Wall clock time and date at job start Tue Mar 31 2020 19:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47386 * 2 1 4 4 C 1.50705 * 109.46754 * 120.00331 * 2 1 3 5 5 O 1.21281 * 120.00215 * 338.53202 * 4 2 1 6 6 N 1.34782 * 119.99915 * 158.53163 * 4 2 1 7 7 C 1.46902 * 125.61577 * 355.10113 * 6 4 2 8 8 C 1.54209 * 107.63358 * 178.51950 * 7 6 4 9 9 H 1.08998 * 114.47499 * 214.85122 * 8 7 6 10 10 C 1.54839 * 108.05094 * 87.00209 * 8 7 6 11 11 C 1.54133 * 104.63235 * 214.54815 * 10 8 7 12 12 C 1.53866 * 106.49656 * 24.49666 * 11 10 8 13 13 H 1.09000 * 110.09007 * 238.86768 * 12 11 10 14 14 N 1.46496 * 109.92220 * 117.65324 * 12 11 10 15 15 C 1.36931 * 120.00274 * 87.43754 * 14 12 11 16 16 H 1.07999 * 119.99906 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00112 * 180.02562 * 15 14 12 18 18 N 1.31621 * 119.99920 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00053 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47017 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.46883 * 299.99520 * 19 17 15 22 22 H 1.48497 * 109.46929 * 59.99753 * 19 17 15 23 23 C 1.53714 * 107.02711 * 358.30650 * 12 11 10 24 24 H 1.09004 * 112.96388 * 214.87340 * 23 12 11 25 25 C 1.47333 * 125.61661 * 175.14009 * 6 4 2 26 26 N 1.46901 * 109.47015 * 239.99995 * 2 1 3 27 27 C 1.48532 * 110.99924 * 308.16430 * 26 2 1 28 28 C 1.54940 * 103.22670 * 159.72359 * 27 26 2 29 29 C 1.54599 * 102.91813 * 322.58296 * 28 27 26 30 30 C 1.47897 * 110.99938 * 65.55994 * 26 2 1 31 31 H 1.09001 * 109.46674 * 307.24053 * 1 2 3 32 32 H 1.09006 * 109.46705 * 67.23896 * 1 2 3 33 33 H 1.09000 * 109.47449 * 187.23691 * 1 2 3 34 34 H 1.08998 * 109.47019 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47226 * 299.99712 * 3 2 1 36 36 H 1.08998 * 109.46852 * 60.00184 * 3 2 1 37 37 H 1.08997 * 109.82603 * 58.98712 * 7 6 4 38 38 H 1.09006 * 109.82482 * 298.04143 * 7 6 4 39 39 H 1.09005 * 110.39903 * 333.33161 * 10 8 7 40 40 H 1.08998 * 110.40571 * 95.63453 * 10 8 7 41 41 H 1.09008 * 110.04810 * 265.23532 * 11 10 8 42 42 H 1.08996 * 110.05072 * 143.76032 * 11 10 8 43 43 H 0.97006 * 119.99493 * 267.44003 * 14 12 11 44 44 H 0.97006 * 119.99731 * 179.97438 * 18 17 15 45 45 H 1.09003 * 110.29974 * 84.94795 * 25 6 4 46 46 H 1.09005 * 110.30230 * 322.80601 * 25 6 4 47 47 H 1.09006 * 110.67079 * 278.15166 * 27 26 2 48 48 H 1.09002 * 110.67155 * 41.29003 * 27 26 2 49 49 H 1.09001 * 110.72185 * 204.22971 * 28 27 26 50 50 H 1.08998 * 110.72456 * 80.94261 * 28 27 26 51 51 H 1.08997 * 110.31081 * 263.03901 * 29 28 27 52 52 H 1.09003 * 110.30547 * 140.87715 * 29 28 27 53 53 H 1.09000 * 109.91786 * 333.50728 * 30 26 2 54 54 H 1.09003 * 109.91327 * 94.60922 * 30 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 1.3129 -0.8264 2.2000 6 7 3.2811 -1.2172 1.2536 7 6 4.2170 -1.2376 0.1215 8 6 5.5321 -1.8749 0.6141 9 1 6.4328 -1.4545 0.1670 10 6 5.4124 -3.4099 0.4495 11 6 6.1942 -3.9916 1.6437 12 6 6.1899 -2.9096 2.7376 13 1 7.2124 -2.6333 2.9950 14 7 5.4925 -3.4049 3.9269 15 6 6.1798 -4.1060 4.8813 16 1 7.2362 -4.2936 4.7575 17 6 5.5189 -4.5758 6.0080 18 7 4.2316 -4.3468 6.1591 19 14 6.4567 -5.5318 7.3104 20 1 5.5294 -5.9191 8.4038 21 1 7.0417 -6.7537 6.7021 22 1 7.5442 -4.6831 7.8601 23 6 5.4470 -1.6923 2.1637 24 1 5.8564 -0.7428 2.5087 25 6 3.9319 -1.8424 2.4181 26 7 2.0197 -0.6925 -1.1995 27 6 1.3893 -2.0304 -1.3363 28 6 1.5870 -2.3637 -2.8364 29 6 1.3871 -0.9936 -3.5241 30 6 1.6577 0.0511 -2.4256 31 1 -0.3633 0.6219 0.8182 32 1 -0.3633 0.3976 -0.9477 33 1 -0.3634 -1.0195 0.1295 34 1 3.1301 1.4424 0.0005 35 1 1.6769 1.9563 -0.8900 36 1 1.6768 1.9562 0.8900 37 1 4.4050 -0.2201 -0.2212 38 1 3.8004 -1.8317 -0.6919 39 1 4.3673 -3.7165 0.4939 40 1 5.8611 -3.7273 -0.4918 41 1 7.2181 -4.2177 1.3456 42 1 5.7029 -4.8937 2.0083 43 1 4.5437 -3.2361 4.0382 44 1 3.7696 -4.6754 6.9463 45 1 3.6618 -2.8965 2.4816 46 1 3.6489 -1.3230 3.3337 47 1 1.8991 -2.7620 -0.7093 48 1 0.3286 -1.9831 -1.0893 49 1 0.8366 -3.0783 -3.1749 50 1 2.5924 -2.7435 -3.0179 51 1 0.3653 -0.9002 -3.8916 52 1 2.0968 -0.8743 -4.3429 53 1 0.7609 0.6447 -2.2488 54 1 2.4809 0.7013 -2.7221 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026331444.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:14 Heat of formation + Delta-G solvation = -18.033632 kcal Electronic energy + Delta-G solvation = -31924.364658 eV Core-core repulsion = 28088.795116 eV Total energy + Delta-G solvation = -3835.569542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.09947 -40.64299 -39.17219 -36.60767 -35.29445 -34.85751 -32.70119 -30.69960 -30.23989 -29.82117 -29.73990 -28.19468 -27.01819 -25.59313 -24.98666 -23.54896 -22.05821 -21.17202 -20.89964 -20.24176 -19.75159 -19.13195 -18.37165 -17.34640 -17.09021 -16.68920 -16.54648 -16.15422 -15.94384 -15.56880 -15.12790 -15.04745 -14.78281 -14.40512 -14.23107 -14.13476 -13.93359 -13.69086 -13.51879 -13.26265 -13.25545 -13.02651 -12.98885 -12.95927 -12.69206 -12.56885 -12.52639 -12.38550 -12.21140 -12.19616 -12.09562 -11.89165 -11.70750 -11.56840 -11.44282 -11.41793 -11.27490 -11.25096 -10.90606 -10.73326 -9.55713 -9.33296 -8.98442 -7.93270 -5.22163 1.44483 1.48289 1.54362 1.54792 2.03424 2.55941 2.85748 3.33027 3.40558 3.49413 3.63524 3.73806 3.81159 3.86502 3.94649 4.02693 4.18802 4.23759 4.28359 4.34467 4.39191 4.45463 4.51919 4.57366 4.58882 4.61879 4.69553 4.72306 4.73699 4.74643 4.82096 4.84754 4.91605 4.97010 5.04703 5.05466 5.10370 5.13661 5.19008 5.21206 5.25312 5.28507 5.29170 5.34758 5.39449 5.47910 5.49723 5.58638 5.67170 5.84072 5.95424 6.28513 6.64493 7.16156 7.33488 8.12939 8.33273 9.30214 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.003249 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.293643 B = 8616.451379 C = 9210.699430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 C -0.133 4.133 4 C 0.527 3.473 5 O -0.600 6.600 6 N -0.598 5.598 7 C 0.126 3.874 8 C -0.089 4.089 9 H 0.139 0.861 10 C -0.104 4.104 11 C -0.138 4.138 12 C 0.171 3.829 13 H 0.054 0.946 14 N -0.741 5.741 15 C -0.237 4.237 16 H 0.079 0.921 17 C -0.082 4.082 18 N -0.975 5.975 19 Si 0.974 3.026 20 H -0.300 1.300 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.100 4.100 24 H 0.094 0.906 25 C 0.126 3.874 26 N -0.496 5.496 27 C 0.016 3.984 28 C -0.115 4.115 29 C -0.123 4.123 30 C 0.029 3.971 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.372 0.628 44 H 0.248 0.752 45 H 0.044 0.956 46 H 0.033 0.967 47 H 0.056 0.944 48 H 0.048 0.952 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.072 0.928 52 H 0.087 0.913 53 H 0.058 0.942 54 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.242 11.761 -27.111 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.002 3.998 3 C -0.191 4.191 4 C 0.317 3.683 5 O -0.481 6.481 6 N -0.329 5.329 7 C 0.005 3.995 8 C -0.107 4.107 9 H 0.157 0.843 10 C -0.141 4.141 11 C -0.178 4.178 12 C 0.063 3.937 13 H 0.072 0.928 14 N -0.382 5.382 15 C -0.369 4.369 16 H 0.097 0.903 17 C -0.273 4.273 18 N -0.626 5.626 19 Si 0.803 3.197 20 H -0.227 1.227 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.120 4.120 24 H 0.112 0.888 25 C 0.003 3.997 26 N -0.221 5.221 27 C -0.112 4.112 28 C -0.153 4.153 29 C -0.161 4.161 30 C -0.098 4.098 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.206 0.794 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.075 0.925 48 H 0.066 0.934 49 H 0.094 0.906 50 H 0.097 0.903 51 H 0.091 0.909 52 H 0.105 0.895 53 H 0.076 0.924 54 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.967 11.615 -26.451 28.955 hybrid contribution -1.270 -0.947 2.067 2.604 sum -3.237 10.667 -24.384 26.812 Atomic orbital electron populations 1.22243 0.94232 1.02188 1.03446 1.21216 0.94444 0.95878 0.88260 1.21858 1.02561 0.90974 1.03663 1.20869 0.80024 0.77981 0.89476 1.90706 1.56968 1.60960 1.39479 1.48512 1.13796 1.57098 1.13481 1.22268 0.87034 1.02487 0.87720 1.23350 0.98925 0.95849 0.92622 0.84315 1.22321 0.99056 0.94515 0.98224 1.22775 1.00259 0.98602 0.96214 1.21013 0.94947 0.91425 0.86350 0.92805 1.42970 1.09182 1.65160 1.20935 1.19668 0.93550 1.25208 0.98490 0.90286 1.25603 0.96687 1.03739 1.01307 1.69860 1.09661 1.53026 1.30075 0.85201 0.77199 0.78779 0.78541 1.22671 1.20247 1.20213 1.23100 0.92313 0.98988 0.97578 0.88799 1.21736 0.93334 0.96210 0.88419 1.65219 1.53378 1.02467 1.01035 1.23420 0.97809 0.91182 0.98743 1.22430 1.02854 0.97945 0.92066 1.22374 1.02634 0.93210 0.97848 1.23078 1.01276 0.96923 0.88483 0.92305 0.88721 0.93503 0.90809 0.88277 0.92737 0.89692 0.88391 0.94018 0.88961 0.90970 0.94779 0.79384 0.94319 0.93828 0.94862 0.92535 0.93412 0.90567 0.90304 0.90889 0.89454 0.92396 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 6.94 71.98 0.50 -3.04 16 2 C 0.10 2.11 0.39 2.78 0.00 2.11 16 3 C -0.13 -2.29 8.24 71.98 0.59 -1.70 16 4 C 0.53 17.76 6.11 87.66 0.54 18.29 16 5 O -0.60 -26.84 16.48 -3.03 -0.05 -26.89 16 6 N -0.60 -18.96 3.32 -813.61 -2.70 -21.66 16 7 C 0.13 2.79 4.67 86.71 0.40 3.20 16 8 C -0.09 -2.01 4.25 -8.62 -0.04 -2.04 16 9 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 10 C -0.10 -2.67 5.58 31.61 0.18 -2.49 16 11 C -0.14 -4.69 6.56 31.27 0.21 -4.48 16 12 C 0.17 6.71 3.24 45.52 0.15 6.86 16 13 H 0.05 2.09 8.08 -2.39 -0.02 2.07 16 14 N -0.74 -38.74 4.79 -320.43 -1.54 -40.28 16 15 C -0.24 -13.56 9.95 84.04 0.84 -12.72 16 16 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 17 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 18 N -0.98 -63.43 13.06 21.65 0.28 -63.15 16 19 Si 0.97 47.95 29.55 68.60 2.03 49.98 16 20 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 C -0.10 -3.26 4.03 -8.96 -0.04 -3.29 16 24 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 25 C 0.13 5.01 4.39 86.68 0.38 5.39 16 26 N -0.50 -8.32 2.34 -837.86 -1.96 -10.28 16 27 C 0.02 0.31 5.07 86.65 0.44 0.75 16 28 C -0.11 -1.43 7.06 31.80 0.22 -1.21 16 29 C -0.12 -1.07 6.93 31.47 0.22 -0.85 16 30 C 0.03 0.30 5.09 86.45 0.44 0.74 16 31 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 32 H 0.09 1.43 6.10 -2.38 -0.01 1.41 16 33 H 0.05 1.20 6.37 -2.39 -0.02 1.18 16 34 H 0.07 1.23 7.04 -2.39 -0.02 1.21 16 35 H 0.10 1.10 6.73 -2.39 -0.02 1.08 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.54 7.02 -2.39 -0.02 1.52 16 38 H 0.10 2.02 5.23 -2.38 -0.01 2.01 16 39 H 0.04 1.25 7.27 -2.38 -0.02 1.24 16 40 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.03 1.41 7.91 -2.39 -0.02 1.39 16 43 H 0.37 21.45 5.33 -92.70 -0.49 20.96 16 44 H 0.25 15.77 8.31 -92.70 -0.77 15.00 16 45 H 0.04 2.03 6.28 -2.39 -0.01 2.02 16 46 H 0.03 1.56 8.08 -2.38 -0.02 1.54 16 47 H 0.06 1.39 7.53 -2.38 -0.02 1.37 16 48 H 0.05 0.99 5.52 -2.39 -0.01 0.98 16 49 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 50 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 52 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 53 H 0.06 0.56 5.29 -2.39 -0.01 0.55 16 54 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -77.26 390.31 1.95 -75.31 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: 0.39 Total: 35.89 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 5.50 Total: 1.08 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -5.92 Total: -135.37 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.05 Total: -26.89 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -77.26 1.95 -75.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026331444.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.276 kcal (2) G-P(sol) polarization free energy of solvation -77.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds