Wall clock time and date at job start Tue Mar 31 2020 19:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47315 * 2 1 4 4 N 1.46902 * 109.47247 * 120.00324 * 2 1 3 5 5 C 1.46846 * 110.99756 * 305.26896 * 4 2 1 6 6 C 1.53034 * 109.52186 * 185.83858 * 5 4 2 7 7 C 1.53118 * 109.28086 * 300.82174 * 6 5 4 8 8 C 1.53115 * 109.16254 * 57.64865 * 7 6 5 9 9 C 1.46852 * 110.99917 * 69.47443 * 4 2 1 10 10 H 1.08998 * 109.46545 * 294.16926 * 9 4 2 11 11 C 1.50705 * 109.46182 * 54.14751 * 9 4 2 12 12 O 1.21279 * 119.99602 * 27.22057 * 11 9 4 13 13 N 1.34777 * 119.99722 * 207.22023 * 11 9 4 14 14 C 1.48532 * 120.90175 * 4.58287 * 13 11 9 15 15 C 1.53884 * 107.40556 * 132.51753 * 14 13 11 16 16 H 1.09001 * 112.09803 * 182.52076 * 15 14 13 17 17 C 1.54548 * 108.36692 * 306.86255 * 15 14 13 18 18 C 1.54281 * 104.85095 * 89.29344 * 17 15 14 19 19 C 1.54539 * 104.84705 * 0.02562 * 18 17 15 20 20 H 1.09005 * 112.68207 * 146.68306 * 19 18 17 21 21 C 1.47165 * 120.70617 * 184.91920 * 13 11 9 22 22 N 1.48308 * 107.21112 * 58.96666 * 15 14 13 23 23 C 1.36938 * 128.07755 * 106.06287 * 22 15 14 24 24 H 1.07998 * 119.99589 * 20.01617 * 23 22 15 25 25 C 1.38813 * 119.99873 * 200.01828 * 23 22 15 26 26 N 1.31614 * 119.99979 * 6.65958 * 25 23 22 27 27 Si 1.86796 * 119.99668 * 186.66531 * 25 23 22 28 28 H 1.48498 * 109.47635 * 59.99622 * 27 25 23 29 29 H 1.48501 * 109.47022 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47143 * 299.99282 * 27 25 23 31 31 H 1.08988 * 109.46967 * 299.99606 * 1 2 3 32 32 H 1.09005 * 109.46968 * 60.00010 * 1 2 3 33 33 H 1.09004 * 109.47139 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47209 * 240.00221 * 2 1 3 35 35 H 1.08993 * 109.47280 * 182.52216 * 3 2 1 36 36 H 1.09001 * 109.47271 * 302.52428 * 3 2 1 37 37 H 1.08999 * 109.46542 * 62.52269 * 3 2 1 38 38 H 1.09000 * 109.46179 * 305.85017 * 5 4 2 39 39 H 1.09001 * 109.46460 * 65.82156 * 5 4 2 40 40 H 1.09006 * 109.50215 * 60.76003 * 6 5 4 41 41 H 1.09000 * 109.50315 * 180.83660 * 6 5 4 42 42 H 1.08998 * 109.52235 * 177.56381 * 7 6 5 43 43 H 1.09007 * 109.51835 * 297.68109 * 7 6 5 44 44 H 1.09004 * 109.50363 * 182.40650 * 8 7 6 45 45 H 1.09001 * 109.49949 * 62.29531 * 8 7 6 46 46 H 1.08996 * 109.54957 * 13.36512 * 14 13 11 47 47 H 1.08999 * 110.60377 * 252.26530 * 14 13 11 48 48 H 1.09000 * 110.36884 * 208.14438 * 17 15 14 49 49 H 1.09009 * 110.36175 * 330.34409 * 17 15 14 50 50 H 1.08992 * 110.36539 * 241.15906 * 18 17 15 51 51 H 1.09009 * 110.35920 * 118.84811 * 18 17 15 52 52 H 1.09000 * 109.74742 * 107.61103 * 21 13 11 53 53 H 1.09001 * 109.74950 * 346.92685 * 21 13 11 54 54 H 0.97007 * 119.99540 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.4488 -0.1033 2.4172 6 6 2.0894 -0.7503 3.6473 7 6 1.8299 -2.2590 3.6178 8 6 2.3913 -2.8403 2.3172 9 6 1.7419 -2.1327 1.1258 10 1 0.6646 -2.2965 1.1494 11 6 2.3063 -2.6880 -0.1565 12 8 3.2601 -2.1532 -0.6810 13 7 1.7510 -3.7790 -0.7204 14 6 0.5223 -4.3899 -0.1517 15 6 -0.4516 -4.6356 -1.3174 16 1 -1.4029 -5.0450 -0.9776 17 6 -0.6301 -3.3094 -2.0907 18 6 0.4828 -3.3219 -3.1592 19 6 1.2321 -4.6547 -2.9350 20 1 1.6130 -5.0838 -3.8618 21 6 2.3532 -4.3981 -1.9119 22 7 0.2330 -5.5329 -2.2796 23 6 -0.0021 -6.8623 -2.5089 24 1 -0.9434 -7.3027 -2.2148 25 6 0.9694 -7.6438 -3.1192 26 7 2.1625 -7.1425 -3.3585 27 14 0.5831 -9.4067 -3.6009 28 1 -0.5463 -9.4204 -4.5650 29 1 1.7790 -10.0210 -4.2314 30 1 0.2093 -10.1803 -2.3896 31 1 -0.3633 0.5137 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1290 1.4428 -0.0452 36 1 1.6403 1.9692 -0.8665 37 1 1.7141 1.9430 0.9118 38 1 1.6441 0.9690 2.4278 39 1 0.3728 -0.2765 2.4346 40 1 3.1636 -0.5656 3.6377 41 1 1.6547 -0.3232 4.5510 42 1 2.3212 -2.7298 4.4693 43 1 0.7569 -2.4451 3.6678 44 1 2.1718 -3.9070 2.2708 45 1 3.4702 -2.6885 2.2868 46 1 0.0724 -3.7038 0.5659 47 1 0.7556 -5.3349 0.3388 48 1 -1.6109 -3.2758 -2.5649 49 1 -0.5046 -2.4594 -1.4199 50 1 1.1572 -2.4781 -3.0142 51 1 0.0490 -3.2944 -4.1589 52 1 2.8249 -5.3418 -1.6379 53 1 3.0964 -3.7257 -2.3406 54 1 2.8413 -7.6885 -3.7854 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029503393.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:01 Heat of formation + Delta-G solvation = -8.497695 kcal Electronic energy + Delta-G solvation = -32803.856169 eV Core-core repulsion = 28968.700137 eV Total energy + Delta-G solvation = -3835.156033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.97009 -40.39144 -38.70488 -36.13826 -35.30475 -34.15776 -32.75067 -31.74745 -31.19040 -31.01884 -28.12640 -27.93692 -26.04692 -25.50619 -25.09833 -24.37285 -21.57101 -21.48850 -21.24121 -20.54207 -19.69046 -18.66999 -17.79020 -17.37031 -16.96788 -16.59031 -16.20715 -16.05677 -15.48007 -15.32714 -15.29132 -14.79659 -14.68428 -14.63852 -14.53792 -14.37915 -14.12677 -13.72295 -13.58833 -13.47708 -13.23243 -13.19962 -12.91085 -12.79589 -12.68961 -12.64847 -12.63713 -12.30942 -12.06170 -12.01895 -11.94654 -11.81401 -11.64255 -11.57445 -11.45201 -11.38362 -11.17153 -11.12147 -10.71528 -10.40390 -9.68748 -9.11960 -8.65337 -7.86047 -5.24253 1.49363 1.50591 1.56846 1.70854 2.03981 2.50899 2.92023 3.34377 3.42619 3.53131 3.85035 3.90363 3.97076 4.05186 4.09624 4.11230 4.20396 4.21281 4.28983 4.31881 4.33691 4.40898 4.44384 4.59306 4.62761 4.69839 4.71552 4.78879 4.80144 4.84125 4.84961 4.93595 4.97041 5.01899 5.02937 5.07809 5.10471 5.11805 5.16796 5.19615 5.24912 5.28540 5.34705 5.38443 5.42097 5.50880 5.53276 5.58523 5.83374 6.09263 6.23270 6.27921 6.65136 7.05417 7.32075 7.72367 8.53270 9.26035 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.018860 B = 0.003807 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.269853 B = 7352.999924 C = 7829.920161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 C -0.132 4.132 4 N -0.526 5.526 5 C 0.050 3.950 6 C -0.115 4.115 7 C -0.111 4.111 8 C -0.106 4.106 9 C 0.082 3.918 10 H 0.076 0.924 11 C 0.511 3.489 12 O -0.579 6.579 13 N -0.594 5.594 14 C 0.101 3.899 15 C 0.127 3.873 16 H 0.095 0.905 17 C -0.109 4.109 18 C -0.125 4.125 19 C 0.171 3.829 20 H 0.070 0.930 21 C 0.130 3.870 22 N -0.601 5.601 23 C -0.235 4.235 24 H 0.081 0.919 25 C -0.051 4.051 26 N -0.937 5.937 27 Si 0.971 3.029 28 H -0.280 1.280 29 H -0.301 1.301 30 H -0.277 1.277 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.103 0.897 47 H 0.054 0.946 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.049 0.951 51 H 0.054 0.946 52 H 0.041 0.959 53 H 0.050 0.950 54 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 15.028 13.886 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.041 4.041 3 C -0.189 4.189 4 N -0.251 5.251 5 C -0.077 4.077 6 C -0.153 4.153 7 C -0.149 4.149 8 C -0.144 4.144 9 C -0.030 4.030 10 H 0.093 0.907 11 C 0.300 3.700 12 O -0.459 6.459 13 N -0.327 5.327 14 C -0.022 4.022 15 C 0.020 3.980 16 H 0.113 0.887 17 C -0.148 4.148 18 C -0.164 4.164 19 C 0.063 3.937 20 H 0.088 0.912 21 C 0.005 3.995 22 N -0.323 5.323 23 C -0.364 4.364 24 H 0.098 0.902 25 C -0.246 4.246 26 N -0.583 5.583 27 Si 0.800 3.200 28 H -0.207 1.207 29 H -0.227 1.227 30 H -0.203 1.203 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.121 0.879 47 H 0.073 0.927 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.068 0.932 51 H 0.073 0.927 52 H 0.060 0.940 53 H 0.068 0.932 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.631 15.121 13.532 21.059 hybrid contribution -0.130 -1.633 -1.030 1.935 sum -5.761 13.488 12.502 19.273 Atomic orbital electron populations 1.22461 0.96122 1.01854 1.03412 1.21767 0.93514 0.96112 0.92742 1.21730 1.00810 0.93874 1.02484 1.61865 1.60032 1.00125 1.03081 1.22306 0.97159 0.99784 0.88426 1.21624 1.01292 0.94935 0.97458 1.21554 1.01622 0.96074 0.95615 1.21517 1.00236 0.98942 0.93714 1.21563 0.99013 0.90232 0.92158 0.90676 1.20993 0.83169 0.79673 0.86204 1.90618 1.29914 1.60325 1.65026 1.48569 1.27569 1.27888 1.28661 1.22819 0.84893 0.97788 0.96745 1.22226 0.95071 0.90890 0.89789 0.88733 1.22405 0.98106 0.97026 0.97229 1.22463 0.97973 0.97116 0.98872 1.21576 0.89021 0.88381 0.94698 0.91155 1.21904 0.96152 0.94990 0.86445 1.45269 1.40532 1.05418 1.41094 1.19249 0.98464 0.83868 1.34846 0.90154 1.25624 0.95033 1.01249 1.02710 1.70043 1.03736 1.36942 1.47629 0.85281 0.76258 0.80460 0.77991 1.20671 1.22746 1.20309 0.90444 0.91548 0.93299 0.92676 0.93696 0.91620 0.90898 0.89229 0.93317 0.92327 0.88950 0.90269 0.90576 0.91432 0.92809 0.87868 0.92733 0.91129 0.91024 0.93206 0.92737 0.94021 0.93202 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.53 8.46 71.98 0.61 -2.93 16 2 C 0.07 1.68 2.55 44.91 0.11 1.80 16 3 C -0.13 -2.77 9.17 71.98 0.66 -2.11 16 4 N -0.53 -13.17 4.20 -850.39 -3.58 -16.74 16 5 C 0.05 0.87 4.56 86.32 0.39 1.26 16 6 C -0.12 -1.78 6.09 30.65 0.19 -1.59 16 7 C -0.11 -1.84 6.00 30.67 0.18 -1.66 16 8 C -0.11 -2.58 5.36 30.64 0.16 -2.41 16 9 C 0.08 2.20 1.31 44.19 0.06 2.26 16 10 H 0.08 1.78 4.61 -2.39 -0.01 1.77 16 11 C 0.51 18.72 5.74 87.66 0.50 19.22 16 12 O -0.58 -25.83 14.61 -3.03 -0.04 -25.88 16 13 N -0.59 -22.71 2.27 -811.35 -1.84 -24.55 16 14 C 0.10 3.34 5.89 86.29 0.51 3.84 16 15 C 0.13 4.55 4.27 45.47 0.19 4.75 16 16 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 17 C -0.11 -3.49 6.18 31.56 0.20 -3.29 16 18 C -0.13 -4.82 6.18 31.55 0.20 -4.62 16 19 C 0.17 8.01 3.11 45.49 0.14 8.15 16 20 H 0.07 3.86 6.60 -2.38 -0.02 3.84 16 21 C 0.13 6.06 5.79 86.57 0.50 6.56 16 22 N -0.60 -28.15 2.79 -636.66 -1.78 -29.92 16 23 C -0.24 -12.19 10.36 84.03 0.87 -11.32 16 24 H 0.08 3.96 7.84 -2.91 -0.02 3.94 16 25 C -0.05 -2.76 5.43 84.86 0.46 -2.30 16 26 N -0.94 -53.68 10.25 21.65 0.22 -53.46 16 27 Si 0.97 44.02 29.56 68.60 2.03 46.05 16 28 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 29 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 30 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 31 H 0.08 1.20 6.46 -2.39 -0.02 1.19 16 32 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.05 1.02 5.37 -2.39 -0.01 1.01 16 34 H 0.05 1.87 5.69 -2.38 -0.01 1.85 16 35 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.21 6.30 -2.39 -0.02 1.19 16 38 H 0.09 1.37 6.14 -2.39 -0.01 1.36 16 39 H 0.05 0.74 6.58 -2.39 -0.02 0.72 16 40 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.10 2.56 5.50 -2.39 -0.01 2.55 16 47 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 48 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.07 2.02 6.43 -2.38 -0.02 2.00 16 50 H 0.05 1.93 7.84 -2.39 -0.02 1.92 16 51 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 52 H 0.04 2.26 7.52 -2.39 -0.02 2.24 16 53 H 0.05 2.44 7.08 -2.39 -0.02 2.42 16 54 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 Total: -1.00 -65.93 385.54 1.83 -64.10 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.88 Total: 24.80 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 5.94 Total: 15.60 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -6.97 Total: -124.67 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.04 Total: -25.88 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -65.93 1.83 -64.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029503393.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.604 kcal (2) G-P(sol) polarization free energy of solvation -65.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds