Wall clock time and date at job start Tue Mar 31 2020 19:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.42313 * 2 1 4 4 C 1.54910 * 110.37412 * 122.31117 * 2 1 3 5 5 C 1.55137 * 101.65360 * 155.90264 * 4 2 1 6 6 C 1.54317 * 103.01730 * 324.34577 * 5 4 2 7 7 H 1.09000 * 109.88816 * 262.71292 * 6 5 4 8 8 C 1.53002 * 109.88661 * 141.69424 * 6 5 4 9 9 N 1.47439 * 107.23611 * 22.28342 * 6 5 4 10 10 C 1.46903 * 110.99799 * 123.25420 * 9 6 5 11 11 C 1.50694 * 109.47463 * 287.28625 * 10 9 6 12 12 O 1.21281 * 119.99864 * 6.49641 * 11 10 9 13 13 N 1.34780 * 119.99963 * 186.50462 * 11 10 9 14 14 C 1.46880 * 120.46471 * 359.71748 * 13 11 10 15 15 C 1.52862 * 109.01396 * 235.49214 * 14 13 11 16 16 C 1.52677 * 109.17983 * 307.81694 * 15 14 13 17 17 C 1.53476 * 113.62207 * 188.99400 * 16 15 14 18 18 N 1.47667 * 85.98955 * 137.71078 * 17 16 15 19 19 C 1.36932 * 134.46166 * 155.69694 * 18 17 16 20 20 H 1.08003 * 120.00292 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99844 * 359.97276 * 19 18 17 22 22 N 1.31617 * 120.00205 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00095 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46936 * 60.00091 * 23 21 19 25 25 H 1.48503 * 109.47229 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47025 * 300.00128 * 23 21 19 27 27 C 1.47677 * 91.08260 * 335.67866 * 18 17 16 28 28 C 1.52671 * 113.18106 * 57.46147 * 16 15 14 29 29 C 1.46881 * 120.46524 * 179.97438 * 13 11 10 30 30 H 1.08996 * 109.47608 * 294.83815 * 1 2 3 31 31 H 1.08998 * 109.47206 * 54.84212 * 1 2 3 32 32 H 1.09004 * 109.47050 * 174.83789 * 1 2 3 33 33 H 1.09001 * 110.98928 * 37.80979 * 4 2 1 34 34 H 1.09001 * 110.98786 * 273.99154 * 4 2 1 35 35 H 1.09001 * 110.70861 * 82.72829 * 5 4 2 36 36 H 1.09007 * 110.70472 * 205.78736 * 5 4 2 37 37 H 1.08997 * 109.47349 * 68.20823 * 8 6 5 38 38 H 1.09004 * 109.47123 * 188.20473 * 8 6 5 39 39 H 1.09001 * 109.46854 * 308.20345 * 8 6 5 40 40 H 1.09002 * 109.46817 * 47.28905 * 10 9 6 41 41 H 1.09002 * 109.47088 * 167.28221 * 10 9 6 42 42 H 1.08997 * 109.58993 * 355.31651 * 14 13 11 43 43 H 1.08997 * 109.58898 * 115.75831 * 14 13 11 44 44 H 1.09006 * 109.60626 * 187.84372 * 15 14 13 45 45 H 1.08996 * 109.38762 * 67.66770 * 15 14 13 46 46 H 1.09000 * 113.78893 * 251.97833 * 17 16 15 47 47 H 1.09003 * 113.79562 * 23.44358 * 17 16 15 48 48 H 0.97002 * 120.00349 * 180.02562 * 22 21 19 49 49 H 1.08994 * 113.78820 * 270.04934 * 27 18 17 50 50 H 1.09002 * 113.78892 * 138.58377 * 27 18 17 51 51 H 1.08993 * 109.53024 * 182.51992 * 28 16 15 52 52 H 1.08999 * 109.52832 * 62.30239 * 28 16 15 53 53 H 1.08995 * 109.59126 * 244.25058 * 29 13 11 54 54 H 1.09005 * 109.58824 * 4.68307 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7762 1.2273 5 6 3.4786 -1.1994 0.7359 6 6 3.2535 -1.4807 -0.7646 7 1 3.1085 -2.5492 -0.9240 8 6 4.4583 -0.9932 -1.5719 9 7 2.0447 -0.7409 -1.1713 10 6 2.3358 0.1716 -2.2851 11 6 3.1419 1.3402 -1.7796 12 8 3.5448 1.3494 -0.6357 13 7 3.4151 2.3751 -2.5987 14 6 2.9374 2.3717 -3.9876 15 6 4.1297 2.5631 -4.9248 16 6 4.9184 3.7952 -4.4879 17 6 6.0100 4.2115 -5.4832 18 7 5.5619 5.5966 -5.2362 19 6 6.1505 6.8284 -5.3422 20 1 5.5903 7.7178 -5.0941 21 6 7.4673 6.9340 -5.7684 22 7 8.1500 5.8502 -6.0711 23 14 8.2702 8.6144 -5.9136 24 1 8.2682 9.2803 -4.5863 25 1 9.6694 8.4555 -6.3851 26 1 7.5114 9.4433 -6.8843 27 6 4.2242 5.1211 -4.8295 28 6 5.4058 3.7156 -3.0433 29 6 4.1995 3.5195 -2.1166 30 1 -0.3634 0.4316 0.9325 31 1 -0.3633 0.5917 -0.8402 32 1 -0.3633 -1.0235 -0.0925 33 1 1.4515 -1.6488 1.4398 34 1 2.1388 -0.1270 2.1001 35 1 4.1941 -0.3887 0.8730 36 1 3.8132 -2.0986 1.2534 37 1 5.3242 -1.6146 -1.3435 38 1 4.2337 -1.0604 -2.6364 39 1 4.6754 0.0426 -1.3111 40 1 2.9038 -0.3581 -3.0498 41 1 1.4005 0.5332 -2.7125 42 1 2.4528 1.4199 -4.2051 43 1 2.2282 3.1868 -4.1321 44 1 3.7738 2.7015 -5.9459 45 1 4.7718 1.6837 -4.8777 46 1 7.0228 4.0084 -5.1353 47 1 5.8313 3.8665 -6.5017 48 1 9.0703 5.9239 -6.3686 49 1 3.5148 5.0465 -5.6536 50 1 3.8178 5.6410 -3.9620 51 1 5.9203 4.6400 -2.7809 52 1 6.0894 2.8735 -2.9353 53 1 3.5809 4.4168 -2.1267 54 1 4.5461 3.3235 -1.1018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035858915.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:39:57 Heat of formation + Delta-G solvation = 34.823863 kcal Electronic energy + Delta-G solvation = -31461.695346 eV Core-core repulsion = 27628.417877 eV Total energy + Delta-G solvation = -3833.277469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.26104 -40.92804 -38.99312 -36.94290 -34.45268 -33.89494 -33.19609 -32.10401 -31.93328 -29.03115 -28.76064 -27.44329 -26.68356 -24.98917 -24.66109 -24.11685 -22.91508 -21.81500 -21.15111 -20.00610 -18.84374 -18.70006 -18.13312 -17.40284 -16.98085 -16.81400 -16.66681 -16.11103 -15.69597 -15.56951 -15.37597 -15.12381 -14.85651 -14.58459 -14.11244 -13.99920 -13.89296 -13.77386 -13.71688 -13.62399 -13.17492 -13.07163 -12.90257 -12.80493 -12.64606 -12.51270 -12.49150 -12.28241 -12.23172 -12.12912 -11.80684 -11.65840 -11.64911 -11.53465 -11.44298 -11.25594 -11.12337 -10.98918 -10.82105 -10.80289 -9.56847 -9.08049 -8.87200 -7.89358 -5.21145 1.43076 1.45903 1.51949 1.61166 2.07084 2.47352 2.97499 3.31208 3.42859 3.58515 3.63538 3.76883 3.82799 3.97922 4.00432 4.10843 4.20765 4.30514 4.33114 4.37037 4.44813 4.49441 4.52549 4.62777 4.65231 4.69078 4.71206 4.77012 4.79598 4.82019 4.88527 4.91717 4.92912 4.95873 5.05475 5.05805 5.07146 5.14881 5.21869 5.22185 5.27336 5.29235 5.30384 5.35923 5.49360 5.53109 5.59718 5.62973 5.77765 5.97375 6.06108 6.09486 6.51244 6.94061 7.20654 7.63285 8.60532 9.27119 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.026243 B = 0.002602 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.689155 B =10758.012353 C =10862.516584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.044 3.956 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.129 4.129 6 C 0.076 3.924 7 H 0.090 0.910 8 C -0.193 4.193 9 N -0.497 5.497 10 C 0.023 3.977 11 C 0.486 3.514 12 O -0.562 6.562 13 N -0.602 5.602 14 C 0.111 3.889 15 C -0.112 4.112 16 C -0.081 4.081 17 C 0.168 3.832 18 N -0.640 5.640 19 C -0.231 4.231 20 H 0.080 0.920 21 C -0.068 4.068 22 N -0.954 5.954 23 Si 0.974 3.026 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.277 1.277 27 C 0.130 3.870 28 C -0.087 4.087 29 C 0.126 3.874 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.031 0.969 47 H 0.017 0.983 48 H 0.246 0.754 49 H 0.051 0.949 50 H 0.047 0.953 51 H 0.049 0.951 52 H 0.052 0.948 53 H 0.070 0.930 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.660 -16.603 9.218 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.064 4.064 3 H 0.090 0.910 4 C -0.153 4.153 5 C -0.167 4.167 6 C -0.032 4.032 7 H 0.108 0.892 8 C -0.250 4.250 9 N -0.220 5.220 10 C -0.109 4.109 11 C 0.276 3.724 12 O -0.444 6.444 13 N -0.335 5.335 14 C -0.011 4.011 15 C -0.151 4.151 16 C -0.082 4.082 17 C 0.042 3.958 18 N -0.366 5.366 19 C -0.360 4.360 20 H 0.098 0.902 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.802 3.198 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.204 1.204 27 C 0.005 3.995 28 C -0.125 4.125 29 C 0.003 3.997 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.034 0.966 48 H 0.055 0.945 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.068 0.932 52 H 0.071 0.929 53 H 0.088 0.912 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.613 -16.728 9.564 25.442 hybrid contribution 2.005 1.954 -0.216 2.808 sum -14.608 -14.774 9.348 22.783 Atomic orbital electron populations 1.21687 0.93516 1.02209 1.01370 1.23047 0.95658 0.98475 0.89217 0.91010 1.22583 0.95874 0.99780 0.97031 1.22735 0.97558 1.00877 0.95544 1.22297 0.88338 0.98451 0.94130 0.89225 1.22880 0.98411 1.03226 1.00527 1.64110 1.27256 1.23401 1.07225 1.22770 1.00891 0.90425 0.96784 1.22222 0.80057 0.84410 0.85716 1.90607 1.53882 1.80189 1.19682 1.48357 1.52781 1.19304 1.13029 1.21868 0.95901 1.04807 0.78541 1.21713 0.96950 0.96504 0.99957 1.22088 0.96476 0.94755 0.94872 1.22176 0.96146 0.83196 0.94266 1.46330 1.10299 1.01997 1.77984 1.19362 0.94834 0.84641 1.37156 0.90203 1.25559 0.97522 1.00544 1.02467 1.70001 1.09694 1.28133 1.52462 0.85223 0.77066 0.79493 0.78005 1.20418 1.22191 1.20359 1.22771 0.88019 0.91851 0.96812 1.21321 0.96987 1.00648 0.93551 1.21376 0.92112 0.88653 0.97608 0.92202 0.92857 0.91932 0.90407 0.91826 0.92794 0.90809 0.92531 0.91250 0.91632 0.85532 0.86061 0.86453 0.89902 0.89276 0.91328 0.95068 0.96572 0.94476 0.93158 0.93459 0.93229 0.92926 0.91157 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.59 71.98 0.69 -1.37 16 2 C 0.04 0.86 2.41 45.38 0.11 0.97 16 3 H 0.07 1.81 4.69 -4.94 -0.02 1.79 16 4 C -0.11 -2.18 6.49 31.98 0.21 -1.97 16 5 C -0.13 -2.63 5.94 31.77 0.19 -2.44 16 6 C 0.08 1.45 3.72 45.26 0.17 1.62 16 7 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 8 C -0.19 -3.95 7.71 71.98 0.56 -3.40 16 9 N -0.50 -9.20 5.07 -840.32 -4.26 -13.46 16 10 C 0.02 0.37 3.96 85.55 0.34 0.71 16 11 C 0.49 10.84 5.14 87.65 0.45 11.29 16 12 O -0.56 -15.90 9.05 -3.03 -0.03 -15.93 16 13 N -0.60 -13.35 2.95 -819.42 -2.42 -15.77 16 14 C 0.11 1.89 6.15 86.26 0.53 2.42 16 15 C -0.11 -2.60 5.24 30.44 0.16 -2.44 16 16 C -0.08 -2.71 0.77 -52.04 -0.04 -2.75 16 17 C 0.17 7.77 6.64 86.31 0.57 8.34 16 18 N -0.64 -32.18 3.53 -722.70 -2.55 -34.73 16 19 C -0.23 -13.01 10.70 84.03 0.90 -12.11 16 20 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 21 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 22 N -0.95 -58.18 11.39 21.65 0.25 -57.93 16 23 Si 0.97 46.29 29.55 68.60 2.03 48.31 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 27 C 0.13 4.84 7.73 86.32 0.67 5.50 16 28 C -0.09 -2.92 5.22 30.61 0.16 -2.76 16 29 C 0.13 3.46 6.30 86.43 0.54 4.01 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.08 1.28 8.06 -2.39 -0.02 1.27 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 1.39 6.79 -2.39 -0.02 1.37 16 36 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.22 5.90 -2.39 -0.01 1.20 16 39 H 0.07 1.71 4.16 -2.39 -0.01 1.70 16 40 H 0.13 1.72 5.57 -2.39 -0.01 1.71 16 41 H 0.12 1.48 7.58 -2.39 -0.02 1.46 16 42 H 0.12 1.21 5.90 -2.39 -0.01 1.20 16 43 H 0.08 1.31 8.07 -2.39 -0.02 1.29 16 44 H 0.09 1.91 8.12 -2.38 -0.02 1.89 16 45 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.03 1.68 7.12 -2.39 -0.02 1.66 16 47 H 0.02 0.78 8.09 -2.39 -0.02 0.76 16 48 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 49 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 50 H 0.05 1.69 7.41 -2.39 -0.02 1.67 16 51 H 0.05 2.02 8.01 -2.39 -0.02 2.00 16 52 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 53 H 0.07 1.89 7.49 -2.39 -0.02 1.87 16 54 H 0.08 2.29 6.98 -2.38 -0.02 2.27 16 Total: -1.00 -69.37 389.49 0.55 -68.82 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.86 Total: 18.51 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 6.67 Total: 2.16 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -8.98 Total: -121.88 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.03 Total: -15.93 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -69.37 0.55 -68.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035858915.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.646 kcal (2) G-P(sol) polarization free energy of solvation -69.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds