Wall clock time and date at job start Tue Mar 31 2020 19:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47158 * 2 1 4 4 C 1.50706 * 109.46976 * 119.99681 * 2 1 3 5 5 O 1.21273 * 120.00207 * 345.18491 * 4 2 1 6 6 N 1.34778 * 119.99539 * 165.18448 * 4 2 1 7 7 C 1.46591 * 119.69370 * 356.41847 * 6 4 2 8 8 C 1.53947 * 110.58873 * 132.19673 * 7 6 4 9 9 C 1.51526 * 107.34495 * 51.05541 * 8 7 6 10 10 H 1.08996 * 108.81817 * 53.45726 * 9 8 7 11 11 C 1.55374 * 107.78132 * 295.15187 * 9 8 7 12 12 H 1.09005 * 111.50133 * 309.60547 * 11 9 8 13 13 C 1.54058 * 100.33524 * 191.04576 * 11 9 8 14 14 C 1.55288 * 101.69906 * 38.89026 * 13 11 9 15 15 N 1.45475 * 117.33692 * 178.12311 * 9 8 7 16 16 C 1.36929 * 126.40491 * 329.30613 * 15 9 8 17 17 H 1.08004 * 119.99857 * 0.02568 * 16 15 9 18 18 C 1.38809 * 120.00439 * 180.02562 * 16 15 9 19 19 N 1.31627 * 119.99781 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00444 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47232 * 59.99386 * 20 18 16 22 22 H 1.48497 * 109.47248 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46665 * 299.99741 * 20 18 16 24 24 C 1.47723 * 119.68018 * 176.43808 * 6 4 2 25 25 N 1.46908 * 109.47477 * 239.99566 * 2 1 3 26 26 C 1.48526 * 110.99675 * 305.27458 * 25 2 1 27 27 C 1.54937 * 103.22675 * 159.71938 * 26 25 2 28 28 C 1.54599 * 102.92034 * 322.58510 * 27 26 25 29 29 C 1.47895 * 110.99326 * 62.66921 * 25 2 1 30 30 H 1.08995 * 109.47542 * 303.81209 * 1 2 3 31 31 H 1.09002 * 109.47102 * 63.81718 * 1 2 3 32 32 H 1.09001 * 109.46950 * 183.80938 * 1 2 3 33 33 H 1.09005 * 109.47063 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46932 * 299.99582 * 3 2 1 35 35 H 1.08998 * 109.47417 * 59.99650 * 3 2 1 36 36 H 1.08998 * 109.25743 * 252.48585 * 7 6 4 37 37 H 1.09004 * 109.25003 * 11.91294 * 7 6 4 38 38 H 1.09000 * 109.88454 * 291.59854 * 8 7 6 39 39 H 1.09000 * 109.88731 * 170.51647 * 8 7 6 40 40 H 1.08997 * 110.92258 * 280.84381 * 13 11 9 41 41 H 1.09010 * 111.12601 * 157.02500 * 13 11 9 42 42 H 1.09004 * 109.92360 * 218.27991 * 14 13 11 43 43 H 1.09002 * 109.91970 * 97.17907 * 14 13 11 44 44 H 0.96994 * 119.99834 * 179.97438 * 19 18 16 45 45 H 1.09000 * 110.06745 * 112.82975 * 24 6 4 46 46 H 1.08995 * 110.16644 * 351.29868 * 24 6 4 47 47 H 1.09003 * 110.66988 * 278.15093 * 26 25 2 48 48 H 1.08995 * 110.67257 * 41.28414 * 26 25 2 49 49 H 1.08997 * 110.72897 * 204.22590 * 27 26 25 50 50 H 1.09004 * 110.72529 * 80.93873 * 27 26 25 51 51 H 1.08994 * 110.30851 * 263.04210 * 28 27 26 52 52 H 1.09000 * 110.31141 * 140.86974 * 28 27 26 53 53 H 1.08995 * 109.92581 * 333.50982 * 29 25 2 54 54 H 1.09004 * 109.91631 * 94.80826 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 1.2771 -0.9328 2.1531 6 7 3.3208 -1.0984 1.3058 7 6 4.2081 -0.8970 0.1564 8 6 5.5350 -0.2565 0.6026 9 6 6.0707 -1.0828 1.7542 10 1 6.1200 -2.1268 1.4448 11 6 5.0747 -0.9474 2.9390 12 1 4.8412 0.0968 3.1473 13 6 5.9027 -1.5859 4.0704 14 6 7.3279 -1.0562 3.7552 15 7 7.3516 -0.6887 2.3201 16 6 8.3861 -0.0907 1.6513 17 1 8.2917 0.1318 0.5987 18 6 9.5561 0.2295 2.3261 19 7 9.6709 -0.0412 3.6091 20 14 10.9670 1.0459 1.4139 21 1 10.5097 2.3428 0.8534 22 1 12.0927 1.2824 2.3530 23 1 11.4200 0.1619 0.3100 24 6 3.8254 -1.7231 2.5457 25 7 2.0197 -0.6926 -1.1994 26 6 1.4422 -2.0574 -1.2990 27 6 1.6183 -2.4083 -2.7978 28 6 1.3460 -1.0597 -3.5029 29 6 1.5987 0.0142 -2.4284 30 1 -0.3634 0.5718 0.8538 31 1 -0.3633 0.4535 -0.9222 32 1 -0.3633 -1.0254 0.0683 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 4.4132 -1.8594 -0.3124 37 1 3.7183 -0.2434 -0.5655 38 1 5.3601 0.7679 0.9313 39 1 6.2470 -0.2654 -0.2227 40 1 5.8691 -2.6737 4.0110 41 1 5.5654 -1.2398 5.0475 42 1 8.0653 -1.8346 3.9514 43 1 7.5420 -0.1796 4.3666 44 1 10.4886 0.1822 4.0805 45 1 4.0761 -2.7680 2.3628 46 1 3.0766 -1.6511 3.3344 47 1 1.9964 -2.7563 -0.6726 48 1 0.3867 -2.0493 -1.0273 49 1 0.8906 -3.1588 -3.1064 50 1 2.6341 -2.7496 -2.9973 51 1 0.3128 -1.0147 -3.8471 52 1 2.0307 -0.9255 -4.3403 53 1 0.6824 0.5736 -2.2399 54 1 2.3884 0.6898 -2.7573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036793241.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:40 Heat of formation + Delta-G solvation = 2.626775 kcal Electronic energy + Delta-G solvation = -32067.043009 eV Core-core repulsion = 28232.369369 eV Total energy + Delta-G solvation = -3834.673640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.13345 -40.38952 -39.18276 -36.77526 -35.38144 -34.39565 -32.96947 -31.32106 -30.31115 -29.81685 -29.73785 -28.10460 -26.72004 -25.69282 -23.83059 -23.62151 -22.14594 -21.84558 -21.37082 -20.84526 -19.54576 -18.65138 -18.07415 -17.22783 -16.94700 -16.67482 -16.45273 -16.07173 -15.89466 -15.67352 -15.13741 -15.06185 -14.75969 -14.60778 -14.44898 -14.08580 -13.95264 -13.71258 -13.35660 -13.25800 -13.08840 -13.07148 -12.98099 -12.94375 -12.65569 -12.63808 -12.50637 -12.39492 -12.18167 -12.08653 -12.05305 -11.95743 -11.88316 -11.74789 -11.57859 -11.48126 -11.23047 -10.97183 -10.69696 -10.66591 -9.61461 -9.21863 -8.85284 -7.80989 -5.15549 1.47083 1.50369 1.55674 1.56488 2.03189 2.52698 2.86284 3.35370 3.37565 3.52558 3.73904 3.81529 3.89434 3.93249 3.97876 4.01741 4.04335 4.17333 4.31205 4.34184 4.36259 4.42354 4.56797 4.61324 4.62196 4.63392 4.69352 4.72952 4.76618 4.78683 4.83817 4.85753 4.95161 4.96850 5.04550 5.06116 5.10357 5.10729 5.14589 5.22912 5.24776 5.29973 5.34106 5.40874 5.50628 5.56896 5.64341 5.69213 5.77626 5.84935 5.92160 6.22836 6.48838 7.11429 7.16683 7.81919 8.51183 9.30876 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.003500 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.688155 B = 7997.423826 C = 8914.822382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.086 3.914 3 C -0.142 4.142 4 C 0.523 3.477 5 O -0.587 6.587 6 N -0.593 5.593 7 C 0.117 3.883 8 C -0.124 4.124 9 C 0.160 3.840 10 H 0.015 0.985 11 C -0.106 4.106 12 H 0.061 0.939 13 C -0.122 4.122 14 C 0.183 3.817 15 N -0.615 5.615 16 C -0.229 4.229 17 H 0.087 0.913 18 C -0.070 4.070 19 N -0.956 5.956 20 Si 0.975 3.025 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.276 1.276 24 C 0.131 3.869 25 N -0.503 5.503 26 C 0.021 3.979 27 C -0.117 4.117 28 C -0.124 4.124 29 C 0.024 3.976 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.147 0.853 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.003 0.997 43 H 0.017 0.983 44 H 0.244 0.756 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.081 0.919 50 H 0.071 0.929 51 H 0.077 0.923 52 H 0.080 0.920 53 H 0.065 0.935 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.743 -1.450 -14.688 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.006 4.006 3 C -0.200 4.200 4 C 0.311 3.689 5 O -0.467 6.467 6 N -0.323 5.323 7 C -0.006 4.006 8 C -0.163 4.163 9 C 0.053 3.947 10 H 0.033 0.967 11 C -0.126 4.126 12 H 0.080 0.920 13 C -0.160 4.160 14 C 0.058 3.942 15 N -0.340 5.340 16 C -0.358 4.358 17 H 0.105 0.895 18 C -0.263 4.263 19 N -0.605 5.605 20 Si 0.804 3.196 21 H -0.202 1.202 22 H -0.225 1.225 23 H -0.202 1.202 24 C 0.008 3.992 25 N -0.228 5.228 26 C -0.106 4.106 27 C -0.155 4.155 28 C -0.162 4.162 29 C -0.103 4.103 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.164 0.836 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.021 0.979 43 H 0.035 0.965 44 H 0.053 0.947 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.099 0.901 50 H 0.090 0.910 51 H 0.095 0.905 52 H 0.099 0.901 53 H 0.083 0.917 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.324 -1.512 -14.140 24.805 hybrid contribution 0.672 0.333 0.469 0.884 sum -19.652 -1.179 -13.671 23.968 Atomic orbital electron populations 1.22207 0.93511 1.02732 1.03399 1.21296 0.95104 0.95550 0.88689 1.21983 1.02247 0.91894 1.03860 1.20895 0.81537 0.77687 0.88746 1.90642 1.56571 1.57926 1.41541 1.48293 1.09897 1.58702 1.15406 1.22389 0.88574 1.02472 0.87134 1.21900 0.97137 0.99002 0.98298 1.20846 0.84792 0.95659 0.93416 0.96742 1.22478 0.94494 0.99019 0.96656 0.92034 1.22633 0.94987 1.00268 0.98142 1.21274 0.92181 0.96031 0.84690 1.44501 1.12581 1.70408 1.06490 1.19376 0.92390 1.30547 0.93519 0.89530 1.25633 1.00811 1.02979 0.96858 1.70170 1.27034 1.54243 1.09072 0.85191 0.78599 0.78644 0.77179 1.20208 1.22492 1.20224 1.21448 0.94631 0.96200 0.86870 1.65299 1.53417 1.02904 1.01221 1.23401 0.98517 0.90184 0.98498 1.22436 1.02586 0.97865 0.92617 1.22379 1.02562 0.93428 0.97873 1.23112 1.00919 0.97401 0.88831 0.92096 0.89171 0.92466 0.91556 0.88598 0.92183 0.91870 0.83612 0.93021 0.91191 0.90542 0.90441 0.97908 0.96471 0.94651 0.90526 0.89867 0.91844 0.92571 0.90052 0.91012 0.90463 0.90134 0.91723 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 7.06 71.98 0.51 -2.39 16 2 C 0.09 1.75 0.27 2.78 0.00 1.75 16 3 C -0.14 -2.60 8.03 71.98 0.58 -2.02 16 4 C 0.52 14.84 5.85 87.66 0.51 15.36 16 5 O -0.59 -20.53 15.44 -3.01 -0.05 -20.57 16 6 N -0.59 -16.98 3.00 -818.06 -2.45 -19.43 16 7 C 0.12 3.08 4.88 86.68 0.42 3.50 16 8 C -0.12 -4.20 5.48 30.43 0.17 -4.04 16 9 C 0.16 6.48 2.58 45.52 0.12 6.60 16 10 H 0.02 0.63 7.92 -2.39 -0.02 0.61 16 11 C -0.11 -3.87 2.86 -9.87 -0.03 -3.90 16 12 H 0.06 2.45 8.11 -2.38 -0.02 2.43 16 13 C -0.12 -4.65 6.57 31.74 0.21 -4.44 16 14 C 0.18 9.32 5.44 86.85 0.47 9.80 16 15 N -0.62 -31.74 3.35 -669.87 -2.24 -33.98 16 16 C -0.23 -12.74 9.88 84.03 0.83 -11.91 16 17 H 0.09 4.52 7.21 -2.91 -0.02 4.50 16 18 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 19 N -0.96 -58.54 10.43 21.65 0.23 -58.31 16 20 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 C 0.13 4.07 5.95 85.89 0.51 4.58 16 25 N -0.50 -8.41 1.86 -837.88 -1.56 -9.97 16 26 C 0.02 0.36 5.71 86.65 0.49 0.85 16 27 C -0.12 -1.42 7.06 31.80 0.22 -1.20 16 28 C -0.12 -1.19 6.93 31.48 0.22 -0.98 16 29 C 0.02 0.28 5.13 86.45 0.44 0.72 16 30 H 0.06 1.25 8.06 -2.39 -0.02 1.24 16 31 H 0.09 1.15 6.01 -2.39 -0.01 1.13 16 32 H 0.06 1.14 6.18 -2.39 -0.01 1.13 16 33 H 0.07 1.37 6.44 -2.38 -0.02 1.35 16 34 H 0.10 1.22 6.90 -2.38 -0.02 1.21 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.15 3.30 3.41 -2.38 -0.01 3.30 16 38 H 0.05 1.86 8.11 -2.39 -0.02 1.84 16 39 H 0.07 2.40 7.62 -2.39 -0.02 2.39 16 40 H 0.08 2.65 8.12 -2.39 -0.02 2.63 16 41 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 42 H 0.00 0.15 7.77 -2.38 -0.02 0.13 16 43 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 44 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 45 H 0.08 2.24 8.08 -2.39 -0.02 2.22 16 46 H 0.08 2.68 7.03 -2.39 -0.02 2.66 16 47 H 0.06 1.31 8.06 -2.39 -0.02 1.29 16 48 H 0.06 0.95 5.54 -2.39 -0.01 0.94 16 49 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 51 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 52 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 53 H 0.06 0.64 5.28 -2.39 -0.01 0.63 16 54 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -69.82 386.62 2.97 -66.85 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.87 Total: 18.76 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 6.15 Total: 8.70 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -6.03 Total: -121.70 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.05 Total: -20.57 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -69.82 2.97 -66.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036793241.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.475 kcal (2) G-P(sol) polarization free energy of solvation -69.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds