Wall clock time and date at job start Tue Mar 31 2020 19:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46903 * 110.99576 * 2 1 4 4 C 1.54263 * 110.03504 * 51.23759 * 3 2 1 5 5 C 1.54965 * 104.15977 * 217.13647 * 4 3 2 6 6 C 1.54894 * 102.77865 * 37.88586 * 5 4 3 7 7 C 1.53872 * 110.03140 * 294.01539 * 3 2 1 8 8 C 1.46898 * 111.00320 * 123.95007 * 2 1 3 9 9 C 1.53008 * 109.46909 * 305.65722 * 8 2 1 10 10 C 1.52994 * 109.47574 * 185.65683 * 8 2 1 11 11 C 1.50696 * 109.46961 * 65.64952 * 8 2 1 12 12 O 1.21280 * 120.00119 * 217.42008 * 11 8 2 13 13 N 1.34777 * 119.99668 * 37.42596 * 11 8 2 14 14 C 1.49250 * 127.75280 * 354.92308 * 13 11 8 15 15 C 1.56026 * 105.36670 * 182.18622 * 14 13 11 16 16 H 1.08994 * 116.89104 * 159.37736 * 15 14 13 17 17 C 1.57436 * 99.69082 * 32.83388 * 15 14 13 18 18 C 1.49294 * 126.94467 * 175.41565 * 13 11 8 19 19 H 1.09008 * 116.14934 * 15.82104 * 18 13 11 20 20 C 1.56017 * 104.09171 * 246.67881 * 18 13 11 21 21 N 1.47865 * 105.10103 * 287.91605 * 20 18 13 22 22 C 1.36943 * 126.94507 * 181.97939 * 21 20 18 23 23 H 1.08003 * 119.99874 * 180.02562 * 22 21 20 24 24 C 1.38814 * 119.99494 * 359.75067 * 22 21 20 25 25 N 1.31612 * 120.00437 * 0.27869 * 24 22 21 26 26 Si 1.86804 * 119.99346 * 180.27672 * 24 22 21 27 27 H 1.48493 * 109.47561 * 60.00189 * 26 24 22 28 28 H 1.48504 * 109.46828 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47035 * 299.99969 * 26 24 22 30 30 H 1.08993 * 109.47089 * 295.12088 * 1 2 3 31 31 H 1.08998 * 109.47132 * 55.12235 * 1 2 3 32 32 H 1.08994 * 109.46843 * 175.12077 * 1 2 3 33 33 H 1.09002 * 110.01642 * 172.63041 * 3 2 1 34 34 H 1.08997 * 110.48597 * 335.77630 * 4 3 2 35 35 H 1.09002 * 110.48725 * 98.42623 * 4 3 2 36 36 H 1.09001 * 110.71988 * 279.57807 * 5 4 3 37 37 H 1.08999 * 110.92670 * 156.29774 * 5 4 3 38 38 H 1.09001 * 110.48637 * 203.40766 * 6 5 4 39 39 H 1.09001 * 110.48218 * 80.76192 * 6 5 4 40 40 H 1.09004 * 110.03564 * 238.57160 * 7 3 2 41 41 H 1.09003 * 110.03460 * 0.02562 * 7 3 2 42 42 H 1.08997 * 109.46990 * 172.02585 * 9 8 2 43 43 H 1.09004 * 109.46723 * 292.02068 * 9 8 2 44 44 H 1.08997 * 109.47368 * 52.02168 * 9 8 2 45 45 H 1.09008 * 109.46876 * 300.00122 * 10 8 2 46 46 H 1.09001 * 109.47500 * 59.99464 * 10 8 2 47 47 H 1.09001 * 109.47203 * 180.02562 * 10 8 2 48 48 H 1.09001 * 110.04437 * 63.27297 * 14 13 11 49 49 H 1.08990 * 110.33389 * 301.25662 * 14 13 11 50 50 H 1.08991 * 112.53403 * 191.97963 * 17 15 14 51 51 H 1.09004 * 112.31534 * 64.44138 * 17 15 14 52 52 H 1.09006 * 110.31256 * 169.01214 * 20 18 13 53 53 H 1.08997 * 110.32059 * 46.82414 * 20 18 13 54 54 H 0.96995 * 120.00084 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.3376 2.1900 1.1301 5 6 1.1587 3.6032 0.5198 6 6 0.7697 3.2959 -0.9476 7 6 1.6350 2.0744 -1.3205 8 6 1.9956 -0.7659 1.1376 9 6 1.3933 -0.2278 2.4372 10 6 3.5184 -0.6266 1.1853 11 6 1.6287 -2.2187 0.9779 12 8 1.3271 -2.8785 1.9498 13 7 1.6358 -2.7850 -0.2452 14 6 1.8745 -2.1188 -1.5592 15 6 1.7083 -3.2425 -2.6288 16 1 1.4995 -2.9241 -3.6500 17 6 0.6052 -4.1176 -1.9245 18 6 1.3940 -4.2219 -0.5701 19 1 0.9343 -4.8214 0.2157 20 6 2.7690 -4.7263 -1.1078 21 7 2.9130 -4.1039 -2.4413 22 6 3.9458 -4.2778 -3.3236 23 1 3.9368 -3.7640 -4.2736 24 6 5.0071 -5.1098 -2.9945 25 7 5.0181 -5.7359 -1.8369 26 14 6.4196 -5.3409 -4.1949 27 1 7.0619 -4.0290 -4.4621 28 1 7.4184 -6.2717 -3.6106 29 1 5.9012 -5.9064 -5.4664 30 1 -0.3633 0.4362 0.9304 31 1 -0.3633 0.5876 -0.8431 32 1 -0.3633 -1.0239 -0.0874 33 1 3.0774 1.3559 0.1314 34 1 0.3701 1.7643 1.3960 35 1 1.9906 2.2300 2.0020 36 1 2.0931 4.1628 0.5626 37 1 0.3608 4.1473 1.0252 38 1 1.0082 4.1430 -1.5909 39 1 -0.2896 3.0488 -1.0177 40 1 2.5419 2.4007 -1.8295 41 1 1.0691 1.3980 -1.9612 42 1 1.6706 -0.8814 3.2641 43 1 1.7729 0.7766 2.6249 44 1 0.3074 -0.1951 2.3482 45 1 3.9475 -1.0099 0.2594 46 1 3.7837 0.4243 1.3008 47 1 3.9091 -1.1953 2.0291 48 1 2.8847 -1.7106 -1.5931 49 1 1.1409 -1.3294 -1.7224 50 1 0.4729 -5.0877 -2.4033 51 1 -0.3389 -3.5838 -1.8146 52 1 2.7654 -5.8128 -1.1957 53 1 3.5749 -4.4018 -0.4496 54 1 5.7598 -6.3170 -1.6068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032487989.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:17 Heat of formation + Delta-G solvation = 34.760879 kcal Electronic energy + Delta-G solvation = -32614.645604 eV Core-core repulsion = 28781.365404 eV Total energy + Delta-G solvation = -3833.280200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.08248 -40.67905 -39.19126 -36.58066 -35.33799 -33.11085 -32.63268 -30.71226 -30.14568 -29.93409 -29.14992 -27.87403 -26.91232 -26.06312 -25.33458 -23.65936 -21.46238 -21.42551 -21.18959 -20.05593 -19.63622 -18.71354 -18.13277 -17.35933 -17.04133 -16.75892 -16.21830 -16.05741 -16.01787 -15.62394 -15.34043 -14.89177 -14.73258 -14.35633 -14.01705 -13.81432 -13.53568 -13.46950 -13.38621 -13.20280 -13.16577 -12.86128 -12.83771 -12.74583 -12.63358 -12.58855 -12.47719 -12.25354 -12.14526 -12.11492 -12.03924 -11.89260 -11.80324 -11.77458 -11.49308 -11.45816 -11.29371 -11.20884 -10.79797 -10.56174 -9.42232 -9.18937 -8.79546 -7.80410 -5.15366 1.47612 1.50592 1.56519 1.64390 2.07911 2.51469 2.84298 3.35506 3.40308 3.53412 3.75847 3.77671 3.84095 3.97080 4.00262 4.03723 4.09544 4.13523 4.25774 4.31332 4.43104 4.53981 4.59915 4.61101 4.66626 4.72114 4.74536 4.78269 4.80823 4.83619 4.86340 4.92978 4.96074 5.02272 5.05798 5.08536 5.12998 5.15071 5.19205 5.22156 5.23542 5.31472 5.38542 5.42806 5.48198 5.49860 5.57820 5.59549 5.67461 6.03123 6.13863 6.19894 6.79168 7.06804 7.24690 7.75360 8.46920 9.30518 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.003922 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.693843 B = 7136.891469 C = 7745.000108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.517 5.517 3 C 0.072 3.928 4 C -0.161 4.161 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.114 4.114 8 C 0.107 3.893 9 C -0.171 4.171 10 C -0.135 4.135 11 C 0.535 3.465 12 O -0.602 6.602 13 N -0.594 5.594 14 C 0.127 3.873 15 C 0.126 3.874 16 H 0.130 0.870 17 C -0.127 4.127 18 C 0.093 3.907 19 H 0.105 0.895 20 C 0.193 3.807 21 N -0.615 5.615 22 C -0.227 4.227 23 H 0.094 0.906 24 C -0.071 4.071 25 N -0.958 5.958 26 Si 0.975 3.025 27 H -0.277 1.277 28 H -0.304 1.304 29 H -0.274 1.274 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.048 0.952 46 H 0.098 0.902 47 H 0.050 0.950 48 H 0.044 0.956 49 H 0.106 0.894 50 H 0.077 0.923 51 H 0.099 0.901 52 H 0.013 0.987 53 H -0.006 1.006 54 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.508 20.580 2.251 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.241 5.241 3 C -0.036 4.036 4 C -0.199 4.199 5 C -0.157 4.157 6 C -0.158 4.158 7 C -0.152 4.152 8 C 0.014 3.986 9 C -0.229 4.229 10 C -0.193 4.193 11 C 0.324 3.676 12 O -0.484 6.484 13 N -0.325 5.325 14 C 0.004 3.996 15 C 0.019 3.981 16 H 0.148 0.852 17 C -0.166 4.166 18 C -0.010 4.010 19 H 0.123 0.877 20 C 0.067 3.933 21 N -0.340 5.340 22 C -0.356 4.356 23 H 0.112 0.888 24 C -0.263 4.263 25 N -0.608 5.608 26 Si 0.804 3.196 27 H -0.203 1.203 28 H -0.231 1.231 29 H -0.200 1.200 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.117 0.883 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.124 0.876 50 H 0.096 0.904 51 H 0.117 0.883 52 H 0.031 0.969 53 H 0.012 0.988 54 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.257 19.917 2.333 22.997 hybrid contribution 1.186 -0.814 0.658 1.582 sum -10.071 19.102 2.991 21.801 Atomic orbital electron populations 1.22606 0.87042 1.01668 1.02241 1.62609 1.08479 1.13859 1.39177 1.22603 0.99768 0.85526 0.95657 1.23396 1.01619 0.96571 0.98361 1.22455 1.01578 0.95994 0.95699 1.22351 0.99594 0.97464 0.96363 1.22159 1.00343 0.96663 0.95999 1.20997 0.96810 0.88786 0.91997 1.22653 1.01564 1.02686 0.95994 1.21874 0.92011 1.03710 1.01692 1.20593 0.76106 0.89957 0.80937 1.90621 1.52287 1.66041 1.39409 1.49461 1.67170 1.09181 1.06708 1.23282 1.00859 0.95028 0.80447 1.23803 0.85862 0.90482 0.97905 0.85215 1.24063 0.97581 1.01143 0.93827 1.24114 0.96853 0.83235 0.96836 0.87748 1.21442 0.91397 0.94507 0.85927 1.45464 1.21046 1.51832 1.15653 1.19491 0.96891 1.21798 0.97394 0.88849 1.25620 1.01484 1.00375 0.98853 1.70161 1.32561 1.34615 1.23446 0.85188 0.78854 0.77307 0.78209 1.20259 1.23061 1.20023 0.93489 0.88880 0.93260 0.89615 0.90516 0.91097 0.91347 0.91184 0.91114 0.91494 0.91500 0.90902 0.93250 0.88217 0.91711 0.93311 0.88334 0.93118 0.93736 0.87586 0.90442 0.88285 0.96855 0.98802 0.94878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 6.97 127.69 0.89 1.12 16 2 N -0.52 -11.24 1.97 -847.54 -1.67 -12.92 16 3 C 0.07 1.24 2.59 45.64 0.12 1.36 16 4 C -0.16 -2.26 4.19 31.69 0.13 -2.12 16 5 C -0.12 -1.37 6.91 31.91 0.22 -1.15 16 6 C -0.12 -1.40 6.83 31.67 0.22 -1.18 16 7 C -0.11 -1.69 5.90 31.32 0.18 -1.51 16 8 C 0.11 2.95 0.47 2.78 0.00 2.95 16 9 C -0.17 -4.09 6.68 71.98 0.48 -3.61 16 10 C -0.14 -3.80 7.93 71.98 0.57 -3.23 16 11 C 0.53 19.91 5.64 87.66 0.49 20.40 16 12 O -0.60 -26.71 16.23 -3.03 -0.05 -26.76 16 13 N -0.59 -22.09 2.84 -764.77 -2.17 -24.27 16 14 C 0.13 4.22 5.03 86.89 0.44 4.66 16 15 C 0.13 4.51 5.54 47.07 0.26 4.77 16 16 H 0.13 3.98 8.14 -2.39 -0.02 3.96 16 17 C -0.13 -4.17 6.84 33.59 0.23 -3.94 16 18 C 0.09 3.78 5.20 46.93 0.24 4.03 16 19 H 0.10 4.27 8.04 -2.38 -0.02 4.26 16 20 C 0.19 9.94 4.75 87.16 0.41 10.36 16 21 N -0.62 -30.15 3.02 -647.84 -1.96 -32.10 16 22 C -0.23 -12.20 10.37 84.03 0.87 -11.33 16 23 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 24 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 25 N -0.96 -59.27 10.56 21.65 0.23 -59.04 16 26 Si 0.98 45.75 29.55 68.60 2.03 47.78 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 28 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 29 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 30 H 0.05 0.85 4.02 -2.39 -0.01 0.84 16 31 H 0.09 1.43 6.60 -2.39 -0.02 1.41 16 32 H 0.05 1.16 7.00 -2.39 -0.02 1.14 16 33 H 0.09 1.60 5.56 -2.39 -0.01 1.59 16 34 H 0.08 1.13 4.62 -2.39 -0.01 1.12 16 35 H 0.07 0.98 6.44 -2.39 -0.02 0.96 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.07 1.16 6.84 -2.39 -0.02 1.15 16 42 H 0.05 1.41 7.58 -2.39 -0.02 1.39 16 43 H 0.10 1.84 4.66 -2.38 -0.01 1.83 16 44 H 0.06 1.50 5.75 -2.39 -0.01 1.49 16 45 H 0.05 1.62 7.57 -2.38 -0.02 1.60 16 46 H 0.10 2.09 6.07 -2.39 -0.01 2.08 16 47 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 48 H 0.04 1.72 7.57 -2.39 -0.02 1.70 16 49 H 0.11 2.83 5.67 -2.39 -0.01 2.82 16 50 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 51 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 52 H 0.01 0.77 7.47 -2.38 -0.02 0.76 16 53 H -0.01 -0.38 7.67 -2.39 -0.02 -0.40 16 54 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -71.13 381.39 3.53 -67.60 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.89 Total: 21.72 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 6.23 Total: 17.99 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -5.57 Total: -128.32 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.05 Total: -26.76 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -71.13 3.53 -67.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032487989.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.360 kcal (2) G-P(sol) polarization free energy of solvation -71.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds