Wall clock time and date at job start Tue Mar 31 2020 19:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.47064 * 2 1 4 4 N 1.46898 * 109.46879 * 180.02562 * 3 2 1 5 5 C 1.48556 * 111.00145 * 285.41771 * 4 3 2 6 6 C 1.54381 * 104.59732 * 200.96207 * 5 4 3 7 7 C 1.54262 * 105.05897 * 23.85337 * 6 5 4 8 8 C 1.48559 * 110.99701 * 170.00012 * 4 3 2 9 9 H 1.09000 * 110.51578 * 40.20953 * 8 4 3 10 10 C 1.50701 * 110.41257 * 277.81956 * 8 4 3 11 11 O 1.21274 * 120.00138 * 3.37077 * 10 8 4 12 12 N 1.34780 * 120.00048 * 183.37413 * 10 8 4 13 13 C 1.46498 * 119.99900 * 179.97438 * 12 10 8 14 14 H 1.08999 * 115.55084 * 9.31421 * 13 12 10 15 15 C 1.53029 * 117.50053 * 223.58533 * 13 12 10 16 16 C 1.52816 * 117.50232 * 154.99722 * 13 12 10 17 17 C 1.53181 * 117.71911 * 215.10026 * 16 13 12 18 18 C 1.53342 * 108.77112 * 201.11952 * 17 16 13 19 19 N 1.46843 * 108.81757 * 308.68912 * 18 17 16 20 20 C 1.36937 * 120.38535 * 236.87914 * 19 18 17 21 21 H 1.07998 * 120.00097 * 28.62678 * 20 19 18 22 22 C 1.38812 * 119.99562 * 208.63130 * 20 19 18 23 23 N 1.31623 * 119.99338 * 199.92618 * 22 20 19 24 24 Si 1.86797 * 120.00473 * 19.92767 * 22 20 19 25 25 H 1.48495 * 109.47221 * 265.33302 * 24 22 20 26 26 H 1.48503 * 109.47027 * 25.33572 * 24 22 20 27 27 H 1.48505 * 109.46968 * 145.33012 * 24 22 20 28 28 C 1.46850 * 119.23373 * 57.15082 * 19 18 17 29 29 C 1.53188 * 117.71394 * 359.86880 * 16 13 12 30 30 H 1.08997 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47385 * 299.99671 * 1 2 3 32 32 H 1.08996 * 109.47409 * 60.00376 * 1 2 3 33 33 H 1.09006 * 109.47385 * 240.00329 * 2 1 3 34 34 H 1.09002 * 109.47617 * 120.00311 * 2 1 3 35 35 H 1.08993 * 109.46997 * 59.99937 * 3 2 1 36 36 H 1.08996 * 109.46700 * 300.00058 * 3 2 1 37 37 H 1.09004 * 110.41528 * 82.18355 * 5 4 3 38 38 H 1.09005 * 110.51115 * 319.79045 * 5 4 3 39 39 H 1.08995 * 110.32642 * 264.95654 * 6 5 4 40 40 H 1.08998 * 110.32434 * 142.74559 * 6 5 4 41 41 H 1.09001 * 110.32613 * 241.10460 * 7 6 5 42 42 H 1.09002 * 110.41300 * 118.93773 * 7 6 5 43 43 H 0.96999 * 119.99896 * 359.97438 * 12 10 8 44 44 H 1.09003 * 117.50392 * 145.05188 * 15 13 12 45 45 H 1.09003 * 117.50834 * 359.97438 * 15 13 12 46 46 H 1.09004 * 109.58575 * 81.32720 * 17 16 13 47 47 H 1.09005 * 109.70371 * 320.97931 * 17 16 13 48 48 H 1.09001 * 109.58032 * 188.89243 * 18 17 16 49 49 H 1.08994 * 109.69258 * 68.55879 * 18 17 16 50 50 H 0.97007 * 119.99619 * 179.97438 * 23 22 20 51 51 H 1.08995 * 109.57847 * 62.65327 * 28 19 18 52 52 H 1.08995 * 109.57795 * 183.05549 * 28 19 18 53 53 H 1.09006 * 109.58409 * 278.66439 * 29 16 13 54 54 H 1.08998 * 109.58742 * 39.09182 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4425 -0.0006 5 6 4.0419 1.0736 1.3361 6 6 5.4838 1.6251 1.3458 7 6 5.4833 2.7665 0.3080 8 6 4.0412 2.8084 -0.2415 9 1 3.4504 3.5491 0.2975 10 6 4.0495 3.1167 -1.7166 11 8 3.5971 2.3151 -2.5062 12 7 4.5598 4.2833 -2.1584 13 6 4.5684 4.5828 -3.5924 14 1 4.0068 3.8912 -4.2204 15 6 5.8422 5.1955 -4.1787 16 6 4.5892 6.0537 -4.0060 17 6 3.8188 6.4496 -5.2694 18 6 4.3772 7.7788 -5.7917 19 7 4.4005 8.7486 -4.6894 20 6 3.7411 9.9433 -4.8039 21 1 2.8652 10.0187 -5.4313 22 6 4.1984 11.0574 -4.1136 23 7 3.3908 12.0734 -3.8952 24 14 5.9600 11.1146 -3.4947 25 1 6.0042 10.6536 -2.0839 26 1 6.8078 10.2283 -4.3320 27 1 6.4684 12.5075 -3.5766 28 6 5.1441 8.4251 -3.4652 29 6 4.5965 7.1066 -2.8934 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6766 1.9563 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 4.0485 -0.0097 1.4570 38 1 3.4512 1.5398 2.1247 39 1 6.1887 0.8472 1.0527 40 1 5.7345 2.0118 2.3335 41 1 6.1880 2.5487 -0.4946 42 1 5.7345 3.7140 0.7847 43 1 4.9213 4.9246 -1.5268 44 1 6.1189 4.9071 -5.1928 45 1 6.6737 5.3762 -3.4974 46 1 2.7614 6.5657 -5.0312 47 1 3.9393 5.6783 -6.0302 48 1 3.7405 8.1525 -6.5937 49 1 5.3890 7.6294 -6.1683 50 1 3.7102 12.8519 -3.4124 51 1 6.2027 8.3130 -3.6996 52 1 5.0122 9.2243 -2.7358 53 1 3.5811 7.2582 -2.5271 54 1 5.2354 6.7708 -2.0766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016651246.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:38 Heat of formation + Delta-G solvation = -8.273284 kcal Electronic energy + Delta-G solvation = -30080.293681 eV Core-core repulsion = 26245.147380 eV Total energy + Delta-G solvation = -3835.146301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.45949 -40.33535 -38.90239 -37.23547 -35.56170 -34.51056 -33.52544 -32.03535 -31.74216 -30.70968 -29.83254 -26.49480 -26.03431 -24.65382 -24.27130 -23.08683 -22.69132 -22.09026 -21.37974 -21.04039 -19.92007 -18.61686 -18.22673 -17.44987 -17.14843 -17.03232 -16.21471 -15.99126 -15.87023 -15.65761 -15.46646 -15.31394 -14.96228 -14.63298 -14.42495 -14.35773 -14.24642 -14.02745 -13.84353 -13.63530 -13.56230 -13.45684 -12.99061 -12.89982 -12.60023 -12.57699 -12.36842 -12.26463 -12.25489 -12.16819 -12.09514 -11.84865 -11.60544 -11.57845 -11.50157 -11.46508 -11.29906 -10.90634 -10.74011 -10.59280 -9.67037 -9.47892 -8.84737 -8.15501 -5.47935 1.29604 1.42945 1.52410 1.57487 1.96508 2.42532 2.91659 2.99341 3.08660 3.36142 3.51805 3.56532 3.72340 3.82082 3.91093 3.94258 3.97655 4.02805 4.11077 4.17487 4.26143 4.38059 4.44572 4.50090 4.52406 4.55299 4.61297 4.69640 4.70705 4.72586 4.80538 4.84989 4.87132 4.89130 4.94514 4.96696 4.98619 5.02439 5.10894 5.13156 5.15168 5.21433 5.21545 5.30398 5.31364 5.36300 5.50731 5.53977 5.78994 5.89205 6.02493 6.14257 6.55116 6.95050 7.26126 7.65031 8.05057 9.04750 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.002548 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.483247 B =10985.980547 C =11306.380193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C 0.049 3.951 4 N -0.508 5.508 5 C 0.031 3.969 6 C -0.118 4.118 7 C -0.112 4.112 8 C 0.043 3.957 9 H 0.090 0.910 10 C 0.523 3.477 11 O -0.565 6.565 12 N -0.690 5.690 13 C 0.086 3.914 14 H 0.120 0.880 15 C -0.163 4.163 16 C -0.120 4.120 17 C -0.089 4.089 18 C 0.148 3.852 19 N -0.619 5.619 20 C -0.249 4.249 21 H 0.046 0.954 22 C -0.039 4.039 23 N -0.961 5.961 24 Si 0.952 3.048 25 H -0.271 1.271 26 H -0.258 1.258 27 H -0.314 1.314 28 C 0.126 3.874 29 C -0.086 4.086 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.411 0.589 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.047 0.953 47 H 0.084 0.916 48 H 0.052 0.948 49 H 0.040 0.960 50 H 0.261 0.739 51 H 0.040 0.960 52 H 0.048 0.952 53 H 0.051 0.949 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.041 -24.865 13.144 28.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.079 4.079 4 N -0.233 5.233 5 C -0.096 4.096 6 C -0.156 4.156 7 C -0.151 4.151 8 C -0.069 4.069 9 H 0.107 0.893 10 C 0.310 3.690 11 O -0.442 6.442 12 N -0.341 5.341 13 C -0.020 4.020 14 H 0.137 0.863 15 C -0.201 4.201 16 C -0.122 4.122 17 C -0.128 4.128 18 C 0.023 3.977 19 N -0.344 5.344 20 C -0.379 4.379 21 H 0.064 0.936 22 C -0.233 4.233 23 N -0.607 5.607 24 Si 0.781 3.219 25 H -0.198 1.198 26 H -0.182 1.182 27 H -0.244 1.244 28 C 0.001 3.999 29 C -0.125 4.125 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.248 0.752 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.066 0.934 47 H 0.103 0.897 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.070 0.930 51 H 0.058 0.942 52 H 0.066 0.934 53 H 0.070 0.930 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.844 -25.708 12.218 28.873 hybrid contribution 0.020 1.737 0.688 1.869 sum 4.864 -23.971 12.906 27.655 Atomic orbital electron populations 1.21724 0.94852 1.02368 1.01746 1.21366 0.95936 0.95250 1.02147 1.22290 0.87146 0.98376 1.00123 1.65050 1.08597 1.20804 1.28845 1.23257 0.95755 1.01977 0.88649 1.22300 0.96061 0.97554 0.99701 1.22328 0.92283 1.01270 0.99182 1.22657 0.99757 0.93113 0.91408 0.89272 1.20807 0.76343 0.80602 0.91219 1.90666 1.47027 1.48387 1.58137 1.45330 1.62150 1.19452 1.07181 1.21617 1.02317 0.95320 0.82793 0.86263 1.23657 0.91733 1.01437 1.03305 1.21770 1.01719 0.90818 0.97853 1.21510 0.98333 0.97620 0.95352 1.21027 0.98619 0.88592 0.89416 1.44420 1.60346 1.16337 1.13281 1.18867 1.05334 0.86837 1.26856 0.93635 1.25991 1.01605 0.95212 1.00542 1.69983 1.36528 1.09111 1.45062 0.85808 0.82156 0.75308 0.78626 1.19764 1.18175 1.24351 1.21444 0.94520 0.95844 0.88117 1.21516 1.00902 0.94049 0.96071 0.91529 0.92031 0.93618 0.92913 0.91019 0.93600 0.93099 0.89344 0.92547 0.90728 0.88794 0.91317 0.87998 0.75186 0.87066 0.87348 0.93440 0.89715 0.92983 0.94190 0.93009 0.94216 0.93401 0.93023 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 71.98 0.71 -1.49 16 2 C -0.11 -1.88 6.05 30.59 0.19 -1.69 16 3 C 0.05 0.96 4.62 86.31 0.40 1.36 16 4 N -0.51 -9.93 4.62 -861.02 -3.98 -13.91 16 5 C 0.03 0.40 5.91 86.45 0.51 0.91 16 6 C -0.12 -1.22 7.00 31.49 0.22 -1.00 16 7 C -0.11 -1.41 6.47 31.49 0.20 -1.20 16 8 C 0.04 0.77 2.67 44.32 0.12 0.89 16 9 H 0.09 1.41 8.00 -2.39 -0.02 1.39 16 10 C 0.52 12.96 6.84 87.66 0.60 13.56 16 11 O -0.56 -18.90 15.33 -3.01 -0.05 -18.95 16 12 N -0.69 -14.99 5.28 -442.79 -2.34 -17.32 16 13 C 0.09 2.13 6.14 44.94 0.28 2.40 16 14 H 0.12 3.36 7.40 -2.39 -0.02 3.34 16 15 C -0.16 -3.61 9.87 30.55 0.30 -3.31 16 16 C -0.12 -3.33 1.94 -52.17 -0.10 -3.43 16 17 C -0.09 -2.77 5.83 30.77 0.18 -2.59 16 18 C 0.15 5.60 6.51 86.43 0.56 6.17 16 19 N -0.62 -28.62 2.70 -698.06 -1.89 -30.51 16 20 C -0.25 -14.17 10.00 84.03 0.84 -13.33 16 21 H 0.05 2.87 8.06 -2.91 -0.02 2.84 16 22 C -0.04 -2.29 5.24 84.86 0.44 -1.84 16 23 N -0.96 -60.59 13.97 21.65 0.30 -60.29 16 24 Si 0.95 45.78 24.38 68.60 1.67 47.46 16 25 H -0.27 -12.07 6.69 99.48 0.67 -11.41 16 26 H -0.26 -11.72 6.56 99.48 0.65 -11.07 16 27 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 28 C 0.13 5.02 4.24 86.58 0.37 5.39 16 29 C -0.09 -2.67 5.39 30.93 0.17 -2.50 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.07 1.02 7.47 -2.39 -0.02 1.01 16 35 H 0.05 0.76 7.77 -2.39 -0.02 0.74 16 36 H 0.05 1.28 7.29 -2.39 -0.02 1.26 16 37 H 0.09 1.07 7.85 -2.38 -0.02 1.06 16 38 H 0.06 0.62 7.76 -2.38 -0.02 0.60 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 1.01 7.85 -2.39 -0.02 0.99 16 42 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.41 7.00 7.10 -92.71 -0.66 6.34 16 44 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.08 2.17 8.11 -2.38 -0.02 2.15 16 48 H 0.05 2.04 7.92 -2.39 -0.02 2.03 16 49 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 51 H 0.04 1.50 7.21 -2.39 -0.02 1.49 16 52 H 0.05 2.14 4.30 -2.39 -0.01 2.13 16 53 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 54 H 0.08 1.97 6.75 -2.39 -0.02 1.95 16 Total: -1.00 -73.51 408.11 -0.17 -73.68 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.11 Total: 21.54 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 5.99 Total: -1.70 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -7.90 Total: -122.02 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.05 Total: -18.95 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.46 kcal Total: -73.51 -0.17 -73.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016651246.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.408 kcal (2) G-P(sol) polarization free energy of solvation -73.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds