Wall clock time and date at job start Tue Mar 31 2020 19:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.46787 * 2 1 4 4 N 1.46904 * 109.46865 * 119.99936 * 2 1 3 5 5 C 1.47440 * 110.99965 * 295.12542 * 4 2 1 6 6 C 1.54321 * 107.37293 * 236.66490 * 5 4 2 7 7 C 1.55396 * 102.89784 * 337.89930 * 6 5 4 8 8 C 1.47850 * 110.99786 * 174.28682 * 4 2 1 9 9 H 1.09005 * 110.37244 * 27.52936 * 8 4 2 10 10 C 1.50694 * 110.37301 * 265.19460 * 8 4 2 11 11 O 1.21285 * 120.00269 * 359.97438 * 10 8 4 12 12 N 1.34774 * 120.00082 * 179.97438 * 10 8 4 13 13 C 1.46505 * 119.99977 * 179.97438 * 12 10 8 14 14 C 1.53147 * 109.43446 * 120.79946 * 13 12 10 15 15 C 1.53696 * 108.87947 * 66.16860 * 14 13 12 16 16 H 1.08993 * 112.10349 * 187.61554 * 15 14 13 17 17 C 1.54605 * 107.83428 * 311.60237 * 15 14 13 18 18 C 1.55894 * 104.00001 * 88.87903 * 17 15 14 19 19 C 1.54610 * 104.89895 * 359.97438 * 18 17 15 20 20 H 1.08998 * 112.18961 * 146.82051 * 19 18 17 21 21 C 1.53156 * 109.43360 * 241.01766 * 13 12 10 22 22 N 1.48293 * 104.25905 * 25.15718 * 19 18 17 23 23 C 1.36933 * 128.20844 * 138.38083 * 22 19 18 24 24 H 1.08003 * 120.00349 * 194.80012 * 23 22 19 25 25 C 1.38812 * 120.00310 * 14.80430 * 23 22 19 26 26 N 1.31625 * 119.99703 * 10.26188 * 25 23 22 27 27 Si 1.86799 * 120.00507 * 190.26553 * 25 23 22 28 28 H 1.48495 * 109.47147 * 84.98392 * 27 25 23 29 29 H 1.48496 * 109.47081 * 204.98859 * 27 25 23 30 30 H 1.48503 * 109.46672 * 324.98584 * 27 25 23 31 31 H 1.08993 * 109.47530 * 299.99699 * 1 2 3 32 32 H 1.08993 * 109.47360 * 60.00433 * 1 2 3 33 33 H 1.09005 * 109.47334 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47022 * 240.00219 * 2 1 3 35 35 H 1.09001 * 109.47441 * 59.99974 * 3 2 1 36 36 H 1.09005 * 109.47205 * 179.97438 * 3 2 1 37 37 H 1.09002 * 109.47573 * 299.99665 * 3 2 1 38 38 H 1.08999 * 109.89418 * 356.15063 * 5 4 2 39 39 H 1.09003 * 109.88847 * 117.17776 * 5 4 2 40 40 H 1.09003 * 110.70551 * 96.18007 * 6 5 4 41 41 H 1.08998 * 110.70784 * 219.41912 * 6 5 4 42 42 H 1.09005 * 110.87029 * 277.39063 * 7 6 5 43 43 H 1.09001 * 111.05999 * 153.65156 * 7 6 5 44 44 H 0.97001 * 120.00250 * 359.97438 * 12 10 8 45 45 H 1.08992 * 109.43380 * 0.88480 * 13 12 10 46 46 H 1.09001 * 109.57307 * 185.99247 * 14 13 12 47 47 H 1.09008 * 109.56822 * 306.35371 * 14 13 12 48 48 H 1.09006 * 110.37771 * 207.48571 * 17 15 14 49 49 H 1.08998 * 110.38312 * 329.84192 * 17 15 14 50 50 H 1.08997 * 110.29620 * 241.11377 * 18 17 15 51 51 H 1.08995 * 110.41893 * 118.89683 * 18 17 15 52 52 H 1.08996 * 109.56465 * 53.64791 * 21 13 12 53 53 H 1.08999 * 109.56421 * 174.00749 * 21 13 12 54 54 H 0.97007 * 119.99806 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.6447 0.0403 2.4227 6 6 2.9458 0.3444 3.1948 7 6 3.9315 -0.7254 2.6481 8 6 3.4911 -0.8324 1.1669 9 1 3.9358 -0.0288 0.5798 10 6 3.8782 -2.1739 0.6000 11 8 3.0190 -2.9552 0.2502 12 7 5.1791 -2.5055 0.4816 13 6 5.5553 -3.8100 -0.0690 14 6 6.4213 -3.6062 -1.3157 15 6 7.7526 -2.9626 -0.8967 16 1 8.3561 -2.6720 -1.7565 17 6 7.4296 -1.7624 0.0228 18 6 7.3814 -2.3841 1.4516 19 6 7.6785 -3.8867 1.2415 20 1 8.2275 -4.3187 2.0782 21 6 6.3416 -4.5992 0.9820 22 7 8.4544 -3.9325 -0.0215 23 6 9.5573 -4.6907 -0.3109 24 1 10.1625 -4.4562 -1.1742 25 6 9.8977 -5.7608 0.5051 26 7 9.0600 -6.1734 1.4328 27 14 11.5444 -6.6152 0.2869 28 1 12.5865 -5.8842 1.0516 29 1 11.4489 -8.0096 0.7886 30 1 11.9068 -6.6310 -1.1531 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.1442 0.9718 2.1583 39 1 0.9848 -0.5740 3.0354 40 1 3.3030 1.3488 2.9675 41 1 2.7953 0.2211 4.2673 42 1 3.7985 -1.6760 3.1646 43 1 4.9634 -0.3827 2.7249 44 1 5.8663 -1.8806 0.7610 45 1 4.6556 -4.3629 -0.3387 46 1 6.6140 -4.5696 -1.7878 47 1 5.9037 -2.9512 -2.0166 48 1 8.2176 -1.0119 -0.0418 49 1 6.4669 -1.3272 -0.2452 50 1 6.3920 -2.2503 1.8889 51 1 8.1415 -1.9322 2.0888 52 1 5.7676 -4.6470 1.9073 53 1 6.5306 -5.6079 0.6149 54 1 9.2980 -6.9210 2.0033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021254003.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:34 Heat of formation + Delta-G solvation = 54.692011 kcal Electronic energy + Delta-G solvation = -32044.374313 eV Core-core repulsion = 28211.958391 eV Total energy + Delta-G solvation = -3832.415921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.53510 -40.84393 -38.93397 -35.79694 -35.19303 -33.85801 -32.78493 -31.94002 -31.00561 -30.32570 -29.70255 -28.04489 -26.48271 -24.87978 -24.46157 -23.01491 -22.47900 -21.46133 -21.22115 -20.90002 -20.02199 -18.92278 -18.31852 -17.56063 -16.77830 -16.48879 -16.10577 -15.98654 -15.50442 -15.15753 -14.92804 -14.74128 -14.59001 -14.50348 -14.31683 -14.11407 -14.01242 -13.74215 -13.60034 -13.25101 -13.20840 -13.09369 -12.82221 -12.75360 -12.63992 -12.53772 -12.41434 -12.32194 -12.13801 -12.05303 -11.97544 -11.87478 -11.74225 -11.60480 -11.46085 -11.36180 -11.16634 -11.02414 -10.57815 -10.51374 -9.56510 -9.12351 -8.74766 -7.81784 -5.16108 1.48878 1.49138 1.56964 1.80677 2.26056 2.52125 3.13272 3.35786 3.56146 3.60689 3.69451 3.89893 3.93775 3.97999 4.08729 4.12666 4.19470 4.20520 4.25795 4.28320 4.33612 4.43511 4.44145 4.50331 4.60235 4.70136 4.72561 4.75468 4.81855 4.84914 4.90190 4.95896 4.96314 5.00867 5.02276 5.09259 5.11557 5.13135 5.14585 5.27459 5.30295 5.31538 5.36642 5.42866 5.44663 5.56520 5.62162 5.81638 5.87144 6.02334 6.24777 6.28704 6.76400 7.11322 7.47194 7.78197 8.58017 9.29070 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.025796 B = 0.003026 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.177972 B = 9249.744871 C = 9427.801399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.069 3.931 3 C -0.182 4.182 4 N -0.525 5.525 5 C 0.036 3.964 6 C -0.129 4.129 7 C -0.123 4.123 8 C 0.056 3.944 9 H 0.101 0.899 10 C 0.500 3.500 11 O -0.578 6.578 12 N -0.727 5.727 13 C 0.156 3.844 14 C -0.130 4.130 15 C 0.141 3.859 16 H 0.073 0.927 17 C -0.147 4.147 18 C -0.162 4.162 19 C 0.178 3.822 20 H 0.070 0.930 21 C -0.112 4.112 22 N -0.604 5.604 23 C -0.231 4.231 24 H 0.076 0.924 25 C -0.058 4.058 26 N -0.935 5.935 27 Si 0.969 3.031 28 H -0.287 1.287 29 H -0.301 1.301 30 H -0.274 1.274 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.433 0.567 45 H 0.062 0.938 46 H 0.045 0.955 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.104 0.896 50 H 0.098 0.902 51 H 0.068 0.932 52 H 0.041 0.959 53 H 0.039 0.961 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.629 20.251 1.536 23.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.039 4.039 3 C -0.240 4.240 4 N -0.249 5.249 5 C -0.090 4.090 6 C -0.168 4.168 7 C -0.161 4.161 8 C -0.056 4.056 9 H 0.119 0.881 10 C 0.287 3.713 11 O -0.457 6.457 12 N -0.401 5.401 13 C 0.051 3.949 14 C -0.170 4.170 15 C 0.034 3.966 16 H 0.091 0.909 17 C -0.186 4.186 18 C -0.201 4.201 19 C 0.071 3.929 20 H 0.088 0.912 21 C -0.152 4.152 22 N -0.325 5.325 23 C -0.360 4.360 24 H 0.094 0.906 25 C -0.252 4.252 26 N -0.583 5.583 27 Si 0.799 3.201 28 H -0.214 1.214 29 H -0.228 1.228 30 H -0.199 1.199 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.294 0.706 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.090 0.910 48 H 0.100 0.900 49 H 0.122 0.878 50 H 0.116 0.884 51 H 0.087 0.913 52 H 0.059 0.941 53 H 0.058 0.942 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.269 19.048 1.354 23.253 hybrid contribution 1.435 -0.766 -0.144 1.633 sum -11.834 18.282 1.209 21.811 Atomic orbital electron populations 1.21760 0.93415 1.01569 1.02552 1.21816 0.96680 0.93080 0.92341 1.22485 1.01519 0.96427 1.03560 1.63195 1.09112 1.49612 1.03002 1.22948 0.98090 0.97723 0.90276 1.22822 0.93838 0.98950 1.01143 1.22799 1.01343 1.00433 0.91569 1.22522 0.90617 0.93499 0.98968 0.88136 1.21342 0.82879 0.89537 0.77552 1.90619 1.51226 1.53308 1.50564 1.48813 1.08077 1.19271 1.63983 1.20645 0.96245 0.84561 0.93448 1.22401 0.97495 1.00825 0.96284 1.21757 0.91149 0.89975 0.93726 0.90925 1.23422 1.02595 0.97947 0.94610 1.23592 1.02005 0.97444 0.97053 1.21349 0.89606 0.91764 0.90208 0.91213 1.22156 0.97367 0.98860 0.96850 1.45369 1.30291 1.46306 1.10569 1.19275 1.00316 1.06276 1.10165 0.90586 1.25523 1.01395 0.98255 1.00052 1.70074 1.35554 1.28425 1.24232 0.85237 0.80251 0.76981 0.77661 1.21379 1.22753 1.19918 0.91529 0.90991 0.93936 0.92569 0.90749 0.92315 0.91009 0.90064 0.91502 0.89163 0.89254 0.91995 0.87971 0.70638 0.92004 0.93571 0.91034 0.89996 0.87817 0.88411 0.91321 0.94075 0.94189 0.94600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.14 71.98 0.66 -1.70 16 2 C 0.07 1.37 2.90 44.91 0.13 1.50 16 3 C -0.18 -2.39 8.63 71.98 0.62 -1.77 16 4 N -0.52 -11.87 4.34 -839.95 -3.65 -15.52 16 5 C 0.04 0.60 5.58 86.65 0.48 1.08 16 6 C -0.13 -1.67 6.97 31.87 0.22 -1.44 16 7 C -0.12 -2.20 6.47 32.07 0.21 -2.00 16 8 C 0.06 1.24 2.61 44.63 0.12 1.35 16 9 H 0.10 1.80 5.90 -2.38 -0.01 1.79 16 10 C 0.50 15.80 7.19 87.66 0.63 16.43 16 11 O -0.58 -23.80 15.81 -3.05 -0.05 -23.85 16 12 N -0.73 -22.21 2.75 -442.06 -1.22 -23.43 16 13 C 0.16 5.97 3.15 45.09 0.14 6.11 16 14 C -0.13 -4.80 5.48 30.88 0.17 -4.63 16 15 C 0.14 5.27 4.28 45.43 0.19 5.46 16 16 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 17 C -0.15 -4.21 5.83 32.14 0.19 -4.02 16 18 C -0.16 -5.22 5.79 32.14 0.19 -5.04 16 19 C 0.18 7.91 3.13 45.43 0.14 8.05 16 20 H 0.07 3.69 6.36 -2.39 -0.02 3.67 16 21 C -0.11 -4.95 5.41 30.88 0.17 -4.78 16 22 N -0.60 -28.65 2.82 -637.24 -1.80 -30.45 16 23 C -0.23 -12.36 10.37 84.03 0.87 -11.48 16 24 H 0.08 3.94 7.85 -2.91 -0.02 3.92 16 25 C -0.06 -3.19 5.41 84.86 0.46 -2.73 16 26 N -0.94 -54.05 10.63 21.65 0.23 -53.82 16 27 Si 0.97 44.95 29.57 68.60 2.03 46.98 16 28 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 29 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 30 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 31 H 0.07 0.96 6.81 -2.39 -0.02 0.95 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.04 0.92 8.14 -2.38 -0.02 0.91 16 34 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 35 H 0.07 0.79 6.06 -2.39 -0.01 0.78 16 36 H 0.06 0.76 6.28 -2.38 -0.01 0.74 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 1.01 4.76 -2.39 -0.01 1.00 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 1.39 8.05 -2.38 -0.02 1.37 16 43 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.43 11.30 1.91 -114.39 -0.22 11.08 16 45 H 0.06 2.63 6.90 -2.39 -0.02 2.61 16 46 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 48 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 49 H 0.10 2.48 5.33 -2.39 -0.01 2.47 16 50 H 0.10 2.77 5.28 -2.39 -0.01 2.75 16 51 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 52 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 53 H 0.04 2.09 8.01 -2.39 -0.02 2.07 16 54 H 0.24 14.00 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -69.34 387.37 1.81 -67.54 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.67 Total: 32.16 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 5.59 Total: 0.39 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -6.43 Total: -123.22 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.85 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -69.34 1.81 -67.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021254003.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.229 kcal (2) G-P(sol) polarization free energy of solvation -69.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds