Wall clock time and date at job start Tue Mar 31 2020 19:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46784 * 2 1 4 4 N 1.46901 * 109.46864 * 179.97438 * 3 2 1 5 5 C 1.46851 * 111.00084 * 294.21001 * 4 3 2 6 6 C 1.53036 * 109.52497 * 174.15898 * 5 4 3 7 7 C 1.53119 * 109.27734 * 59.17813 * 6 5 4 8 8 C 1.53122 * 109.16194 * 302.34745 * 7 6 5 9 9 H 1.09005 * 109.53253 * 297.69340 * 8 7 6 10 10 C 1.50703 * 109.50458 * 177.59555 * 8 7 6 11 11 O 1.21275 * 119.99659 * 325.39216 * 10 8 7 12 12 N 1.34773 * 119.99836 * 145.39160 * 10 8 7 13 13 C 1.47168 * 120.71074 * 5.58575 * 12 10 8 14 14 C 1.54482 * 108.00492 * 132.67763 * 13 12 10 15 15 H 1.09002 * 112.34375 * 181.98150 * 14 13 12 16 16 C 1.54546 * 107.85501 * 306.76078 * 14 13 12 17 17 C 1.53731 * 104.95138 * 88.86372 * 16 14 13 18 18 C 1.54545 * 104.95624 * 359.97438 * 17 16 14 19 19 H 1.08997 * 112.68209 * 146.56495 * 18 17 16 20 20 C 1.47159 * 120.70822 * 185.59740 * 12 10 8 21 21 N 1.48305 * 106.90082 * 58.49026 * 14 13 12 22 22 C 1.36935 * 128.07834 * 106.80439 * 21 14 13 23 23 H 1.08003 * 119.99918 * 155.43468 * 22 21 14 24 24 C 1.38809 * 119.99986 * 335.43041 * 22 21 14 25 25 N 1.31620 * 120.00063 * 354.76707 * 24 22 21 26 26 Si 1.86800 * 120.00114 * 174.76870 * 24 22 21 27 27 H 1.48500 * 109.47414 * 179.97438 * 26 24 22 28 28 H 1.48502 * 109.47013 * 299.99822 * 26 24 22 29 29 H 1.48500 * 109.47188 * 59.99818 * 26 24 22 30 30 C 1.46839 * 111.00006 * 169.99953 * 4 3 2 31 31 H 1.08998 * 109.46796 * 60.00214 * 1 2 3 32 32 H 1.09003 * 109.47060 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47161 * 300.00324 * 1 2 3 34 34 H 1.08995 * 109.47161 * 239.99676 * 2 1 3 35 35 H 1.09002 * 109.46829 * 119.99266 * 2 1 3 36 36 H 1.08999 * 109.47066 * 59.99885 * 3 2 1 37 37 H 1.09002 * 109.46839 * 299.99260 * 3 2 1 38 38 H 1.09006 * 109.45810 * 294.17872 * 5 4 3 39 39 H 1.09000 * 109.46292 * 54.14238 * 5 4 3 40 40 H 1.08997 * 109.50390 * 179.11689 * 6 5 4 41 41 H 1.08998 * 109.50286 * 299.23814 * 6 5 4 42 42 H 1.08995 * 109.52753 * 182.43738 * 7 6 5 43 43 H 1.09009 * 109.52327 * 62.24728 * 7 6 5 44 44 H 1.09002 * 109.74414 * 252.41064 * 13 12 10 45 45 H 1.08996 * 109.74878 * 13.08678 * 13 12 10 46 46 H 1.09003 * 110.36656 * 207.57893 * 16 14 13 47 47 H 1.09000 * 110.36716 * 329.78699 * 16 14 13 48 48 H 1.09006 * 110.41778 * 241.06115 * 17 16 14 49 49 H 1.09001 * 110.20648 * 118.82394 * 17 16 14 50 50 H 1.09002 * 109.74532 * 107.58930 * 20 12 10 51 51 H 1.08995 * 109.79267 * 346.88401 * 20 12 10 52 52 H 0.96998 * 120.00457 * 180.02562 * 25 24 22 53 53 H 1.08994 * 109.46676 * 65.82385 * 30 4 3 54 54 H 1.09003 * 109.45444 * 305.84311 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0347 0.8806 1.2513 6 6 5.5576 0.7618 1.1583 7 6 6.1584 2.1477 0.9073 8 6 5.5582 2.7310 -0.3749 9 1 5.8218 2.0973 -1.2218 10 6 6.1000 4.1195 -0.5977 11 8 6.3348 4.8381 0.3506 12 7 6.3235 4.5626 -1.8507 13 6 5.9310 3.7530 -3.0154 14 6 5.1841 4.6729 -4.0066 15 1 4.8294 4.1341 -4.8852 16 6 4.0422 5.3726 -3.2352 17 6 4.6739 6.6541 -2.6677 18 6 6.1437 6.6190 -3.1441 19 1 6.5446 7.6126 -3.3439 20 6 6.9653 5.8662 -2.0836 21 7 6.1155 5.7713 -4.3610 22 6 6.7879 5.9614 -5.5387 23 1 7.1062 6.9530 -5.8247 24 6 7.0604 4.8797 -6.3647 25 7 6.7651 3.6593 -5.9699 26 14 7.8464 5.1559 -8.0366 27 1 8.0326 3.8496 -8.7180 28 1 6.9662 6.0233 -8.8601 29 1 9.1658 5.8143 -7.8607 30 6 4.0353 2.7926 -0.2374 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 1.6766 1.9564 0.8900 37 1 1.6767 1.9563 -0.8901 38 1 3.7715 1.5350 2.0824 39 1 3.6028 -0.1066 1.4157 40 1 5.9490 0.3593 2.0925 41 1 5.8212 0.0966 0.3360 42 1 7.2394 2.0617 0.7973 43 1 5.9279 2.8023 1.7479 44 1 6.8195 3.3390 -3.4923 45 1 5.2734 2.9443 -2.6970 46 1 3.2253 5.6233 -3.9120 47 1 3.6828 4.7342 -2.4281 48 1 4.6282 6.6505 -1.5786 49 1 4.1664 7.5325 -3.0665 50 1 7.9831 5.7164 -2.4440 51 1 6.9836 6.4394 -1.1567 52 1 6.9558 2.9033 -6.5469 53 1 3.7722 3.4380 0.6006 54 1 3.6039 3.1940 -1.1545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029436782.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:58 Heat of formation + Delta-G solvation = -22.951578 kcal Electronic energy + Delta-G solvation = -31768.117457 eV Core-core repulsion = 27932.334657 eV Total energy + Delta-G solvation = -3835.782800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.84038 -40.20032 -38.98769 -35.83471 -35.35849 -34.27861 -32.84174 -32.64039 -31.60858 -31.05934 -27.90380 -27.23058 -26.00503 -25.36686 -24.55408 -23.99262 -22.19613 -21.36037 -21.18923 -20.68318 -19.97597 -18.65614 -17.70970 -17.19239 -16.92539 -16.67831 -16.36570 -16.18812 -15.83737 -15.48750 -15.29496 -14.96921 -14.71953 -14.62484 -14.51353 -14.42784 -14.16969 -13.75831 -13.57942 -13.44918 -13.27779 -13.22125 -12.86565 -12.77573 -12.69665 -12.57884 -12.54962 -12.37757 -12.02618 -12.01455 -11.88780 -11.82866 -11.61794 -11.54779 -11.45034 -11.33520 -11.31582 -11.10905 -10.76310 -10.46631 -9.69935 -9.30644 -8.58630 -7.87404 -5.26281 1.50866 1.51241 1.57435 1.61599 2.10875 2.51603 2.90052 3.33746 3.48042 3.61055 3.71747 3.81806 4.02321 4.07357 4.09524 4.15446 4.20983 4.21437 4.27040 4.34069 4.36806 4.45790 4.47209 4.53865 4.58931 4.64028 4.65244 4.74603 4.75670 4.78943 4.83173 4.87784 4.95582 4.98265 5.02499 5.04292 5.08211 5.10220 5.14842 5.20059 5.26934 5.31634 5.36102 5.37361 5.41440 5.47656 5.56449 5.62863 5.84052 6.06612 6.16690 6.26023 6.60720 7.08749 7.22397 7.71164 8.55522 9.25394 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.013232 B = 0.003547 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.548041 B = 7891.437546 C = 8540.538444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.054 3.946 4 N -0.541 5.541 5 C 0.052 3.948 6 C -0.109 4.109 7 C -0.100 4.100 8 C -0.097 4.097 9 H 0.097 0.903 10 C 0.514 3.486 11 O -0.589 6.589 12 N -0.590 5.590 13 C 0.119 3.881 14 C 0.171 3.829 15 H 0.076 0.924 16 C -0.125 4.125 17 C -0.112 4.112 18 C 0.129 3.871 19 H 0.081 0.919 20 C 0.107 3.893 21 N -0.602 5.602 22 C -0.245 4.245 23 H 0.069 0.931 24 C -0.040 4.040 25 N -0.926 5.926 26 Si 0.968 3.032 27 H -0.294 1.294 28 H -0.281 1.281 29 H -0.283 1.283 30 C 0.081 3.919 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.060 0.940 49 H 0.066 0.934 50 H 0.040 0.960 51 H 0.079 0.921 52 H 0.251 0.749 53 H 0.030 0.970 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.857 -7.259 13.284 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.073 4.073 4 N -0.266 5.266 5 C -0.076 4.076 6 C -0.146 4.146 7 C -0.138 4.138 8 C -0.118 4.118 9 H 0.115 0.885 10 C 0.303 3.697 11 O -0.471 6.471 12 N -0.320 5.320 13 C -0.005 4.005 14 C 0.064 3.936 15 H 0.094 0.906 16 C -0.164 4.164 17 C -0.151 4.151 18 C 0.022 3.978 19 H 0.099 0.901 20 C -0.018 4.018 21 N -0.324 5.324 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.236 4.236 25 N -0.572 5.572 26 Si 0.797 3.203 27 H -0.220 1.220 28 H -0.207 1.207 29 H -0.210 1.210 30 C -0.047 4.047 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.058 0.942 51 H 0.098 0.902 52 H 0.060 0.940 53 H 0.048 0.952 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.474 -7.297 13.137 17.765 hybrid contribution 0.674 0.788 -0.625 1.211 sum -8.800 -6.509 12.512 16.624 Atomic orbital electron populations 1.21722 0.94783 1.02284 1.01908 1.21498 0.96014 0.95159 1.02625 1.22205 0.85839 0.98394 1.00862 1.61914 1.08314 1.20441 1.35925 1.22242 0.95469 1.00531 0.89341 1.21574 0.94446 0.95456 1.03154 1.21422 0.99707 0.97404 0.95279 1.21312 0.96782 0.92303 1.01441 0.88505 1.20981 0.77517 0.89362 0.81841 1.90586 1.55504 1.59084 1.41934 1.48231 1.58236 1.19614 1.05929 1.22456 0.99699 0.93228 0.85120 1.21719 0.88295 0.89392 0.94221 0.90634 1.22444 0.97864 0.97038 0.99010 1.22257 0.95486 0.98084 0.99227 1.22139 0.94763 0.94491 0.86440 0.90076 1.22160 0.95562 0.84812 0.99225 1.45255 1.49867 1.27062 1.10220 1.19132 1.29942 0.92810 0.95517 0.91345 1.25619 1.00620 0.95053 1.02307 1.69967 1.52301 0.97680 1.37210 0.85337 0.78424 0.76258 0.80246 1.21982 1.20746 1.20963 1.21764 0.92038 0.90165 1.00765 0.92782 0.91753 0.92560 0.91733 0.91348 0.94749 0.91010 0.95092 0.88558 0.89202 0.90908 0.92234 0.92189 0.92932 0.89817 0.92205 0.91554 0.92093 0.91498 0.94185 0.90227 0.94028 0.95198 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.20 16 2 C -0.12 -1.76 5.86 30.60 0.18 -1.58 16 3 C 0.05 1.01 4.96 86.31 0.43 1.44 16 4 N -0.54 -11.83 4.66 -896.35 -4.17 -16.01 16 5 C 0.05 0.96 5.29 86.32 0.46 1.42 16 6 C -0.11 -2.09 6.09 30.65 0.19 -1.90 16 7 C -0.10 -2.57 4.98 30.67 0.15 -2.41 16 8 C -0.10 -2.82 1.87 -11.48 -0.02 -2.84 16 9 H 0.10 2.91 6.34 -2.38 -0.02 2.90 16 10 C 0.51 18.58 6.70 87.66 0.59 19.17 16 11 O -0.59 -24.20 15.69 -3.01 -0.05 -24.25 16 12 N -0.59 -22.61 2.26 -813.94 -1.84 -24.45 16 13 C 0.12 4.79 5.38 86.76 0.47 5.26 16 14 C 0.17 7.39 3.13 45.67 0.14 7.53 16 15 H 0.08 3.74 6.89 -2.39 -0.02 3.72 16 16 C -0.12 -4.42 6.16 31.37 0.19 -4.23 16 17 C -0.11 -3.89 6.16 31.37 0.19 -3.69 16 18 C 0.13 5.18 4.31 45.44 0.20 5.37 16 19 H 0.08 3.13 8.14 -2.39 -0.02 3.12 16 20 C 0.11 4.29 5.92 86.53 0.51 4.80 16 21 N -0.60 -28.55 2.77 -635.65 -1.76 -30.31 16 22 C -0.24 -12.88 10.34 84.03 0.87 -12.01 16 23 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 24 C -0.04 -2.10 5.43 84.86 0.46 -1.64 16 25 N -0.93 -50.16 10.19 21.65 0.22 -49.94 16 26 Si 0.97 43.43 29.56 68.60 2.03 45.46 16 27 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 28 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 29 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 30 C 0.08 2.12 4.61 86.33 0.40 2.52 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 0.94 6.43 -2.39 -0.02 0.93 16 36 H 0.03 0.62 8.12 -2.39 -0.02 0.60 16 37 H 0.07 1.40 7.99 -2.39 -0.02 1.38 16 38 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.10 1.45 6.21 -2.39 -0.01 1.44 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.06 1.67 7.78 -2.38 -0.02 1.65 16 44 H 0.05 2.53 7.25 -2.39 -0.02 2.51 16 45 H 0.08 2.98 5.50 -2.39 -0.01 2.96 16 46 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.07 2.13 6.34 -2.39 -0.02 2.11 16 48 H 0.06 2.07 7.84 -2.38 -0.02 2.05 16 49 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.08 3.07 7.08 -2.39 -0.02 3.05 16 52 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 53 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 54 H 0.08 2.04 6.18 -2.39 -0.01 2.03 16 Total: -1.00 -59.65 395.48 1.40 -58.25 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.86 Total: 25.25 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 6.11 Total: 16.00 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -7.55 Total: -120.71 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.05 Total: -24.25 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -59.65 1.40 -58.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029436782.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.294 kcal (2) G-P(sol) polarization free energy of solvation -59.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds