Wall clock time and date at job start Tue Mar 31 2020 19:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47171 * 2 1 4 4 H 1.08997 * 109.91041 * 306.59492 * 3 2 1 5 5 C 1.53992 * 109.91907 * 185.48813 * 3 2 1 6 6 H 1.09006 * 110.30646 * 358.24056 * 5 3 2 7 7 C 1.50697 * 110.31149 * 120.30924 * 5 3 2 8 8 O 1.21287 * 119.99928 * 359.97438 * 7 5 3 9 9 N 1.34777 * 120.00624 * 180.02562 * 7 5 3 10 10 C 1.46495 * 120.00246 * 180.27891 * 9 7 5 11 11 H 1.08999 * 115.55554 * 9.03267 * 10 9 7 12 12 C 1.53029 * 117.49982 * 223.30600 * 10 9 7 13 13 C 1.52820 * 117.50193 * 154.72332 * 10 9 7 14 14 C 1.53178 * 117.71442 * 359.85675 * 13 10 9 15 15 C 1.53347 * 108.77130 * 158.88997 * 14 13 10 16 16 N 1.46843 * 108.81734 * 51.30835 * 15 14 13 17 17 C 1.36932 * 120.38509 * 123.11630 * 16 15 14 18 18 H 1.07997 * 120.00522 * 325.76896 * 17 16 15 19 19 C 1.38810 * 119.99751 * 145.76765 * 17 16 15 20 20 N 1.31620 * 120.00413 * 347.68900 * 19 17 16 21 21 Si 1.86801 * 120.00095 * 167.68089 * 19 17 16 22 22 H 1.48506 * 109.47201 * 90.00086 * 21 19 17 23 23 H 1.48502 * 109.47392 * 210.00189 * 21 19 17 24 24 H 1.48505 * 109.46990 * 330.00412 * 21 19 17 25 25 C 1.46853 * 119.22729 * 303.10062 * 16 15 14 26 26 C 1.53179 * 117.71221 * 215.09449 * 13 10 9 27 27 C 1.54596 * 105.14190 * 239.22808 * 5 3 2 28 28 C 1.54938 * 102.92172 * 338.04217 * 27 5 3 29 29 N 1.47904 * 110.07889 * 67.80033 * 3 2 1 30 30 C 1.46897 * 111.00232 * 265.28577 * 29 3 2 31 31 H 1.09002 * 109.47204 * 50.53619 * 1 2 3 32 32 H 1.09004 * 109.47211 * 170.53987 * 1 2 3 33 33 H 1.09001 * 109.46761 * 290.53344 * 1 2 3 34 34 H 1.08998 * 109.47077 * 240.00085 * 2 1 3 35 35 H 1.08998 * 109.47388 * 120.00528 * 2 1 3 36 36 H 0.97006 * 119.99092 * 359.97438 * 9 7 5 37 37 H 1.09000 * 117.50209 * 359.97438 * 12 10 9 38 38 H 1.08999 * 117.50364 * 145.04411 * 12 10 9 39 39 H 1.09002 * 109.59183 * 278.68111 * 14 13 10 40 40 H 1.08999 * 109.58912 * 39.10522 * 14 13 10 41 41 H 1.09000 * 109.58323 * 291.50349 * 15 14 13 42 42 H 1.09004 * 109.69096 * 171.17110 * 15 14 13 43 43 H 0.96998 * 120.00014 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.57920 * 297.10098 * 25 16 15 45 45 H 1.09004 * 109.68488 * 176.77378 * 25 16 15 46 46 H 1.09006 * 109.59026 * 320.90033 * 26 13 10 47 47 H 1.09000 * 109.58773 * 81.18789 * 26 13 10 48 48 H 1.08998 * 110.72233 * 96.39709 * 27 5 3 49 49 H 1.09005 * 110.72479 * 219.68383 * 27 5 3 50 50 H 1.09006 * 110.66554 * 278.98300 * 28 27 5 51 51 H 1.08990 * 110.81330 * 155.91695 * 28 27 5 52 52 H 1.09003 * 109.46725 * 65.18306 * 30 29 3 53 53 H 1.08995 * 109.47621 * 185.18246 * 30 29 3 54 54 H 1.08993 * 109.47273 * 305.18916 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5877 1.9961 -0.8228 5 6 3.5736 1.4567 -0.1385 6 1 3.9597 0.4379 -0.1745 7 6 3.9801 2.2133 -1.3768 8 8 3.1330 2.7022 -2.0941 9 7 5.2847 2.3458 -1.6878 10 6 5.6800 3.0865 -2.8883 11 1 4.8790 3.6278 -3.3918 12 6 6.7821 2.4817 -3.7609 13 6 7.0737 3.7133 -2.9039 14 6 7.9534 3.5248 -1.6642 15 6 9.4188 3.7397 -2.0617 16 7 9.5331 5.0171 -2.7768 17 6 10.3858 5.9892 -2.3263 18 1 10.5493 6.1153 -1.2662 19 6 11.0402 6.8126 -3.2321 20 7 11.0377 6.5140 -4.5140 21 14 11.9245 8.3447 -2.6319 22 1 13.3323 8.0065 -2.3017 23 1 11.9007 9.3793 -3.6971 24 1 11.2434 8.8665 -1.4198 25 6 8.7226 5.2398 -3.9810 26 6 7.2431 5.0555 -3.6223 27 6 4.0866 2.1826 1.1264 28 6 2.8531 3.0040 1.5787 29 7 1.7144 2.0962 1.2862 30 6 0.4545 2.8456 1.1918 31 1 -0.3634 0.6532 -0.7934 32 1 -0.3634 -1.0137 -0.1689 33 1 -0.3633 0.3605 0.9624 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 5.9621 1.9545 -1.1143 37 1 7.2133 1.5330 -3.4414 38 1 6.7063 2.6250 -4.8387 39 1 7.6712 4.2511 -0.9019 40 1 7.8247 2.5149 -1.2749 41 1 9.7441 2.9270 -2.7112 42 1 10.0420 3.7645 -1.1677 43 1 11.4953 7.0892 -5.1469 44 1 9.0047 4.5200 -4.7495 45 1 8.8855 6.2520 -4.3512 46 1 6.6431 5.0613 -4.5323 47 1 6.9204 5.8642 -2.9666 48 1 4.3738 1.4639 1.8938 49 1 4.9200 2.8412 0.8819 50 1 2.7702 3.9239 0.9998 51 1 2.9048 3.2251 2.6447 52 1 -0.3690 2.1519 1.0225 53 1 0.2854 3.3906 2.1204 54 1 0.5122 3.5502 0.3623 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016631131.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:42 Heat of formation + Delta-G solvation = -12.650658 kcal Electronic energy + Delta-G solvation = -30208.124342 eV Core-core repulsion = 26372.788223 eV Total energy + Delta-G solvation = -3835.336119 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.67883 -40.35959 -38.99357 -37.09773 -34.74523 -34.11192 -33.64856 -32.88406 -31.65192 -29.96338 -29.06154 -27.07419 -26.22887 -24.35838 -24.03151 -23.32567 -22.88816 -22.20975 -21.39213 -20.75844 -19.82175 -18.57248 -18.00755 -17.41837 -16.85495 -16.83109 -16.38478 -15.96792 -15.71323 -15.57586 -15.35436 -15.07190 -14.83264 -14.72023 -14.27510 -14.21851 -14.12444 -13.97571 -13.81112 -13.35585 -13.30263 -13.12712 -13.07960 -12.87437 -12.61149 -12.58153 -12.48534 -12.40070 -12.29513 -12.15204 -12.01375 -11.82761 -11.75486 -11.63392 -11.42710 -11.38402 -11.27352 -10.93748 -10.65502 -10.50662 -9.68111 -9.46667 -8.54769 -7.86229 -5.39651 1.45434 1.46979 1.49514 1.56174 1.99823 2.50312 2.92749 3.01689 3.29694 3.45226 3.60756 3.63983 3.70980 3.80301 3.86540 3.98106 4.12131 4.12731 4.16701 4.32834 4.40610 4.42362 4.52521 4.54241 4.57039 4.60347 4.68626 4.72792 4.75416 4.83635 4.88860 4.89977 4.92986 4.97135 4.98230 5.03803 5.08121 5.11532 5.12333 5.16143 5.16603 5.30541 5.32414 5.38281 5.46757 5.49455 5.55255 5.65841 5.76055 5.86649 6.03736 6.43968 6.49392 7.17658 7.18107 7.87908 8.41427 9.18393 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.022353 B = 0.002343 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.312428 B =11947.703084 C =12460.925659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C 0.070 3.930 4 H 0.050 0.950 5 C -0.113 4.113 6 H 0.135 0.865 7 C 0.519 3.481 8 O -0.584 6.584 9 N -0.682 5.682 10 C 0.084 3.916 11 H 0.114 0.886 12 C -0.169 4.169 13 C -0.113 4.113 14 C -0.081 4.081 15 C 0.145 3.855 16 N -0.608 5.608 17 C -0.264 4.264 18 H 0.063 0.937 19 C -0.048 4.048 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.282 1.282 23 H -0.294 1.294 24 H -0.271 1.271 25 C 0.185 3.815 26 C -0.095 4.095 27 C -0.108 4.108 28 C 0.028 3.972 29 N -0.510 5.510 30 C 0.010 3.990 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.415 0.585 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.016 0.984 42 H 0.055 0.945 43 H 0.250 0.750 44 H -0.001 1.001 45 H 0.047 0.953 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.112 0.888 49 H 0.078 0.922 50 H 0.024 0.976 51 H 0.101 0.899 52 H 0.083 0.917 53 H 0.078 0.922 54 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.266 -14.703 12.346 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.038 4.038 4 H 0.068 0.932 5 C -0.135 4.135 6 H 0.152 0.848 7 C 0.307 3.693 8 O -0.464 6.464 9 N -0.332 5.332 10 C -0.022 4.022 11 H 0.132 0.868 12 C -0.207 4.207 13 C -0.115 4.115 14 C -0.120 4.120 15 C 0.019 3.981 16 N -0.331 5.331 17 C -0.395 4.395 18 H 0.080 0.920 19 C -0.243 4.243 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.209 1.209 23 H -0.220 1.220 24 H -0.195 1.195 25 C 0.060 3.940 26 C -0.134 4.134 27 C -0.146 4.146 28 C -0.100 4.100 29 N -0.234 5.234 30 C -0.139 4.139 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.253 0.747 37 H 0.130 0.870 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.018 0.982 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.130 0.870 49 H 0.097 0.903 50 H 0.042 0.958 51 H 0.119 0.881 52 H 0.101 0.899 53 H 0.097 0.903 54 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -18.874 -14.667 12.147 26.812 hybrid contribution 1.074 1.812 -0.975 2.321 sum -17.800 -12.855 11.172 24.635 Atomic orbital electron populations 1.21825 0.95598 1.01740 1.01555 1.21490 0.96479 0.93674 1.02434 1.22465 0.92691 0.97348 0.91331 0.93232 1.22264 0.97238 1.01841 0.92170 0.84750 1.21043 0.81906 0.79382 0.86930 1.90659 1.51439 1.50583 1.53699 1.45276 1.07456 1.54623 1.25829 1.21591 0.91764 0.99237 0.89607 0.86848 1.23602 1.01223 0.97591 0.98292 1.21793 0.96054 0.94322 0.99324 1.21440 0.94788 1.01142 0.94640 1.21015 0.94795 0.87090 0.95158 1.44162 1.45911 1.13252 1.29800 1.19446 1.18379 1.10201 0.91438 0.91961 1.25957 0.99118 1.03305 0.95953 1.70141 1.46722 1.38793 1.02266 0.85319 0.78638 0.79406 0.77326 1.20899 1.22041 1.19539 1.20440 0.87316 0.98722 0.87570 1.21631 0.98104 0.94988 0.98670 1.22556 0.97135 0.99394 0.95491 1.23329 0.90633 0.93992 1.02049 1.64793 1.02516 1.27153 1.28968 1.22698 0.92878 0.97543 1.00771 0.94164 0.91845 0.91846 0.91667 0.90059 0.74719 0.86996 0.88403 0.92469 0.89506 0.96555 0.92624 0.94126 0.98249 0.93444 0.91863 0.93472 0.86987 0.90320 0.95761 0.88123 0.89867 0.90318 0.97038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.71 71.98 0.63 -1.48 16 2 C -0.10 -1.51 5.39 30.59 0.16 -1.35 16 3 C 0.07 1.32 2.19 45.06 0.10 1.42 16 4 H 0.05 1.28 5.89 -2.39 -0.01 1.26 16 5 C -0.11 -1.86 3.02 -10.66 -0.03 -1.89 16 6 H 0.13 1.51 7.69 -2.38 -0.02 1.50 16 7 C 0.52 12.35 7.06 87.66 0.62 12.96 16 8 O -0.58 -19.17 14.80 -3.05 -0.05 -19.21 16 9 N -0.68 -14.64 5.13 -442.78 -2.27 -16.91 16 10 C 0.08 2.27 6.14 44.94 0.28 2.55 16 11 H 0.11 3.54 7.40 -2.39 -0.02 3.52 16 12 C -0.17 -4.42 9.86 30.55 0.30 -4.12 16 13 C -0.11 -3.49 1.94 -52.17 -0.10 -3.59 16 14 C -0.08 -2.41 5.37 30.77 0.17 -2.25 16 15 C 0.14 5.67 6.51 86.43 0.56 6.23 16 16 N -0.61 -30.07 2.91 -698.89 -2.04 -32.11 16 17 C -0.26 -14.42 9.51 84.03 0.80 -13.62 16 18 H 0.06 3.31 7.86 -2.91 -0.02 3.29 16 19 C -0.05 -2.66 4.99 84.86 0.42 -2.23 16 20 N -0.93 -55.34 11.28 21.65 0.24 -55.10 16 21 Si 0.97 44.77 29.57 68.60 2.03 46.79 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 25 C 0.19 8.93 5.34 86.43 0.46 9.39 16 26 C -0.09 -3.60 5.83 30.77 0.18 -3.42 16 27 C -0.11 -1.47 6.59 31.80 0.21 -1.26 16 28 C 0.03 0.47 6.56 86.65 0.57 1.03 16 29 N -0.51 -8.88 5.10 -884.08 -4.51 -13.39 16 30 C 0.01 0.16 9.11 127.69 1.16 1.33 16 31 H 0.04 0.65 8.09 -2.39 -0.02 0.63 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.86 6.42 -2.39 -0.02 0.85 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.41 6.61 7.12 -92.70 -0.66 5.95 16 37 H 0.11 2.50 8.14 -2.39 -0.02 2.49 16 38 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.09 1.87 6.75 -2.39 -0.02 1.85 16 41 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.06 2.13 7.92 -2.38 -0.02 2.11 16 43 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 45 H 0.05 2.62 6.18 -2.38 -0.01 2.60 16 46 H 0.06 2.20 8.10 -2.38 -0.02 2.18 16 47 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.08 1.11 7.68 -2.38 -0.02 1.10 16 50 H 0.02 0.51 8.02 -2.38 -0.02 0.49 16 51 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 52 H 0.08 1.24 5.44 -2.39 -0.01 1.23 16 53 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 54 H 0.01 0.23 7.95 -2.39 -0.02 0.21 16 Total: -1.00 -69.04 408.78 0.11 -68.93 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.21 Total: 21.29 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 6.49 Total: -0.29 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -8.57 Total: -117.51 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.05 Total: -19.21 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -69.04 0.11 -68.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016631131.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.281 kcal (2) G-P(sol) polarization free energy of solvation -69.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds