60 5.36 30.65 0.16 -1.44 16 9 C 0.08 1.32 1.87 44.19 0.08 1.40 16 10 H 0.08 1.07 6.83 -2.39 -0.02 1.06 16 11 C 0.52 12.10 5.85 87.66 0.51 12.62 16 12 O -0.56 -18.13 15.19 -3.02 -0.05 -18.18 16 13 N -0.71 -14.84 5.55 -466.79 -2.59 -17.43 16 14 C 0.17 4.21 5.66 85.63 0.48 4.70 16 15 C -0.13 -3.61 5.23 -15.14 -0.08 -3.69 16 16 C -0.14 -4.47 9.47 27.10 0.26 -4.21 16 17 C 0.14 5.82 4.41 85.41 0.38 6.19 16 18 N -0.62 -28.59 2.71 -703.42 -1.91 -30.49 16 19 C -0.25 -14.05 10.09 84.03 0.85 -13.21 16 20 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 21 C -0.03 -1.99 5.30 84.86 0.45 -1.54 16 22 N -0.96 -60.43 13.97 21.65 0.30 -60.13 16 23 Si 0.95 45.68 24.22 68.60 1.66 47.35 16 24 H -0.27 -12.13 6.66 99.48 0.66 -11.47 16 25 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 26 H -0.26 -11.64 6.59 99.48 0.66 -10.99 16 27 C 0.14 5.05 6.58 86.25 0.57 5.62 16 28 C -0.09 -2.57 5.95 29.65 0.18 -2.40 16 29 H 0.07 0.86 6.38 -2.39 -0.02 0.85 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.57 5.73 -2.39 -0.01 1.55 16 33 H 0.05 0.74 6.76 -2.39 -0.02 0.73 16 34 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 0.83 6.47 -2.39 -0.02 0.81 16 36 H 0.05 0.51 6.58 -2.39 -0.02 0.49 16 37 H 0.09 0.99 6.15 -2.39 -0.01 0.97 16 38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.41 6.78 8.46 -92.71 -0.78 5.99 16 45 H 0.06 1.68 7.79 -2.39 -0.02 1.66 16 46 H 0.07 1.73 8.11 -2.39 -0.02 1.71 16 47 H 0.12 3.36 7.74 -2.91 -0.02 3.34 16 48 H 0.06 2.58 5.74 -2.39 -0.01 2.56 16 49 H 0.04 1.72 6.19 -2.39 -0.01 1.71 16 50 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 51 H 0.06 2.22 7.96 -2.39 -0.02 2.20 16 52 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 53 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 54 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -71.32 399.72 -0.18 -71.50 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.00 Total: 19.57 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 5.98 Total: 0.85 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -7.78 Total: -121.08 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.05 Total: -18.18 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.66 Total: 47.35 kcal Total: -71.32 -0.18 -71.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001230571.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.566 kcal (2) G-P(sol) polarization free energy of solvation -71.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds