Wall clock time and date at job start Tue Mar 31 2020 19:07:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.53009 * 109.47098 * 2 1
4 4 H 1.08998 * 109.90023 * 306.00003 * 3 2 1
5 5 C 1.53984 * 109.91788 * 184.89679 * 3 2 1
6 6 H 1.08999 * 110.31176 * 358.23499 * 5 3 2
7 7 C 1.50696 * 110.31088 * 120.30926 * 5 3 2
8 8 O 1.21290 * 120.00005 * 359.97438 * 7 5 3
9 9 N 1.34776 * 120.00491 * 179.97438 * 7 5 3
10 10 C 1.46888 * 120.46733 * 179.97438 * 9 7 5
11 11 C 1.53357 * 108.74136 * 124.34112 * 10 9 7
12 12 C 1.52555 * 109.12419 * 52.26738 * 11 10 9
13 13 C 1.52961 * 114.06822 * 75.53819 * 12 11 10
14 14 N 1.47156 * 87.85528 * 139.43894 * 13 12 11
15 15 C 1.36934 * 135.99883 * 153.31325 * 14 13 12
16 16 H 1.08002 * 120.00109 * 4.17672 * 15 14 13
17 17 C 1.38813 * 120.00123 * 184.17914 * 15 14 13
18 18 N 1.31624 * 119.99835 * 5.96172 * 17 15 14
19 19 Si 1.86804 * 120.00363 * 185.96864 * 17 15 14
20 20 H 1.48500 * 109.47356 * 84.97746 * 19 17 15
21 21 H 1.48500 * 109.46773 * 324.98118 * 19 17 15
22 22 H 1.48498 * 109.47193 * 204.98335 * 19 17 15
23 23 C 1.47166 * 88.00032 * 333.57444 * 14 13 12
24 24 C 1.52554 * 113.43095 * 302.66330 * 12 11 10
25 25 C 1.46890 * 120.45777 * 359.97396 * 9 7 5
26 26 C 1.54603 * 105.13807 * 239.22294 * 5 3 2
27 27 C 1.54930 * 102.91999 * 338.04265 * 26 5 3
28 28 N 1.47899 * 110.08000 * 67.20261 * 3 2 1
29 29 C 1.46900 * 111.00217 * 265.29110 * 28 3 2
30 30 H 1.08997 * 109.47715 * 292.85029 * 1 2 3
31 31 H 1.08997 * 109.47470 * 52.85500 * 1 2 3
32 32 H 1.09001 * 109.47111 * 172.84896 * 1 2 3
33 33 H 1.09000 * 109.47532 * 240.00282 * 2 1 3
34 34 H 1.09006 * 109.47198 * 119.99378 * 2 1 3
35 35 H 1.09006 * 109.59020 * 4.56762 * 10 9 7
36 36 H 1.08998 * 109.59739 * 244.12113 * 10 9 7
37 37 H 1.09000 * 109.53145 * 292.36595 * 11 10 9
38 38 H 1.09003 * 109.52823 * 172.15446 * 11 10 9
39 39 H 1.09001 * 113.48233 * 24.69254 * 13 12 11
40 40 H 1.08997 * 113.48569 * 254.19083 * 13 12 11
41 41 H 0.97005 * 119.99521 * 180.02562 * 18 17 15
42 42 H 1.09006 * 113.49040 * 141.17785 * 23 14 13
43 43 H 1.09004 * 113.49050 * 271.68267 * 23 14 13
44 44 H 1.08995 * 109.53087 * 177.22008 * 24 12 11
45 45 H 1.09002 * 109.52861 * 297.43048 * 24 12 11
46 46 H 1.09000 * 109.59229 * 355.42847 * 25 9 7
47 47 H 1.09005 * 109.58581 * 115.72008 * 25 9 7
48 48 H 1.09001 * 110.72446 * 96.40336 * 26 5 3
49 49 H 1.09002 * 110.72421 * 219.68683 * 26 5 3
50 50 H 1.09001 * 110.67023 * 278.98145 * 27 26 5
51 51 H 1.09001 * 110.81351 * 155.91778 * 27 26 5
52 52 H 1.08995 * 109.46916 * 65.86029 * 29 28 3
53 53 H 1.08998 * 109.47096 * 185.85454 * 29 28 3
54 54 H 1.08992 * 109.47354 * 305.85578 * 29 28 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.5957 1.9932 -0.8292
5 6 3.5748 1.4564 -0.1236
6 1 3.9612 0.4376 -0.1523
7 6 3.9932 2.2087 -1.3605
8 8 3.1532 2.6951 -2.0877
9 7 5.3009 2.3410 -1.6587
10 6 5.7201 3.0718 -2.8620
11 6 6.6866 4.1884 -2.4486
12 6 7.8038 3.5928 -1.5974
13 6 8.8486 2.8124 -2.3968
14 7 9.8780 3.4173 -1.5365
15 6 11.1345 3.0744 -1.1140
16 1 11.6040 2.1767 -1.4884
17 6 11.8050 3.8805 -0.2043
18 7 11.1907 4.9088 0.3414
19 14 13.5790 3.5061 0.2454
20 1 14.4847 4.1255 -0.7552
21 1 13.7867 2.0357 0.2577
22 1 13.8758 4.0592 1.5912
23 6 8.9619 4.5493 -1.3243
24 6 7.2980 2.8639 -0.3564
25 6 6.3268 1.7566 -0.7848
26 6 4.0753 2.1868 1.1438
27 6 2.8375 3.0096 1.5810
28 7 1.7018 2.1007 1.2806
29 6 0.4428 2.8497 1.1712
30 1 -0.3634 0.3990 0.9469
31 1 -0.3634 0.6205 -0.8191
32 1 -0.3633 -1.0197 -0.1279
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5138 0.8901
35 1 4.8468 3.5059 -3.3488
36 1 6.2220 2.3893 -3.5478
37 1 6.1492 4.9400 -1.8705
38 1 7.1135 4.6490 -3.3395
39 1 8.9175 3.1216 -3.4398
40 1 8.7659 1.7318 -2.2812
41 1 11.6594 5.4723 0.9768
42 1 8.9748 4.9334 -0.3042
43 1 9.0618 5.3354 -2.0727
44 1 8.1407 2.4232 0.1762
45 1 6.7822 3.5690 0.2954
46 1 5.8531 1.3244 0.0966
47 1 6.8688 0.9808 -1.3258
48 1 4.3551 1.4708 1.9165
49 1 4.9111 2.8446 0.9051
50 1 2.7602 3.9275 0.9981
51 1 2.8787 3.2346 2.6467
52 1 -0.3806 2.1544 1.0084
53 1 0.2707 3.4074 2.0918
54 1 0.5042 3.5431 0.3325
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001035709651.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:07:21
Heat of formation + Delta-G solvation = 9.580345 kcal
Electronic energy + Delta-G solvation = -31153.466561 eV
Core-core repulsion = 27319.094451 eV
Total energy + Delta-G solvation = -3834.372110 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 1.73 seconds
Orbital eigenvalues (eV)
-42.03290 -40.80859 -39.19884 -37.14900 -34.57834 -34.14251 -33.70006 -32.02574
-31.85924 -29.18366 -28.66513 -27.11539 -26.53056 -25.21938 -24.36131 -23.72890
-23.09212 -22.41743 -21.34267 -20.42228 -18.76757 -18.63456 -17.94071 -17.37600
-16.87805 -16.77437 -16.25081 -16.09857 -15.94047 -15.73396 -15.58492 -15.10544
-14.76253 -14.49776 -14.31441 -14.16790 -14.09226 -13.91291 -13.75660 -13.58670
-13.26292 -13.09407 -13.08332 -12.92689 -12.82168 -12.60164 -12.41645 -12.35810
-12.19597 -12.14028 -12.08052 -11.73207 -11.67537 -11.62513 -11.56492 -11.38992
-11.14986 -10.89484 -10.81534 -10.69312 -9.61037 -9.43764 -8.86362 -7.86858
-5.20697 1.46339 1.48303 1.56029 1.56182 1.97750 2.48686 3.00632
3.32324 3.45981 3.46493 3.53500 3.59157 3.65789 3.88503 4.06637
4.12363 4.15474 4.20611 4.33215 4.33960 4.37186 4.41077 4.44369
4.53612 4.58332 4.64209 4.67120 4.71389 4.74439 4.77785 4.82427
4.85572 4.89571 4.91072 4.97154 4.99286 5.06880 5.11130 5.13242
5.14842 5.17851 5.24058 5.30402 5.34765 5.37614 5.50026 5.54007
5.58615 5.76879 5.88297 5.98017 6.07075 6.41396 6.93305 7.12443
7.63600 8.65647 9.28864
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.021128 B = 0.002710 C = 0.002601
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1324.932664 B =10330.259568 C =10760.825084
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.103 4.103
3 C 0.073 3.927
4 H 0.053 0.947
5 C -0.115 4.115
6 H 0.128 0.872
7 C 0.519 3.481
8 O -0.583 6.583
9 N -0.601 5.601
10 C 0.119 3.881
11 C -0.105 4.105
12 C -0.085 4.085
13 C 0.130 3.870
14 N -0.636 5.636
15 C -0.224 4.224
16 H 0.083 0.917
17 C -0.066 4.066
18 N -0.949 5.949
19 Si 0.974 3.026
20 H -0.290 1.290
21 H -0.267 1.267
22 H -0.295 1.295
23 C 0.153 3.847
24 C -0.088 4.088
25 C 0.113 3.887
26 C -0.115 4.115
27 C 0.032 3.968
28 N -0.512 5.512
29 C 0.010 3.990
30 H 0.063 0.937
31 H 0.041 0.959
32 H 0.062 0.938
33 H 0.064 0.936
34 H 0.078 0.922
35 H 0.082 0.918
36 H 0.081 0.919
37 H 0.059 0.941
38 H 0.080 0.920
39 H 0.041 0.959
40 H 0.051 0.949
41 H 0.246 0.754
42 H 0.041 0.959
43 H 0.008 0.992
44 H 0.063 0.937
45 H 0.061 0.939
46 H 0.111 0.889
47 H 0.080 0.920
48 H 0.108 0.892
49 H 0.076 0.924
50 H 0.026 0.974
51 H 0.098 0.902
52 H 0.084 0.916
53 H 0.077 0.923
54 H 0.013 0.987
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.493 -9.349 0.753 22.537
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.141 4.141
3 C -0.036 4.036
4 H 0.071 0.929
5 C -0.136 4.136
6 H 0.146 0.854
7 C 0.308 3.692
8 O -0.464 6.464
9 N -0.332 5.332
10 C -0.003 4.003
11 C -0.144 4.144
12 C -0.086 4.086
13 C 0.005 3.995
14 N -0.361 5.361
15 C -0.352 4.352
16 H 0.101 0.899
17 C -0.259 4.259
18 N -0.598 5.598
19 Si 0.803 3.197
20 H -0.218 1.218
21 H -0.191 1.191
22 H -0.222 1.222
23 C 0.027 3.973
24 C -0.126 4.126
25 C -0.009 4.009
26 C -0.153 4.153
27 C -0.096 4.096
28 N -0.236 5.236
29 C -0.138 4.138
30 H 0.082 0.918
31 H 0.061 0.939
32 H 0.081 0.919
33 H 0.083 0.917
34 H 0.096 0.904
35 H 0.101 0.899
36 H 0.099 0.901
37 H 0.077 0.923
38 H 0.098 0.902
39 H 0.058 0.942
40 H 0.069 0.931
41 H 0.055 0.945
42 H 0.060 0.940
43 H 0.026 0.974
44 H 0.082 0.918
45 H 0.080 0.920
46 H 0.129 0.871
47 H 0.099 0.901
48 H 0.126 0.874
49 H 0.094 0.906
50 H 0.045 0.955
51 H 0.116 0.884
52 H 0.103 0.897
53 H 0.096 0.904
54 H 0.032 0.968
Dipole moment (debyes) X Y Z Total
from point charges -20.689 -9.476 0.957 22.776
hybrid contribution 1.558 1.362 -0.641 2.167
sum -19.131 -8.114 0.315 20.783
Atomic orbital electron populations
1.21822 0.95407 1.01824 1.01589 1.21489 0.96615 0.93702 1.02306
1.22442 0.92391 0.97307 0.91423 0.92916 1.22239 0.97234 1.01607
0.92565 0.85428 1.20929 0.81711 0.79598 0.86943 1.90627 1.51463
1.51170 1.53151 1.48115 1.05526 1.53953 1.25603 1.21560 0.98130
0.93920 0.86712 1.21647 0.95427 0.97488 0.99817 1.21786 0.92821
0.97495 0.96506 1.22542 0.86276 0.97058 0.93623 1.45818 1.14800
1.21212 1.54305 1.19267 0.90521 1.06524 1.18903 0.89927 1.25563
1.02307 0.98282 0.99743 1.70026 1.36916 1.19941 1.32915 0.85158
0.80019 0.78018 0.76542 1.21761 1.19138 1.22202 1.22066 0.86416
0.90487 0.98335 1.21338 0.98194 0.97418 0.95689 1.21974 0.88786
0.95180 0.94974 1.22689 0.97382 0.99531 0.95692 1.23281 0.90449
0.93976 1.01900 1.64781 1.02565 1.26977 1.29232 1.22705 0.92788
0.97625 1.00715 0.91833 0.93939 0.91857 0.91697 0.90361 0.89941
0.90114 0.92266 0.90187 0.94170 0.93059 0.94467 0.94019 0.97401
0.91822 0.92002 0.87065 0.90146 0.87375 0.90556 0.95515 0.88357
0.89744 0.90438 0.96818
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.21 8.79 71.98 0.63 -1.58 16
2 C -0.10 -1.67 5.39 30.60 0.16 -1.51 16
3 C 0.07 1.48 2.20 45.06 0.10 1.58 16
4 H 0.05 1.39 5.91 -2.39 -0.01 1.38 16
5 C -0.11 -2.22 2.09 -10.66 -0.02 -2.25 16
6 H 0.13 1.93 7.36 -2.39 -0.02 1.92 16
7 C 0.52 13.29 7.00 87.66 0.61 13.90 16
8 O -0.58 -19.06 14.63 -3.06 -0.04 -19.10 16
9 N -0.60 -14.54 2.91 -818.37 -2.38 -16.92 16
10 C 0.12 2.99 6.34 86.43 0.55 3.54 16
11 C -0.10 -2.95 5.31 30.57 0.16 -2.79 16
12 C -0.08 -2.88 0.83 -52.60 -0.04 -2.92 16
13 C 0.13 4.87 7.63 83.32 0.64 5.51 16
14 N -0.64 -31.46 3.55 -738.74 -2.62 -34.08 16
15 C -0.22 -12.26 10.74 84.03 0.90 -11.35 16
16 H 0.08 4.32 7.84 -2.91 -0.02 4.30 16
17 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16
18 N -0.95 -56.57 11.44 21.65 0.25 -56.32 16
19 Si 0.97 45.08 29.56 68.60 2.03 47.11 16
20 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16
21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16
22 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16
23 C 0.15 7.06 6.71 83.22 0.56 7.62 16
24 C -0.09 -2.66 5.13 30.58 0.16 -2.51 16
25 C 0.11 2.51 5.33 86.44 0.46 2.97 16
26 C -0.11 -2.05 5.12 31.80 0.16 -1.88 16
27 C 0.03 0.61 6.56 86.65 0.57 1.18 16
28 N -0.51 -9.78 5.08 -884.11 -4.49 -14.26 16
29 C 0.01 0.18 9.09 127.69 1.16 1.34 16
30 H 0.06 0.92 6.22 -2.39 -0.01 0.91 16
31 H 0.04 0.69 8.13 -2.39 -0.02 0.67 16
32 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16
33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
34 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16
35 H 0.08 2.20 6.97 -2.38 -0.02 2.18 16
36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16
37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16
38 H 0.08 2.17 8.09 -2.39 -0.02 2.15 16
39 H 0.04 1.46 8.06 -2.39 -0.02 1.44 16
40 H 0.05 1.78 7.53 -2.39 -0.02 1.76 16
41 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16
42 H 0.04 2.21 6.85 -2.38 -0.02 2.19 16
43 H 0.01 0.39 8.09 -2.38 -0.02 0.37 16
44 H 0.06 2.31 7.95 -2.39 -0.02 2.29 16
45 H 0.06 1.86 7.20 -2.39 -0.02 1.84 16
46 H 0.11 1.93 4.70 -2.39 -0.01 1.92 16
47 H 0.08 1.71 7.61 -2.38 -0.02 1.69 16
48 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16
49 H 0.08 1.53 5.42 -2.39 -0.01 1.52 16
50 H 0.03 0.61 8.02 -2.39 -0.02 0.59 16
51 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16
52 H 0.08 1.30 5.40 -2.39 -0.01 1.29 16
53 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16
54 H 0.01 0.28 7.93 -2.39 -0.02 0.26 16
Total: -1.00 -68.44 396.96 0.84 -67.61
By element:
Atomic # 1 Polarization: 17.48 SS G_CDS: 0.87 Total: 18.35 kcal
Atomic # 6 Polarization: 0.40 SS G_CDS: 7.23 Total: 7.63 kcal
Atomic # 7 Polarization: -112.34 SS G_CDS: -9.24 Total: -121.59 kcal
Atomic # 8 Polarization: -19.06 SS G_CDS: -0.04 Total: -19.10 kcal
Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal
Total: -68.44 0.84 -67.61 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001035709651.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.186 kcal
(2) G-P(sol) polarization free energy of solvation -68.441 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.744 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.605 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.580 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.73 seconds