Wall clock time and date at job start Tue Mar 31 2020 19:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46130 * 2 1 4 4 C 1.53038 * 109.45278 * 119.96686 * 2 1 3 5 5 C 1.53120 * 109.27843 * 179.19444 * 4 2 1 6 6 H 1.08989 * 109.52487 * 62.24870 * 5 4 2 7 7 C 1.50702 * 109.52294 * 182.44553 * 5 4 2 8 8 O 1.21279 * 119.99934 * 24.29266 * 7 5 4 9 9 N 1.34776 * 119.99740 * 204.29806 * 7 5 4 10 10 C 1.46888 * 120.46717 * 4.37352 * 9 7 5 11 11 C 1.52858 * 109.01601 * 235.49039 * 10 9 7 12 12 C 1.52667 * 109.17648 * 307.81738 * 11 10 9 13 13 C 1.53482 * 113.62172 * 188.99248 * 12 11 10 14 14 N 1.47668 * 85.98868 * 137.70921 * 13 12 11 15 15 C 1.36938 * 134.45919 * 155.66146 * 14 13 12 16 16 H 1.07995 * 120.00367 * 180.02562 * 15 14 13 17 17 C 1.38822 * 119.99805 * 0.02920 * 15 14 13 18 18 N 1.31615 * 119.99918 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 119.99889 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47396 * 90.00054 * 19 17 15 21 21 H 1.48501 * 109.46969 * 209.99720 * 19 17 15 22 22 H 1.48497 * 109.47554 * 329.99611 * 19 17 15 23 23 C 1.47665 * 91.08467 * 335.67968 * 14 13 12 24 24 C 1.52673 * 113.18779 * 57.46341 * 12 11 10 25 25 C 1.46878 * 120.46510 * 184.65091 * 9 7 5 26 26 C 1.53122 * 109.15733 * 302.34449 * 5 4 2 27 27 C 1.53040 * 109.28103 * 57.65524 * 26 5 4 28 28 N 1.46845 * 109.46299 * 240.01585 * 2 1 3 29 29 C 1.46898 * 110.99802 * 54.15712 * 28 2 1 30 30 H 1.08995 * 109.47207 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47242 * 299.98454 * 1 2 3 32 32 H 1.09000 * 109.47110 * 59.98386 * 1 2 3 33 33 H 1.08992 * 109.50326 * 59.24891 * 4 2 1 34 34 H 1.08998 * 109.50497 * 299.12874 * 4 2 1 35 35 H 1.09002 * 109.58706 * 355.31433 * 10 9 7 36 36 H 1.09003 * 109.58708 * 115.75065 * 10 9 7 37 37 H 1.09002 * 109.60610 * 187.84007 * 11 10 9 38 38 H 1.08999 * 109.38619 * 67.66562 * 11 10 9 39 39 H 1.08996 * 113.79591 * 251.97864 * 13 12 11 40 40 H 1.09003 * 113.79301 * 23.43934 * 13 12 11 41 41 H 0.96998 * 120.00311 * 180.02562 * 18 17 15 42 42 H 1.09001 * 113.79408 * 270.04456 * 23 14 13 43 43 H 1.09007 * 113.89376 * 138.59115 * 23 14 13 44 44 H 1.08997 * 109.53382 * 182.52045 * 24 12 11 45 45 H 1.09002 * 109.58717 * 62.33507 * 24 12 11 46 46 H 1.08992 * 109.59274 * 244.25381 * 25 9 7 47 47 H 1.09002 * 109.59237 * 4.54454 * 25 9 7 48 48 H 1.09002 * 109.50666 * 177.59588 * 26 5 4 49 49 H 1.09003 * 109.50352 * 297.71666 * 26 5 4 50 50 H 1.09004 * 109.45766 * 60.83379 * 27 26 5 51 51 H 1.08996 * 109.46532 * 180.81292 * 27 26 5 52 52 H 1.09003 * 109.46990 * 188.16292 * 29 28 2 53 53 H 1.08994 * 109.47433 * 308.16143 * 29 28 2 54 54 H 1.08997 * 109.47401 * 68.16413 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7208 1.2501 5 6 3.5707 -0.7361 1.2360 6 1 3.9455 0.2868 1.2675 7 6 4.0779 -1.4969 2.4339 8 8 3.3747 -2.3300 2.9653 9 7 5.3127 -1.2513 2.9148 10 6 6.1361 -0.1791 2.3403 11 6 7.4739 -0.7655 1.8899 12 6 8.0952 -1.5439 3.0470 13 6 9.5386 -1.9930 2.7812 14 7 9.8128 -1.5824 4.1729 15 6 10.7500 -1.9304 5.1087 16 1 10.7345 -1.4704 6.0856 17 6 11.7202 -2.8746 4.8014 18 7 11.7389 -3.4356 3.6109 19 14 12.9983 -3.3499 6.0780 20 1 12.4945 -4.4929 6.8812 21 1 14.2577 -3.7415 5.3956 22 1 13.2589 -2.1933 6.9722 23 6 8.6709 -0.6464 4.1514 24 6 7.1949 -2.6588 3.5735 25 6 5.8564 -2.0559 4.0167 26 6 4.0546 -1.4191 -0.0462 27 6 3.4865 -0.6781 -1.2588 28 7 2.0193 -0.6919 -1.1992 29 6 1.4375 -0.1108 -2.4165 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5136 0.8901 32 1 -0.3633 0.5141 -0.8898 33 1 1.6655 -1.7445 1.2579 34 1 1.6893 -0.1979 2.1400 35 1 5.6227 0.2564 1.4830 36 1 6.3121 0.5896 3.0928 37 1 8.1444 0.0403 1.5911 38 1 7.3095 -1.4358 1.0463 39 1 9.6414 -3.0646 2.6106 40 1 10.0563 -1.3904 2.0349 41 1 12.4165 -4.0956 3.3963 42 1 8.9306 0.3565 3.8123 43 1 8.0826 -0.6463 5.0691 44 1 7.6750 -3.1443 4.4232 45 1 7.0215 -3.3914 2.7853 46 1 6.0123 -1.4223 4.8897 47 1 5.1578 -2.8549 4.2652 48 1 5.1437 -1.3952 -0.0826 49 1 3.7121 -2.4538 -0.0589 50 1 3.8405 0.3529 -1.2529 51 1 3.8174 -1.1705 -2.1732 52 1 1.6998 -0.7287 -3.2753 53 1 0.3530 -0.0690 -2.3167 54 1 1.8281 0.8965 -2.5608 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035778591.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:17 Heat of formation + Delta-G solvation = 0.899364 kcal Electronic energy + Delta-G solvation = -30757.207410 eV Core-core repulsion = 26922.458864 eV Total energy + Delta-G solvation = -3834.748546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.82577 -40.60899 -39.41769 -37.07564 -34.87282 -34.33608 -33.31541 -32.15222 -31.98306 -28.88987 -28.37222 -27.42711 -26.71145 -25.24038 -24.68687 -23.79974 -23.07354 -22.52931 -20.88965 -20.22427 -18.80933 -18.69295 -17.94249 -17.11405 -16.86774 -16.57454 -16.36094 -16.12236 -16.08029 -15.64691 -15.42271 -15.14031 -14.99057 -14.96059 -14.48428 -14.04897 -13.97618 -13.70001 -13.64449 -13.51379 -13.13213 -13.05810 -12.92576 -12.89942 -12.81585 -12.69896 -12.62539 -12.50371 -12.19905 -12.16632 -12.10024 -11.78921 -11.65423 -11.59677 -11.52096 -11.30955 -11.12088 -10.99274 -10.80907 -10.53323 -9.57982 -9.17681 -8.86453 -7.88712 -5.20331 1.43807 1.45444 1.53633 1.62045 2.03693 2.47943 3.00114 3.32070 3.43173 3.44716 3.62660 3.74737 3.83869 3.92366 3.96835 4.08356 4.14200 4.22083 4.28432 4.35430 4.41262 4.47069 4.52766 4.56158 4.61308 4.69832 4.70634 4.72639 4.77033 4.81066 4.84981 4.88148 4.92109 4.94540 4.96144 4.99583 5.06127 5.09532 5.15242 5.16365 5.20258 5.24333 5.30086 5.32215 5.37671 5.45949 5.56734 5.61464 5.77966 5.98333 6.22139 6.23721 6.48335 6.95106 7.19997 7.63994 8.61255 9.28050 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.029410 B = 0.002395 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.839824 B =11690.080539 C =12093.303517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.086 3.914 3 H 0.052 0.948 4 C -0.090 4.090 5 C -0.100 4.100 6 H 0.117 0.883 7 C 0.516 3.484 8 O -0.588 6.588 9 N -0.604 5.604 10 C 0.109 3.891 11 C -0.112 4.112 12 C -0.081 4.081 13 C 0.168 3.832 14 N -0.641 5.641 15 C -0.228 4.228 16 H 0.080 0.920 17 C -0.070 4.070 18 N -0.954 5.954 19 Si 0.974 3.026 20 H -0.288 1.288 21 H -0.295 1.295 22 H -0.269 1.269 23 C 0.129 3.871 24 C -0.088 4.088 25 C 0.124 3.876 26 C -0.102 4.102 27 C 0.063 3.937 28 N -0.558 5.558 29 C 0.020 3.980 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.018 0.982 41 H 0.246 0.754 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.053 0.947 50 H 0.051 0.949 51 H 0.085 0.915 52 H 0.070 0.930 53 H 0.079 0.921 54 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.688 12.389 -12.057 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 H 0.070 0.930 4 C -0.128 4.128 5 C -0.121 4.121 6 H 0.134 0.866 7 C 0.306 3.694 8 O -0.468 6.468 9 N -0.335 5.335 10 C -0.012 4.012 11 C -0.151 4.151 12 C -0.082 4.082 13 C 0.043 3.957 14 N -0.367 5.367 15 C -0.357 4.357 16 H 0.098 0.902 17 C -0.262 4.262 18 N -0.603 5.603 19 Si 0.802 3.198 20 H -0.215 1.215 21 H -0.222 1.222 22 H -0.194 1.194 23 C 0.005 3.995 24 C -0.126 4.126 25 C 0.001 3.999 26 C -0.140 4.140 27 C -0.065 4.065 28 N -0.283 5.283 29 C -0.127 4.127 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.036 0.964 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.103 0.897 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.103 0.897 52 H 0.089 0.911 53 H 0.097 0.903 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -21.930 11.334 -11.597 27.274 hybrid contribution 1.742 -0.150 0.834 1.937 sum -20.188 11.184 -10.763 25.465 Atomic orbital electron populations 1.21917 0.93468 1.02335 1.02679 1.21594 0.96108 0.95274 0.89273 0.93031 1.21438 0.92529 1.01401 0.97468 1.21436 0.97629 1.00833 0.92229 0.86550 1.21181 0.80665 0.82664 0.84873 1.90653 1.57346 1.37129 1.61695 1.48208 1.15272 1.34853 1.35210 1.21926 0.90647 0.88582 1.00054 1.21725 0.96504 1.00156 0.96718 1.22079 0.93941 0.96003 0.96150 1.22174 0.90240 0.97569 0.85710 1.46337 1.33150 1.46080 1.11111 1.19388 1.05283 1.17617 0.93405 0.90190 1.25568 1.01545 1.00256 0.98874 1.70005 1.37071 1.31713 1.21542 0.85144 0.78287 0.78161 0.78161 1.21522 1.22196 1.19388 1.22773 0.87059 0.93100 0.96568 1.21333 0.94184 0.96744 1.00359 1.21409 0.93859 0.95386 0.89247 1.21518 1.00942 0.99471 0.92069 1.22056 0.86883 0.99503 0.98074 1.61919 1.07630 1.55935 1.02845 1.22479 1.00910 0.97709 0.91637 0.92822 0.91415 0.91029 0.92561 0.91276 0.86619 0.89863 0.89102 0.91126 0.94994 0.96426 0.94479 0.93088 0.93446 0.92963 0.92781 0.90876 0.90732 0.89739 0.92796 0.93106 0.89656 0.91142 0.90280 0.94974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.79 71.98 0.63 -1.16 16 2 C 0.09 1.22 2.44 44.94 0.11 1.33 16 3 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 4 C -0.09 -1.68 4.23 30.65 0.13 -1.55 16 5 C -0.10 -1.80 1.75 -11.46 -0.02 -1.82 16 6 H 0.12 1.47 6.27 -2.39 -0.02 1.45 16 7 C 0.52 13.43 6.81 87.66 0.60 14.02 16 8 O -0.59 -20.42 15.45 -3.03 -0.05 -20.46 16 9 N -0.60 -14.80 2.95 -819.48 -2.42 -17.21 16 10 C 0.11 2.00 6.07 86.26 0.52 2.52 16 11 C -0.11 -2.64 5.24 30.44 0.16 -2.48 16 12 C -0.08 -2.73 0.77 -52.04 -0.04 -2.77 16 13 C 0.17 7.82 6.64 86.31 0.57 8.39 16 14 N -0.64 -32.30 3.53 -722.65 -2.55 -34.86 16 15 C -0.23 -12.85 10.70 84.04 0.90 -11.95 16 16 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 17 C -0.07 -4.02 5.50 84.87 0.47 -3.56 16 18 N -0.95 -58.30 11.39 21.65 0.25 -58.05 16 19 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C 0.13 4.85 7.72 86.32 0.67 5.52 16 24 C -0.09 -3.04 5.22 30.60 0.16 -2.88 16 25 C 0.12 3.64 6.29 86.42 0.54 4.18 16 26 C -0.10 -1.73 5.26 30.65 0.16 -1.57 16 27 C 0.06 0.84 5.46 86.33 0.47 1.31 16 28 N -0.56 -8.28 4.75 -897.16 -4.26 -12.54 16 29 C 0.02 0.22 9.30 127.69 1.19 1.41 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.68 6.15 -2.39 -0.01 0.67 16 33 H 0.06 1.38 7.79 -2.39 -0.02 1.37 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.12 1.37 5.16 -2.39 -0.01 1.36 16 36 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 37 H 0.09 1.94 8.12 -2.39 -0.02 1.92 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.03 1.72 7.12 -2.39 -0.02 1.70 16 40 H 0.02 0.84 8.09 -2.39 -0.02 0.82 16 41 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.05 1.75 8.07 -2.39 -0.02 1.73 16 43 H 0.05 1.71 7.41 -2.38 -0.02 1.69 16 44 H 0.05 2.16 8.01 -2.39 -0.02 2.14 16 45 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.07 2.06 7.49 -2.39 -0.02 2.04 16 47 H 0.07 2.41 7.00 -2.39 -0.02 2.39 16 48 H 0.08 1.29 7.88 -2.39 -0.02 1.27 16 49 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 51 H 0.09 1.06 8.12 -2.39 -0.02 1.04 16 52 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.08 0.76 5.75 -2.39 -0.01 0.74 16 54 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -73.11 401.20 1.08 -72.03 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.85 Total: 13.68 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 7.22 Total: 8.94 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -8.98 Total: -122.66 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.05 Total: -20.46 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -73.11 1.08 -72.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035778591.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.931 kcal (2) G-P(sol) polarization free energy of solvation -73.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds