Wall clock time and date at job start Tue Mar 31 2020 19:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47353 * 2 1 4 4 N 1.46908 * 109.46957 * 119.99776 * 2 1 3 5 5 C 1.47841 * 110.99999 * 321.77429 * 4 2 1 6 6 C 1.54905 * 104.79386 * 146.36293 * 5 4 2 7 7 C 1.55394 * 101.74253 * 323.01635 * 6 5 4 8 8 C 1.47450 * 110.99759 * 82.61637 * 4 2 1 9 9 H 1.09005 * 109.88333 * 117.17072 * 8 4 2 10 10 C 1.53003 * 109.88791 * 356.15050 * 8 4 2 11 11 C 1.50697 * 109.47412 * 78.38101 * 10 8 4 12 12 O 1.21286 * 119.99822 * 5.13120 * 11 10 8 13 13 N 1.34774 * 120.00114 * 185.13248 * 11 10 8 14 14 C 1.47161 * 120.71239 * 179.97438 * 13 11 10 15 15 C 1.53884 * 108.03069 * 132.75214 * 14 13 11 16 16 H 1.08998 * 112.57892 * 182.22662 * 15 14 13 17 17 C 1.54132 * 107.71372 * 306.32789 * 15 14 13 18 18 C 1.54279 * 104.89061 * 89.40896 * 17 15 14 19 19 C 1.54551 * 104.84727 * 359.80853 * 18 17 15 20 20 H 1.09010 * 112.17884 * 146.41081 * 19 18 17 21 21 C 1.47981 * 120.64045 * 359.70021 * 13 11 10 22 22 N 1.48300 * 104.35736 * 24.70584 * 19 18 17 23 23 C 1.36936 * 128.07838 * 139.08059 * 22 19 18 24 24 H 1.08000 * 120.00254 * 344.07051 * 23 22 19 25 25 C 1.38820 * 120.00115 * 164.07200 * 23 22 19 26 26 N 1.31617 * 119.99644 * 351.09667 * 25 23 22 27 27 Si 1.86793 * 120.00308 * 171.09671 * 25 23 22 28 28 H 1.48491 * 109.47521 * 179.97438 * 27 25 23 29 29 H 1.48502 * 109.47149 * 300.00291 * 27 25 23 30 30 H 1.48508 * 109.46801 * 59.99759 * 27 25 23 31 31 H 1.09007 * 109.47090 * 319.29948 * 1 2 3 32 32 H 1.08995 * 109.47086 * 79.29634 * 1 2 3 33 33 H 1.08998 * 109.47689 * 199.30200 * 1 2 3 34 34 H 1.08997 * 109.47386 * 239.99843 * 2 1 3 35 35 H 1.08994 * 109.47296 * 184.68797 * 3 2 1 36 36 H 1.08998 * 109.46719 * 304.68847 * 3 2 1 37 37 H 1.09003 * 109.46652 * 64.68508 * 3 2 1 38 38 H 1.09003 * 110.37494 * 265.19067 * 5 4 2 39 39 H 1.09003 * 110.37584 * 27.42510 * 5 4 2 40 40 H 1.08996 * 110.99274 * 81.02422 * 6 5 4 41 41 H 1.09008 * 110.99023 * 204.80032 * 6 5 4 42 42 H 1.09004 * 110.68172 * 277.17751 * 7 6 5 43 43 H 1.09003 * 110.84530 * 153.86433 * 7 6 5 44 44 H 1.09002 * 109.47086 * 318.37496 * 10 8 4 45 45 H 1.09001 * 109.46851 * 198.38249 * 10 8 4 46 46 H 1.09005 * 109.74767 * 13.12438 * 14 13 11 47 47 H 1.08996 * 109.79198 * 252.41174 * 14 13 11 48 48 H 1.09004 * 110.50371 * 330.47181 * 17 15 14 49 49 H 1.08994 * 110.27768 * 208.22991 * 17 15 14 50 50 H 1.09001 * 110.36784 * 240.96824 * 18 17 15 51 51 H 1.09001 * 110.36534 * 118.65480 * 18 17 15 52 52 H 1.09001 * 109.69063 * 107.67542 * 21 13 11 53 53 H 1.08998 * 109.93581 * 346.86733 * 21 13 11 54 54 H 0.97006 * 119.99870 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.1740 -0.3833 2.3721 6 6 1.1827 -1.6802 3.2191 7 6 1.1684 -2.7770 2.1183 8 6 2.0289 -2.1533 0.9995 9 1 3.0499 -2.5298 1.0633 10 6 1.4329 -2.4953 -0.3676 11 6 2.4601 -2.2426 -1.4409 12 8 3.5886 -1.9193 -1.1362 13 7 2.1246 -2.3760 -2.7394 14 6 3.1150 -2.1326 -3.8003 15 6 3.0392 -3.3003 -4.7997 16 1 3.7734 -3.2140 -5.6007 17 6 3.2006 -4.6102 -4.0036 18 6 1.7662 -5.0056 -3.5958 19 6 0.8673 -3.8927 -4.1804 20 1 -0.1052 -4.2718 -4.4948 21 6 0.7537 -2.7762 -3.1270 22 7 1.6495 -3.3465 -5.3158 23 6 1.1957 -2.9768 -6.5537 24 1 0.2216 -3.2997 -6.8904 25 6 1.9876 -2.1869 -7.3759 26 7 3.0926 -1.6486 -6.9054 27 14 1.4849 -1.8880 -9.1499 28 1 2.4911 -1.0178 -9.8097 29 1 1.4056 -3.1858 -9.8674 30 1 0.1577 -1.2224 -9.1829 31 1 -0.3634 0.7791 0.6702 32 1 -0.3633 0.1909 -1.0097 33 1 -0.3634 -0.9698 0.3397 34 1 1.8934 -0.5138 -0.8899 35 1 3.1267 1.4436 -0.0840 36 1 1.6097 1.9799 -0.8450 37 1 1.7468 1.9315 0.9290 38 1 1.6003 0.4437 2.9400 39 1 0.1593 -0.1419 2.0552 40 1 2.0883 -1.7468 3.8220 41 1 0.2932 -1.7431 3.8461 42 1 0.1522 -2.9573 1.7677 43 1 1.6206 -3.6991 2.4836 44 1 0.5573 -1.8717 -0.5484 45 1 1.1407 -3.5453 -0.3841 46 1 4.1141 -2.0829 -3.3672 47 1 2.8875 -1.1963 -4.3099 48 1 3.8149 -4.4456 -3.1182 49 1 3.6426 -5.3826 -4.6328 50 1 1.6751 -5.0356 -2.5100 51 1 1.5023 -5.9717 -4.0261 52 1 0.2276 -1.9211 -3.5514 53 1 0.2139 -3.1457 -2.2551 54 1 3.6458 -1.0963 -7.4798 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029338153.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:04 Heat of formation + Delta-G solvation = 14.033018 kcal Electronic energy + Delta-G solvation = -32419.823103 eV Core-core repulsion = 28585.644076 eV Total energy + Delta-G solvation = -3834.179028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.13415 -40.75346 -38.96451 -35.38264 -35.21528 -34.15399 -33.03942 -31.93534 -31.04726 -30.00148 -28.56049 -28.07728 -26.72801 -25.46782 -25.08891 -23.44525 -21.75343 -21.33762 -21.22001 -20.25171 -19.66438 -18.56741 -18.01888 -17.40099 -17.06554 -16.75947 -16.51709 -16.21709 -15.86665 -15.53906 -14.97804 -14.70138 -14.59022 -14.49339 -14.36320 -14.21668 -13.64962 -13.55689 -13.49582 -13.39945 -13.23277 -13.19589 -12.86347 -12.78064 -12.68417 -12.61459 -12.53364 -12.32822 -12.02393 -11.98603 -11.90365 -11.81028 -11.68172 -11.51961 -11.47288 -11.37964 -11.29767 -11.11873 -10.79133 -10.51882 -9.66730 -9.06226 -8.68580 -7.84676 -5.20835 1.48686 1.50377 1.56546 1.76391 2.15547 2.51487 3.05847 3.35217 3.47721 3.54187 3.76532 3.80300 3.98621 4.06105 4.08788 4.12381 4.15967 4.25234 4.30982 4.34411 4.35411 4.39365 4.42550 4.52624 4.65535 4.65608 4.68087 4.74557 4.76290 4.83081 4.85310 4.88170 4.99531 5.00426 5.04819 5.07991 5.11152 5.12337 5.16508 5.17306 5.21771 5.23858 5.31117 5.39107 5.41483 5.48563 5.54566 5.58582 5.86138 6.23092 6.23305 6.30077 6.68323 7.05875 7.34972 7.73865 8.53050 9.26864 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.018553 B = 0.003571 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.806459 B = 7839.061902 C = 8414.262754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.056 3.944 3 C -0.132 4.132 4 N -0.531 5.531 5 C 0.025 3.975 6 C -0.123 4.123 7 C -0.130 4.130 8 C 0.088 3.912 9 H 0.063 0.937 10 C -0.166 4.166 11 C 0.508 3.492 12 O -0.588 6.588 13 N -0.597 5.597 14 C 0.132 3.868 15 C 0.168 3.832 16 H 0.072 0.928 17 C -0.129 4.129 18 C -0.110 4.110 19 C 0.127 3.873 20 H 0.097 0.903 21 C 0.102 3.898 22 N -0.604 5.604 23 C -0.233 4.233 24 H 0.083 0.917 25 C -0.056 4.056 26 N -0.938 5.938 27 Si 0.971 3.029 28 H -0.302 1.302 29 H -0.281 1.281 30 H -0.277 1.277 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.049 0.951 47 H 0.035 0.965 48 H 0.052 0.948 49 H 0.052 0.948 50 H 0.078 0.922 51 H 0.070 0.930 52 H 0.048 0.952 53 H 0.113 0.887 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.989 -2.782 19.123 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.053 4.053 3 C -0.189 4.189 4 N -0.255 5.255 5 C -0.102 4.102 6 C -0.160 4.160 7 C -0.168 4.168 8 C -0.020 4.020 9 H 0.081 0.919 10 C -0.206 4.206 11 C 0.299 3.701 12 O -0.470 6.470 13 N -0.329 5.329 14 C 0.007 3.993 15 C 0.060 3.940 16 H 0.090 0.910 17 C -0.168 4.168 18 C -0.149 4.149 19 C 0.020 3.980 20 H 0.115 0.885 21 C -0.022 4.022 22 N -0.326 5.326 23 C -0.361 4.361 24 H 0.101 0.899 25 C -0.250 4.250 26 N -0.586 5.586 27 Si 0.800 3.200 28 H -0.228 1.228 29 H -0.207 1.207 30 H -0.203 1.203 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.096 0.904 51 H 0.088 0.912 52 H 0.067 0.933 53 H 0.131 0.869 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.855 -2.296 19.113 21.189 hybrid contribution -0.054 0.501 -1.868 1.935 sum -8.908 -1.794 17.245 19.493 Atomic orbital electron populations 1.22601 0.95494 1.02953 1.02729 1.22035 0.93983 0.95600 0.93658 1.21678 1.00232 0.95335 1.01704 1.63661 1.51436 1.06541 1.03908 1.23371 0.96951 0.98767 0.91096 1.22705 1.02982 0.93241 0.97116 1.22916 1.00333 0.99043 0.94548 1.22211 0.99325 0.88004 0.92489 0.91877 1.22751 0.98711 1.05877 0.93249 1.21028 0.89414 0.76168 0.83531 1.90684 1.23922 1.50106 1.82267 1.48435 1.12621 1.66785 1.05095 1.21805 0.90497 0.99295 0.87660 1.21549 0.88752 0.90972 0.92728 0.90985 1.22439 0.97891 0.97798 0.98642 1.22421 0.93927 0.98314 1.00219 1.22259 0.96177 0.92398 0.87185 0.88537 1.22674 0.81640 0.98383 0.99539 1.45320 1.03051 1.74162 1.10064 1.19281 1.02134 1.24176 0.90550 0.89946 1.25564 0.98500 0.98700 1.02268 1.70055 1.16400 1.36575 1.35536 0.85278 0.76883 0.77272 0.80568 1.22821 1.20688 1.20343 0.90471 0.92373 0.90423 0.92024 0.94665 0.92651 0.91378 0.91008 0.90985 0.91469 0.88636 0.89421 0.89764 0.86141 0.86383 0.93277 0.94654 0.92974 0.92950 0.90372 0.91170 0.93317 0.86947 0.94558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.45 6.62 71.98 0.48 -2.97 16 2 C 0.06 1.47 2.32 44.91 0.10 1.58 16 3 C -0.13 -3.52 9.33 71.98 0.67 -2.85 16 4 N -0.53 -13.32 5.05 -835.50 -4.22 -17.54 16 5 C 0.02 0.45 5.97 86.77 0.52 0.96 16 6 C -0.12 -1.73 7.08 32.07 0.23 -1.50 16 7 C -0.13 -1.96 6.44 31.86 0.21 -1.75 16 8 C 0.09 2.09 2.83 45.26 0.13 2.22 16 9 H 0.06 1.93 7.39 -2.38 -0.02 1.91 16 10 C -0.17 -3.91 2.85 29.85 0.09 -3.82 16 11 C 0.51 17.63 5.24 87.66 0.46 18.09 16 12 O -0.59 -25.53 14.64 -3.05 -0.04 -25.57 16 13 N -0.60 -22.06 2.28 -812.83 -1.85 -23.91 16 14 C 0.13 6.14 5.79 86.55 0.50 6.64 16 15 C 0.17 7.86 3.09 45.32 0.14 8.00 16 16 H 0.07 3.98 6.44 -2.39 -0.02 3.97 16 17 C -0.13 -4.91 6.16 31.41 0.19 -4.72 16 18 C -0.11 -3.41 6.19 31.56 0.20 -3.22 16 19 C 0.13 4.42 4.32 45.48 0.20 4.61 16 20 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 21 C 0.10 3.18 5.76 86.41 0.50 3.68 16 22 N -0.60 -28.22 2.80 -637.39 -1.79 -30.00 16 23 C -0.23 -12.06 10.37 84.04 0.87 -11.19 16 24 H 0.08 4.06 7.84 -2.91 -0.02 4.03 16 25 C -0.06 -3.03 5.42 84.86 0.46 -2.57 16 26 N -0.94 -54.17 10.38 21.65 0.22 -53.95 16 27 Si 0.97 44.27 29.56 68.60 2.03 46.30 16 28 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 29 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 30 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 31 H 0.08 1.25 6.94 -2.38 -0.02 1.23 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.24 5.78 -2.39 -0.01 1.23 16 34 H 0.06 2.05 3.55 -2.39 -0.01 2.05 16 35 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.52 7.87 -2.39 -0.02 1.51 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.09 4.83 -2.39 -0.01 1.08 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.09 1.01 7.85 -2.38 -0.02 0.99 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.12 2.52 3.38 -2.39 -0.01 2.51 16 45 H 0.12 2.14 7.74 -2.39 -0.02 2.12 16 46 H 0.05 2.40 7.11 -2.38 -0.02 2.38 16 47 H 0.04 1.92 7.74 -2.39 -0.02 1.90 16 48 H 0.05 1.99 7.83 -2.38 -0.02 1.97 16 49 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.08 2.03 7.84 -2.39 -0.02 2.01 16 51 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 52 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 53 H 0.11 2.43 6.17 -2.39 -0.01 2.42 16 54 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 Total: -1.00 -68.13 385.99 1.16 -66.97 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.88 Total: 26.50 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 5.93 Total: 11.20 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -7.63 Total: -125.39 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.04 Total: -25.57 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.13 1.16 -66.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029338153.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.004 kcal (2) G-P(sol) polarization free energy of solvation -68.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds