Wall clock time and date at job start Tue Mar 31 2020 19:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.41687 * 2 1 4 4 C 1.54907 * 110.37094 * 237.68430 * 2 1 3 5 5 C 1.55136 * 101.65111 * 204.09784 * 4 2 1 6 6 C 1.54322 * 103.01922 * 35.65699 * 5 4 2 7 7 H 1.08997 * 110.02306 * 97.19309 * 6 5 4 8 8 C 1.52995 * 109.89020 * 218.30667 * 6 5 4 9 9 N 1.47443 * 107.22965 * 337.71605 * 6 5 4 10 10 C 1.46902 * 110.99621 * 236.74174 * 9 6 5 11 11 C 1.50695 * 109.47511 * 72.87049 * 10 9 6 12 12 O 1.21290 * 119.99760 * 353.18079 * 11 10 9 13 13 N 1.34771 * 120.00422 * 173.17535 * 11 10 9 14 14 C 1.46900 * 120.46649 * 180.02562 * 13 11 10 15 15 C 1.53354 * 108.74314 * 124.34188 * 14 13 11 16 16 C 1.52562 * 109.12160 * 52.26545 * 15 14 13 17 17 C 1.52960 * 114.06316 * 75.53902 * 16 15 14 18 18 N 1.47159 * 87.85148 * 139.43864 * 17 16 15 19 19 C 1.36938 * 136.00063 * 153.33536 * 18 17 16 20 20 H 1.08004 * 120.00060 * 3.05314 * 19 18 17 21 21 C 1.38809 * 120.00338 * 183.04677 * 19 18 17 22 22 N 1.31621 * 119.99663 * 352.75654 * 21 19 18 23 23 Si 1.86796 * 120.00414 * 172.76235 * 21 19 18 24 24 H 1.48502 * 109.47104 * 275.01747 * 23 21 19 25 25 H 1.48497 * 109.47088 * 35.01424 * 23 21 19 26 26 H 1.48497 * 109.47419 * 155.01735 * 23 21 19 27 27 C 1.47171 * 88.00092 * 333.59215 * 18 17 16 28 28 C 1.52557 * 113.43206 * 302.66316 * 16 15 14 29 29 C 1.46883 * 120.46107 * 359.97438 * 13 11 10 30 30 H 1.09004 * 109.46788 * 302.80121 * 1 2 3 31 31 H 1.08997 * 109.47224 * 62.80161 * 1 2 3 32 32 H 1.09002 * 109.47055 * 182.80252 * 1 2 3 33 33 H 1.09004 * 110.98535 * 86.01025 * 4 2 1 34 34 H 1.08995 * 110.99130 * 322.19600 * 4 2 1 35 35 H 1.08994 * 110.71344 * 277.27168 * 5 4 2 36 36 H 1.09006 * 110.70638 * 154.03384 * 5 4 2 37 37 H 1.08997 * 109.47171 * 170.46902 * 8 6 5 38 38 H 1.09005 * 109.47239 * 290.46820 * 8 6 5 39 39 H 1.09009 * 109.46955 * 50.46727 * 8 6 5 40 40 H 1.09004 * 109.47131 * 312.87334 * 10 9 6 41 41 H 1.09002 * 109.47228 * 192.87687 * 10 9 6 42 42 H 1.09006 * 109.58824 * 4.56534 * 14 13 11 43 43 H 1.09002 * 109.59049 * 244.12769 * 14 13 11 44 44 H 1.08992 * 109.53011 * 292.37004 * 15 14 13 45 45 H 1.08996 * 109.52641 * 172.15283 * 15 14 13 46 46 H 1.08998 * 113.49064 * 24.69408 * 17 16 15 47 47 H 1.08993 * 113.54472 * 254.19234 * 17 16 15 48 48 H 0.97004 * 119.99541 * 179.97438 * 22 21 19 49 49 H 1.08998 * 113.48844 * 141.16069 * 27 18 17 50 50 H 1.09001 * 113.48832 * 271.66537 * 27 18 17 51 51 H 1.08997 * 109.52532 * 177.22018 * 28 16 15 52 52 H 1.08995 * 109.52652 * 297.43034 * 28 16 15 53 53 H 1.08993 * 109.59434 * 355.42106 * 29 13 11 54 54 H 1.09002 * 109.59669 * 115.86867 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7763 -1.2273 5 6 3.4786 -1.1995 -0.7358 6 6 3.2536 -1.4807 0.7648 7 1 3.1066 -2.5485 0.9265 8 6 4.4583 -0.9932 1.5721 9 7 2.0447 -0.7408 1.1713 10 6 2.3358 0.1717 2.2850 11 6 3.1388 1.3421 1.7789 12 8 3.5448 1.3501 0.6360 13 7 3.4057 2.3801 2.5960 14 6 4.1871 3.5265 2.1130 15 6 3.3707 4.8062 2.3309 16 6 2.9135 4.8658 3.7852 17 6 4.0176 5.2523 4.7707 18 7 3.0251 6.0829 5.4712 19 6 2.8493 6.5394 6.7502 20 1 3.5890 6.3238 7.5070 21 6 1.7204 7.2794 7.0741 22 7 0.8916 7.6641 6.1267 23 14 1.3776 7.7295 8.8543 24 1 0.6610 6.6111 9.5184 25 1 2.6612 7.9817 9.5571 26 1 0.5380 8.9534 8.9027 27 6 2.3008 6.2023 4.1956 28 6 2.0937 3.6527 4.2136 29 6 2.9185 2.3814 3.9817 30 1 -0.3633 0.5567 0.8639 31 1 -0.3633 0.4697 -0.9140 32 1 -0.3633 -1.0265 0.0502 33 1 2.1388 -0.1271 -2.1001 34 1 1.4515 -1.6488 -1.4397 35 1 4.1942 -0.3889 -0.8729 36 1 3.8119 -2.1005 -1.2509 37 1 4.2251 -1.0382 2.6359 38 1 5.3182 -1.6292 1.3615 39 1 4.6900 0.0350 1.2940 40 1 2.9062 -0.3572 3.0486 41 1 1.4005 0.5312 2.7142 42 1 4.3977 3.4036 1.0506 43 1 5.1229 3.5908 2.6682 44 1 2.5000 4.7990 1.6752 45 1 3.9892 5.6754 2.1075 46 1 4.8233 5.8288 4.3162 47 1 4.3819 4.4155 5.3665 48 1 0.1026 8.1809 6.3531 49 1 1.2171 6.1658 4.3063 50 1 2.6349 7.0398 3.5831 51 1 1.8435 3.7370 5.2711 52 1 1.1781 3.6051 3.6242 53 1 2.2933 1.5046 4.1501 54 1 3.7658 2.3659 4.6672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035858918.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:00 Heat of formation + Delta-G solvation = 38.503922 kcal Electronic energy + Delta-G solvation = -31470.002470 eV Core-core repulsion = 27636.884580 eV Total energy + Delta-G solvation = -3833.117890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.26656 -41.05161 -39.04625 -36.96118 -34.49441 -33.90680 -33.21071 -32.17087 -31.84104 -29.05323 -28.86056 -27.44698 -26.54437 -24.97330 -24.61023 -24.27623 -22.94972 -21.81363 -21.13079 -20.00354 -19.01039 -18.67191 -18.02691 -17.45216 -16.96944 -16.83464 -16.53880 -16.11460 -15.80857 -15.62267 -15.41240 -15.07802 -14.87867 -14.48836 -14.18224 -14.09411 -13.89067 -13.82063 -13.73966 -13.56959 -13.16436 -13.06968 -12.90980 -12.78752 -12.63097 -12.51264 -12.48910 -12.28685 -12.18783 -12.11300 -11.86980 -11.75293 -11.64804 -11.53339 -11.40681 -11.25073 -11.12495 -10.91671 -10.85382 -10.73973 -9.57136 -9.07702 -8.89971 -7.90106 -5.21341 1.45984 1.48020 1.55634 1.59781 2.06915 2.48138 2.96995 3.32375 3.44819 3.56227 3.62327 3.76886 3.82805 3.88471 4.07643 4.14692 4.19220 4.30714 4.34964 4.36376 4.37876 4.48709 4.53356 4.61801 4.64651 4.67503 4.70324 4.75653 4.80293 4.84876 4.85990 4.89501 4.90596 4.92357 5.03887 5.06883 5.08025 5.14801 5.21663 5.23033 5.27150 5.28119 5.30280 5.35260 5.49031 5.50295 5.56890 5.62810 5.76379 5.94195 6.08105 6.08204 6.48205 6.91996 7.19106 7.62179 8.64417 9.27965 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.023282 B = 0.002682 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.361754 B =10435.887375 C =10613.361863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.044 3.956 3 H 0.073 0.927 4 C -0.115 4.115 5 C -0.126 4.126 6 C 0.073 3.927 7 H 0.088 0.912 8 C -0.191 4.191 9 N -0.501 5.501 10 C 0.020 3.980 11 C 0.489 3.511 12 O -0.557 6.557 13 N -0.602 5.602 14 C 0.121 3.879 15 C -0.104 4.104 16 C -0.085 4.085 17 C 0.131 3.869 18 N -0.636 5.636 19 C -0.226 4.226 20 H 0.084 0.916 21 C -0.066 4.066 22 N -0.953 5.953 23 Si 0.976 3.024 24 H -0.282 1.282 25 H -0.270 1.270 26 H -0.298 1.298 27 C 0.161 3.839 28 C -0.091 4.091 29 C 0.117 3.883 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.130 0.870 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.076 0.924 46 H 0.037 0.963 47 H 0.053 0.947 48 H 0.247 0.753 49 H 0.031 0.969 50 H 0.007 0.993 51 H 0.063 0.937 52 H 0.059 0.941 53 H 0.110 0.890 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.485 -20.121 -11.598 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.064 4.064 3 H 0.090 0.910 4 C -0.153 4.153 5 C -0.164 4.164 6 C -0.034 4.034 7 H 0.106 0.894 8 C -0.248 4.248 9 N -0.223 5.223 10 C -0.111 4.111 11 C 0.278 3.722 12 O -0.439 6.439 13 N -0.334 5.334 14 C -0.002 4.002 15 C -0.143 4.143 16 C -0.086 4.086 17 C 0.006 3.994 18 N -0.362 5.362 19 C -0.354 4.354 20 H 0.102 0.898 21 C -0.259 4.259 22 N -0.602 5.602 23 Si 0.805 3.195 24 H -0.208 1.208 25 H -0.195 1.195 26 H -0.225 1.225 27 C 0.035 3.965 28 C -0.129 4.129 29 C -0.006 4.006 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.147 0.853 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.056 0.944 49 H 0.050 0.950 50 H 0.024 0.976 51 H 0.081 0.919 52 H 0.078 0.922 53 H 0.128 0.872 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.179 -20.313 -11.714 23.818 hybrid contribution 0.207 1.923 0.725 2.065 sum 4.385 -18.390 -10.988 21.867 Atomic orbital electron populations 1.21704 0.94079 1.02071 1.01156 1.23040 0.95312 0.98569 0.89454 0.90983 1.22578 0.96151 0.99680 0.96848 1.22727 0.97325 1.01039 0.95312 1.22336 0.88351 0.98344 0.94396 0.89365 1.22864 0.98275 1.03342 1.00364 1.64081 1.27665 1.23446 1.07143 1.22757 1.00678 0.90763 0.96942 1.22066 0.79809 0.84695 0.85583 1.90595 1.53550 1.80581 1.19134 1.48351 1.53068 1.19090 1.12940 1.21503 0.93824 0.84083 1.00764 1.21628 1.00070 0.98075 0.94542 1.21782 0.97244 0.95299 0.94290 1.22522 0.92148 0.93033 0.91719 1.45959 1.26757 1.59384 1.04085 1.19306 1.03941 1.27342 0.84808 0.89782 1.25593 0.97854 1.01009 1.01460 1.70043 1.15183 1.42629 1.32350 0.85129 0.77818 0.76865 0.79730 1.20845 1.19535 1.22517 1.21965 0.96515 0.92828 0.85213 1.21341 0.97480 0.92827 1.01295 1.21840 0.98947 0.98393 0.81399 0.93470 0.92207 0.91932 0.91680 0.90588 0.92283 0.90627 0.91410 0.92046 0.91357 0.85289 0.87256 0.89689 0.90528 0.92254 0.90565 0.94512 0.92850 0.94440 0.95002 0.97573 0.91880 0.92187 0.87197 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.59 71.98 0.69 -1.81 16 2 C 0.04 0.93 2.41 45.39 0.11 1.04 16 3 H 0.07 1.92 4.68 -4.91 -0.02 1.89 16 4 C -0.11 -2.20 6.49 31.98 0.21 -1.99 16 5 C -0.13 -2.41 5.94 31.77 0.19 -2.22 16 6 C 0.07 1.36 3.72 45.26 0.17 1.52 16 7 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 8 C -0.19 -3.45 7.72 71.98 0.56 -2.89 16 9 N -0.50 -9.82 5.07 -840.32 -4.26 -14.08 16 10 C 0.02 0.36 4.01 85.56 0.34 0.70 16 11 C 0.49 10.91 5.17 87.66 0.45 11.36 16 12 O -0.56 -14.94 9.04 -3.06 -0.03 -14.97 16 13 N -0.60 -13.35 2.94 -818.55 -2.41 -15.76 16 14 C 0.12 2.86 6.35 86.42 0.55 3.40 16 15 C -0.10 -2.88 5.31 30.57 0.16 -2.72 16 16 C -0.08 -2.87 0.83 -52.60 -0.04 -2.91 16 17 C 0.13 4.91 7.63 83.32 0.64 5.54 16 18 N -0.64 -31.71 3.55 -738.74 -2.62 -34.33 16 19 C -0.23 -12.44 10.73 84.03 0.90 -11.54 16 20 H 0.08 4.41 7.84 -2.91 -0.02 4.39 16 21 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 22 N -0.95 -57.55 11.57 21.65 0.25 -57.30 16 23 Si 0.98 45.25 29.56 68.60 2.03 47.28 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 27 C 0.16 7.50 6.52 83.22 0.54 8.05 16 28 C -0.09 -2.72 5.25 30.55 0.16 -2.56 16 29 C 0.12 2.45 6.23 86.41 0.54 2.99 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.30 8.06 -2.39 -0.02 1.28 16 35 H 0.06 1.38 6.78 -2.39 -0.02 1.36 16 36 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.07 1.06 5.81 -2.39 -0.01 1.05 16 38 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.07 1.55 4.24 -2.38 -0.01 1.54 16 40 H 0.13 1.87 5.67 -2.38 -0.01 1.85 16 41 H 0.11 1.83 7.36 -2.39 -0.02 1.81 16 42 H 0.08 2.10 6.98 -2.38 -0.02 2.08 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.08 2.08 8.09 -2.39 -0.02 2.06 16 46 H 0.04 1.35 8.06 -2.39 -0.02 1.33 16 47 H 0.05 1.83 7.53 -2.39 -0.02 1.82 16 48 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 49 H 0.03 1.69 7.15 -2.39 -0.02 1.68 16 50 H 0.01 0.32 8.09 -2.39 -0.02 0.30 16 51 H 0.06 2.25 7.95 -2.39 -0.02 2.23 16 52 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 53 H 0.11 1.72 5.84 -2.39 -0.01 1.70 16 54 H 0.08 1.63 7.60 -2.39 -0.02 1.61 16 Total: -1.00 -66.65 389.91 0.45 -66.20 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.86 Total: 20.27 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 6.63 Total: 2.70 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -9.04 Total: -121.47 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.03 Total: -14.97 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -66.65 0.45 -66.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035858918.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.702 kcal (2) G-P(sol) polarization free energy of solvation -66.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds