Wall clock time and date at job start Tue Mar 31 2020 19:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.64213 * 2 1 4 4 C 1.54593 * 110.72597 * 123.14862 * 2 1 3 5 5 C 1.53998 * 105.13769 * 140.31234 * 4 2 1 6 6 N 1.47901 * 107.06105 * 1.23082 * 5 4 2 7 7 C 1.46892 * 110.99933 * 214.15141 * 6 5 4 8 8 C 1.50704 * 109.47164 * 176.63845 * 7 6 5 9 9 O 1.21286 * 119.99735 * 6.09118 * 8 7 6 10 10 N 1.34777 * 120.00262 * 185.81778 * 8 7 6 11 11 C 1.46926 * 120.56233 * 359.97438 * 10 8 7 12 12 C 1.52877 * 108.93855 * 234.21428 * 11 10 8 13 13 C 1.52276 * 109.48709 * 306.70112 * 12 11 10 14 14 C 1.54515 * 110.20602 * 182.06394 * 13 12 11 15 15 C 1.55018 * 101.53253 * 153.22516 * 14 13 12 16 16 N 1.47479 * 104.90181 * 323.62241 * 15 14 13 17 17 C 1.36940 * 125.66131 * 203.99795 * 16 15 14 18 18 H 1.07999 * 119.99938 * 180.02562 * 17 16 15 19 19 C 1.38817 * 120.00129 * 0.02665 * 17 16 15 20 20 N 1.31616 * 119.99532 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00054 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46923 * 89.99862 * 21 19 17 23 23 H 1.48498 * 109.47303 * 209.99586 * 21 19 17 24 24 H 1.48497 * 109.47176 * 329.99961 * 21 19 17 25 25 C 1.47180 * 108.67593 * 24.01938 * 16 15 14 26 26 C 1.52275 * 111.26737 * 59.51137 * 13 12 11 27 27 C 1.46929 * 120.56325 * 180.27469 * 10 8 7 28 28 C 1.48531 * 105.81783 * 334.66783 * 6 5 4 29 29 H 1.09003 * 109.47139 * 298.30455 * 1 2 3 30 30 H 1.09000 * 109.47279 * 58.30202 * 1 2 3 31 31 H 1.08997 * 109.46923 * 178.30482 * 1 2 3 32 32 H 1.09000 * 110.30679 * 21.40476 * 4 2 1 33 33 H 1.09000 * 110.39782 * 259.27530 * 4 2 1 34 34 H 1.08993 * 109.91949 * 241.87334 * 5 4 2 35 35 H 1.09003 * 109.91192 * 120.58042 * 5 4 2 36 36 H 1.08997 * 109.47196 * 56.64043 * 7 6 5 37 37 H 1.08996 * 109.47759 * 296.63910 * 7 6 5 38 38 H 1.09006 * 109.59467 * 354.02287 * 11 10 8 39 39 H 1.08998 * 109.60210 * 114.48968 * 11 10 8 40 40 H 1.09003 * 109.54859 * 186.63431 * 12 11 10 41 41 H 1.09007 * 109.35214 * 66.64914 * 12 11 10 42 42 H 1.09007 * 111.01292 * 271.29056 * 14 13 12 43 43 H 1.09000 * 111.00920 * 35.16018 * 14 13 12 44 44 H 1.09003 * 110.35403 * 204.76327 * 15 14 13 45 45 H 1.09002 * 110.44306 * 82.52362 * 15 14 13 46 46 H 0.97001 * 119.99786 * 180.02562 * 20 19 17 47 47 H 1.09001 * 109.90211 * 239.12326 * 25 16 15 48 48 H 1.08993 * 109.90656 * 117.86421 * 25 16 15 49 49 H 1.08999 * 109.48054 * 180.38757 * 26 13 12 50 50 H 1.08994 * 109.49295 * 60.36165 * 26 13 12 51 51 H 1.09002 * 109.59272 * 245.51323 * 27 10 8 52 52 H 1.09003 * 109.59702 * 5.97830 * 27 10 8 53 53 H 1.09003 * 110.66619 * 157.64317 * 28 6 5 54 54 H 1.08997 * 110.66787 * 280.76962 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0771 -0.7906 1.2106 5 6 3.2893 -1.5697 0.6674 6 7 3.4318 -1.2105 -0.7602 7 6 3.9212 -2.3523 -1.5440 8 6 3.9750 -1.9747 -3.0020 9 8 3.7455 -0.8332 -3.3416 10 7 4.2836 -2.9041 -3.9280 11 6 4.5703 -4.2890 -3.5298 12 6 5.9313 -4.6961 -4.0946 13 6 5.9571 -4.4361 -5.5948 14 6 7.3079 -4.8901 -6.1919 15 6 6.9079 -5.2110 -7.6548 16 7 5.5556 -5.7917 -7.5595 17 6 4.9803 -6.6302 -8.4767 18 1 3.9797 -7.0029 -8.3146 19 6 5.6834 -7.0014 -9.6146 20 7 6.9027 -6.5468 -9.8123 21 14 4.8990 -8.1458 -10.8653 22 1 4.1686 -7.3443 -11.8798 23 1 5.9554 -8.9468 -11.5343 24 1 3.9494 -9.0560 -10.1762 25 6 4.9267 -5.3199 -6.3153 26 6 5.7129 -2.9653 -5.9047 27 6 4.3455 -2.5481 -5.3521 28 6 2.0783 -0.7966 -1.2106 29 1 -0.3633 0.4873 0.9048 30 1 -0.3634 0.5400 -0.8744 31 1 -0.3633 -1.0272 -0.0304 32 1 1.3208 -1.4806 1.5848 33 1 2.3893 -0.1077 2.0006 34 1 3.1161 -2.6414 0.7652 35 1 4.1887 -1.2849 1.2135 36 1 3.2472 -3.1988 -1.4126 37 1 4.9194 -2.6264 -1.2027 38 1 4.5913 -4.3598 -2.4422 39 1 3.8002 -4.9505 -3.9266 40 1 6.1021 -5.7561 -3.9064 41 1 6.7130 -4.1104 -3.6107 42 1 8.0419 -4.0850 -6.1550 43 1 7.6803 -5.7799 -5.6843 44 1 7.6007 -5.9325 -8.0878 45 1 6.8879 -4.2998 -8.2527 46 1 7.3938 -6.8058 -10.6076 47 1 4.6633 -6.1707 -5.6868 48 1 4.0355 -4.7370 -6.5477 49 1 5.7306 -2.8135 -6.9839 50 1 6.4922 -2.3615 -5.4399 51 1 3.5573 -3.0708 -5.8941 52 1 4.2184 -1.4715 -5.4657 53 1 2.1445 -0.1592 -2.0924 54 1 1.4561 -1.6687 -1.4108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035228203.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:22 Heat of formation + Delta-G solvation = -21.942958 kcal Electronic energy + Delta-G solvation = -30436.943047 eV Core-core repulsion = 26601.203984 eV Total energy + Delta-G solvation = -3835.739063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.68867 -40.42383 -39.23045 -37.14255 -34.88548 -34.40692 -32.50776 -32.32259 -30.81529 -30.48026 -28.49281 -27.65163 -26.53028 -25.87769 -24.17988 -23.73871 -22.15112 -21.94589 -21.07468 -20.74219 -18.99873 -18.87357 -18.09104 -17.18496 -16.88375 -16.78104 -16.65027 -16.26374 -15.89834 -15.64322 -15.29177 -14.98812 -14.79972 -14.36523 -14.30939 -14.14412 -13.98831 -13.90220 -13.76418 -13.54996 -13.44022 -13.19990 -12.95435 -12.82749 -12.78683 -12.75140 -12.42700 -12.29554 -12.21881 -12.13971 -12.00472 -11.78437 -11.68181 -11.57883 -11.43817 -11.40584 -11.20987 -11.03800 -10.71671 -10.64013 -9.61681 -9.34932 -8.84498 -7.75869 -5.19309 1.45693 1.47321 1.55912 1.62715 1.92284 2.50062 3.02744 3.33092 3.45177 3.66394 3.68591 3.71731 3.80190 3.87094 3.96331 4.05411 4.11604 4.22956 4.28055 4.30809 4.32654 4.38230 4.48378 4.52701 4.62011 4.62309 4.68593 4.72467 4.74930 4.77560 4.79523 4.84001 4.87484 4.89617 5.03588 5.04752 5.08160 5.10334 5.11970 5.25658 5.26470 5.31127 5.37637 5.41887 5.43598 5.48314 5.61339 5.69012 5.85667 5.90172 5.98527 6.33352 6.46958 7.12876 7.20812 7.81671 8.46037 9.25778 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.025367 B = 0.002282 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.534855 B =12265.980314 C =12634.525679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.122 4.122 5 C 0.034 3.966 6 N -0.523 5.523 7 C 0.034 3.966 8 C 0.510 3.490 9 O -0.570 6.570 10 N -0.605 5.605 11 C 0.106 3.894 12 C -0.110 4.110 13 C -0.058 4.058 14 C -0.121 4.121 15 C 0.156 3.844 16 N -0.625 5.625 17 C -0.234 4.234 18 H 0.079 0.921 19 C -0.070 4.070 20 N -0.950 5.950 21 Si 0.977 3.023 22 H -0.290 1.290 23 H -0.294 1.294 24 H -0.268 1.268 25 C 0.144 3.856 26 C -0.104 4.104 27 C 0.120 3.880 28 C 0.041 3.959 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.067 0.933 45 H -0.019 1.019 46 H 0.245 0.755 47 H 0.031 0.969 48 H 0.018 0.982 49 H 0.052 0.948 50 H 0.071 0.929 51 H 0.062 0.938 52 H 0.077 0.923 53 H 0.066 0.934 54 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 7.944 25.358 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.160 4.160 5 C -0.093 4.093 6 N -0.248 5.248 7 C -0.097 4.097 8 C 0.299 3.701 9 O -0.449 6.449 10 N -0.339 5.339 11 C -0.015 4.015 12 C -0.148 4.148 13 C -0.059 4.059 14 C -0.160 4.160 15 C 0.031 3.969 16 N -0.351 5.351 17 C -0.364 4.364 18 H 0.097 0.903 19 C -0.262 4.262 20 N -0.600 5.600 21 Si 0.806 3.194 22 H -0.217 1.217 23 H -0.220 1.220 24 H -0.193 1.193 25 C 0.020 3.980 26 C -0.142 4.142 27 C -0.003 4.003 28 C -0.087 4.087 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.145 0.855 38 H 0.136 0.864 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.085 0.915 45 H -0.002 1.002 46 H 0.055 0.945 47 H 0.049 0.951 48 H 0.036 0.964 49 H 0.071 0.929 50 H 0.089 0.911 51 H 0.080 0.920 52 H 0.095 0.905 53 H 0.085 0.915 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.234 8.837 24.939 27.429 hybrid contribution -0.646 -1.137 -1.728 2.167 sum -7.880 7.700 23.211 25.693 Atomic orbital electron populations 1.21742 0.93574 1.02100 1.02262 1.22061 0.96173 0.99282 0.94082 0.90991 1.22485 0.96908 0.99139 0.97497 1.22984 0.99627 0.99243 0.87446 1.64543 1.24674 1.32518 1.03075 1.22278 1.04478 0.93689 0.89223 1.21053 0.75787 0.84443 0.88784 1.90652 1.50646 1.21184 1.82445 1.48191 1.68553 1.10749 1.06403 1.21925 0.97093 0.80655 1.01870 1.21700 0.97668 1.02900 0.92525 1.20920 0.95097 0.94011 0.95875 1.22862 0.96232 1.00547 0.96334 1.21686 0.87356 0.95027 0.92847 1.44864 1.14449 1.54199 1.21612 1.19440 0.98400 1.19299 0.99215 0.90290 1.25612 0.97348 1.02778 1.00476 1.70075 1.12058 1.49661 1.28175 0.85084 0.77064 0.78378 0.78863 1.21732 1.22016 1.19287 1.21524 0.94524 0.94912 0.87082 1.21599 0.97007 0.95383 1.00238 1.21442 0.97168 1.00868 0.80805 1.23309 0.88131 0.98549 0.98703 0.91140 0.93059 0.92375 0.90130 0.90082 0.92105 0.89553 0.89745 0.85519 0.86406 0.90983 0.89285 0.90059 0.90648 0.91331 0.91479 1.00155 0.94502 0.95124 0.96449 0.92888 0.91069 0.91969 0.90469 0.91514 0.94248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.15 71.98 0.66 -1.09 16 2 C -0.10 -1.51 3.66 -9.59 -0.04 -1.55 16 3 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 4 C -0.12 -1.41 6.51 31.47 0.20 -1.20 16 5 C 0.03 0.44 6.70 86.45 0.58 1.02 16 6 N -0.52 -10.18 5.11 -887.60 -4.54 -14.72 16 7 C 0.03 0.58 3.67 85.56 0.31 0.89 16 8 C 0.51 12.82 7.33 87.66 0.64 13.46 16 9 O -0.57 -19.11 13.70 -3.05 -0.04 -19.15 16 10 N -0.61 -14.46 2.97 -819.32 -2.43 -16.89 16 11 C 0.11 1.94 6.00 86.26 0.52 2.46 16 12 C -0.11 -2.35 4.69 30.31 0.14 -2.21 16 13 C -0.06 -1.80 0.53 -51.91 -0.03 -1.83 16 14 C -0.12 -4.33 5.99 31.80 0.19 -4.14 16 15 C 0.16 7.67 5.56 86.88 0.48 8.16 16 16 N -0.63 -31.84 3.40 -692.48 -2.36 -34.19 16 17 C -0.23 -13.13 10.28 84.03 0.86 -12.26 16 18 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 19 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 20 N -0.95 -57.12 10.09 21.65 0.22 -56.90 16 21 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 C 0.14 5.62 5.44 86.48 0.47 6.09 16 26 C -0.10 -3.19 4.78 30.45 0.15 -3.05 16 27 C 0.12 3.47 6.14 86.39 0.53 4.00 16 28 C 0.04 0.84 5.03 86.65 0.44 1.28 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.69 8.12 -2.39 -0.02 0.67 16 32 H 0.08 0.73 7.85 -2.39 -0.02 0.72 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.59 7.68 -2.39 -0.02 0.58 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.07 7.47 -2.39 -0.02 1.05 16 37 H 0.13 1.62 7.95 -2.39 -0.02 1.61 16 38 H 0.12 1.28 5.93 -2.38 -0.01 1.26 16 39 H 0.07 1.39 7.47 -2.39 -0.02 1.37 16 40 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 41 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.07 2.41 8.01 -2.38 -0.02 2.39 16 43 H 0.07 2.34 8.01 -2.39 -0.02 2.32 16 44 H 0.07 3.80 5.88 -2.39 -0.01 3.79 16 45 H -0.02 -1.05 7.76 -2.39 -0.02 -1.07 16 46 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 47 H 0.03 1.15 7.59 -2.39 -0.02 1.13 16 48 H 0.02 0.70 6.07 -2.39 -0.01 0.69 16 49 H 0.05 1.92 7.49 -2.39 -0.02 1.90 16 50 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.06 1.91 6.53 -2.39 -0.02 1.89 16 52 H 0.08 2.42 6.99 -2.39 -0.02 2.40 16 53 H 0.07 1.84 6.43 -2.39 -0.02 1.83 16 54 H 0.04 0.78 7.90 -2.39 -0.02 0.76 16 Total: -1.00 -72.04 395.47 0.32 -71.72 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.86 Total: 15.67 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 6.58 Total: 6.51 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -9.10 Total: -122.71 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.04 Total: -19.15 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.04 0.32 -71.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035228203.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.772 kcal (2) G-P(sol) polarization free energy of solvation -72.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds