Wall clock time and date at job start Tue Mar 31 2020 19:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46994 * 2 1 4 4 H 1.08993 * 109.49585 * 305.00319 * 3 2 1 5 5 C 1.53197 * 109.49305 * 65.06447 * 3 2 1 6 6 N 1.46940 * 108.76847 * 174.55467 * 5 3 2 7 7 C 1.34774 * 120.60042 * 126.42499 * 6 5 3 8 8 O 1.21278 * 120.00357 * 355.81061 * 7 6 5 9 9 C 1.50708 * 119.99744 * 175.81811 * 7 6 5 10 10 C 1.54133 * 110.74430 * 61.99351 * 9 7 6 11 11 C 1.57067 * 102.00544 * 97.58236 * 10 9 7 12 12 C 1.54846 * 101.72717 * 36.30569 * 11 10 9 13 13 N 1.47847 * 110.77677 * 181.66893 * 9 7 6 14 14 C 1.47948 * 108.37663 * 120.32588 * 13 9 7 15 15 C 1.54832 * 105.06523 * 337.18590 * 14 13 9 16 16 C 1.54138 * 110.73932 * 300.55541 * 9 7 6 17 17 C 1.46928 * 118.76466 * 306.44201 * 6 5 3 18 18 C 1.53194 * 108.77069 * 53.58929 * 17 6 5 19 19 C 1.53035 * 109.31531 * 305.36142 * 18 17 6 20 20 H 1.08998 * 109.46183 * 301.34983 * 19 18 17 21 21 N 1.46502 * 109.45958 * 181.38843 * 19 18 17 22 22 C 1.36939 * 120.00119 * 84.93552 * 21 19 18 23 23 H 1.07998 * 119.99949 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00071 * 180.02562 * 22 21 19 25 25 N 1.31615 * 120.00032 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99843 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47066 * 59.99773 * 26 24 22 28 28 H 1.48497 * 109.46726 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46811 * 299.99384 * 26 24 22 30 30 H 1.09007 * 109.46572 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47212 * 59.99995 * 1 2 3 32 32 H 1.09002 * 109.47558 * 299.99631 * 1 2 3 33 33 H 1.08998 * 109.47212 * 120.00005 * 2 1 3 34 34 H 1.09002 * 109.47558 * 240.00368 * 2 1 3 35 35 H 1.08999 * 109.58492 * 294.37032 * 5 3 2 36 36 H 1.08997 * 109.58772 * 54.80036 * 5 3 2 37 37 H 1.08999 * 110.72965 * 215.76675 * 10 9 7 38 38 H 1.09000 * 110.73696 * 339.07266 * 10 9 7 39 39 H 1.09001 * 111.10467 * 278.12766 * 11 10 9 40 40 H 1.09003 * 110.81097 * 154.35611 * 11 10 9 41 41 H 1.09001 * 110.32128 * 204.26417 * 12 11 10 42 42 H 1.08997 * 110.31715 * 82.06014 * 12 11 10 43 43 H 1.08997 * 110.32871 * 218.28605 * 14 13 9 44 44 H 1.09002 * 110.41076 * 96.12397 * 14 13 9 45 45 H 1.09003 * 110.99207 * 278.57422 * 15 14 13 46 46 H 1.09005 * 111.02962 * 154.77660 * 15 14 13 47 47 H 1.09000 * 110.73708 * 20.92256 * 16 9 7 48 48 H 1.09009 * 110.72897 * 144.22049 * 16 9 7 49 49 H 1.08994 * 109.58490 * 293.80256 * 17 6 5 50 50 H 1.09000 * 109.70065 * 173.44551 * 17 6 5 51 51 H 1.09006 * 109.49314 * 185.41358 * 18 17 6 52 52 H 1.08995 * 109.49693 * 65.32064 * 18 17 6 53 53 H 0.97003 * 119.99807 * 264.93497 * 21 19 18 54 54 H 0.97000 * 120.00045 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9820 -0.8416 5 6 1.6363 2.1275 1.3095 6 7 2.2435 3.4649 1.3503 7 6 1.4838 4.5570 1.5661 8 8 0.2788 4.4500 1.6531 9 6 2.1315 5.9113 1.6991 10 6 2.8684 6.2939 0.4005 11 6 1.8125 7.2092 -0.3166 12 6 1.1756 7.9541 0.8823 13 7 1.1181 6.9530 1.9702 14 6 1.4416 7.5929 3.2644 15 6 2.2971 6.5509 4.0258 16 6 3.1287 5.9262 2.8744 17 6 3.6939 3.5894 1.1509 18 6 4.0736 2.8882 -0.1571 19 6 3.5653 1.4451 -0.1240 20 1 4.0000 0.9265 0.7304 21 7 3.9556 0.7617 -1.3597 22 6 5.1938 0.1860 -1.4620 23 1 5.8829 0.2360 -0.6318 24 6 5.5638 -0.4611 -2.6330 25 7 4.7244 -0.5217 -3.6448 26 14 7.2528 -1.2471 -2.7721 27 1 7.4019 -2.2886 -1.7242 28 1 7.4001 -1.8694 -4.1123 29 1 8.2985 -0.2086 -2.5904 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 0.5510 2.2168 1.3557 36 1 1.9929 1.5389 2.1548 37 1 3.7796 6.8491 0.6232 38 1 3.0909 5.4070 -0.1927 39 1 1.0692 6.6117 -0.8445 40 1 2.3026 7.9080 -0.9947 41 1 0.1719 8.2938 0.6269 42 1 1.7985 8.7985 1.1773 43 1 0.5283 7.8102 3.8181 44 1 2.0130 8.5073 3.1041 45 1 1.6660 5.8011 4.5028 46 1 2.9446 7.0354 4.7567 47 1 3.4404 4.9133 3.1291 48 1 3.9920 6.5492 2.6400 49 1 4.2186 3.1198 1.9829 50 1 3.9679 4.6428 1.0938 51 1 5.1579 2.8895 -0.2690 52 1 3.6202 3.4146 -0.9970 53 1 3.3369 0.7171 -2.1054 54 1 4.9828 -0.9742 -4.4630 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037886629.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:17 Heat of formation + Delta-G solvation = -31.378329 kcal Electronic energy + Delta-G solvation = -31739.194588 eV Core-core repulsion = 27903.046376 eV Total energy + Delta-G solvation = -3836.148211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.24646 -40.21786 -38.64451 -36.25213 -35.40114 -34.84832 -33.43965 -32.58168 -31.06056 -29.97146 -29.08759 -26.72129 -26.47712 -25.19462 -24.70077 -22.86590 -22.37893 -22.05826 -21.72830 -20.95813 -19.70531 -19.01317 -17.68502 -17.45516 -17.05506 -16.76179 -16.27142 -16.02610 -15.58853 -15.52932 -15.13587 -15.09185 -14.69716 -14.60123 -14.50644 -14.38878 -14.05756 -13.96071 -13.66692 -13.36655 -13.26343 -13.09521 -12.96035 -12.79754 -12.70169 -12.56625 -12.49443 -12.26543 -12.18783 -12.13002 -12.03833 -11.84921 -11.80550 -11.78640 -11.56442 -11.49834 -11.36705 -11.08210 -10.85153 -10.59580 -9.60583 -9.32419 -8.93982 -7.88734 -5.16351 1.49871 1.51957 1.57754 1.66605 1.93957 2.59734 2.99377 3.34406 3.44664 3.45232 3.67332 3.71939 3.79498 3.86633 3.96429 3.99351 4.05219 4.11321 4.19185 4.25211 4.33798 4.38201 4.42555 4.46492 4.56202 4.60675 4.62327 4.69563 4.74843 4.78006 4.80770 4.83792 4.85885 4.89757 4.94176 4.99243 5.01583 5.02283 5.07303 5.09568 5.15441 5.17723 5.23066 5.29137 5.38839 5.47544 5.53601 5.59537 5.66983 5.86408 6.08582 6.32049 6.50369 7.28123 7.38820 8.14884 8.38497 9.34673 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.003317 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.094753 B = 8439.703366 C = 9186.360176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.091 4.091 4 H 0.046 0.954 5 C 0.127 3.873 6 N -0.608 5.608 7 C 0.527 3.473 8 O -0.569 6.569 9 C 0.076 3.924 10 C -0.139 4.139 11 C -0.132 4.132 12 C 0.040 3.960 13 N -0.521 5.521 14 C 0.037 3.963 15 C -0.128 4.128 16 C -0.133 4.133 17 C 0.105 3.895 18 C -0.141 4.141 19 C 0.180 3.820 20 H 0.048 0.952 21 N -0.731 5.731 22 C -0.230 4.230 23 H 0.079 0.921 24 C -0.075 4.075 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.280 1.280 28 H -0.302 1.302 29 H -0.277 1.277 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.055 0.945 46 H 0.104 0.896 47 H 0.082 0.918 48 H 0.109 0.891 49 H 0.085 0.915 50 H 0.111 0.889 51 H 0.070 0.930 52 H 0.044 0.956 53 H 0.369 0.631 54 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 17.812 15.600 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.111 4.111 4 H 0.065 0.935 5 C 0.004 3.996 6 N -0.341 5.341 7 C 0.315 3.685 8 O -0.447 6.447 9 C -0.018 4.018 10 C -0.177 4.177 11 C -0.170 4.170 12 C -0.087 4.087 13 N -0.245 5.245 14 C -0.091 4.091 15 C -0.166 4.166 16 C -0.172 4.172 17 C -0.018 4.018 18 C -0.182 4.182 19 C 0.072 3.928 20 H 0.066 0.934 21 N -0.369 5.369 22 C -0.362 4.362 23 H 0.096 0.904 24 C -0.267 4.267 25 N -0.623 5.623 26 Si 0.797 3.203 27 H -0.206 1.206 28 H -0.229 1.229 29 H -0.203 1.203 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.123 0.877 47 H 0.101 0.899 48 H 0.127 0.873 49 H 0.103 0.897 50 H 0.129 0.871 51 H 0.089 0.911 52 H 0.062 0.938 53 H 0.201 0.799 54 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.711 17.476 15.738 23.809 hybrid contribution 1.039 -0.675 -1.209 1.731 sum -2.672 16.801 14.529 22.372 Atomic orbital electron populations 1.21771 0.95104 1.01855 1.01517 1.21356 0.95884 0.95290 1.01966 1.21610 0.96047 0.96303 0.97162 0.93501 1.21579 0.99033 0.82129 0.96834 1.48162 1.08919 1.06173 1.70854 1.20835 0.86555 0.86089 0.75004 1.90617 1.16115 1.86442 1.51488 1.22142 0.91132 0.90238 0.98260 1.23549 0.98993 1.00883 0.94289 1.23091 0.97521 0.98621 0.97798 1.23266 1.01242 0.93829 0.90343 1.64734 1.45964 1.10246 1.03578 1.23316 0.99556 0.96774 0.89405 1.22764 0.98116 0.98101 0.97640 1.23144 0.97466 1.03463 0.93085 1.22191 0.78985 1.03040 0.97540 1.22479 1.01386 0.97610 0.96741 1.20392 0.92075 0.91391 0.88961 0.93364 1.42582 1.15467 1.65031 1.13862 1.19565 0.92533 1.25787 0.98328 0.90351 1.25468 1.01509 1.03216 0.96547 1.69817 1.37143 1.50129 1.05168 0.85303 0.80485 0.78465 0.76067 1.20592 1.22878 1.20286 0.91995 0.93839 0.91975 0.91604 0.93410 0.90212 0.90165 0.86959 0.90641 0.93326 0.88244 0.90675 0.90569 0.90573 0.90827 0.92605 0.87745 0.89948 0.87308 0.89663 0.87092 0.91142 0.93766 0.79897 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 9.67 71.98 0.70 -3.48 16 2 C -0.11 -3.57 5.31 30.60 0.16 -3.41 16 3 C -0.09 -3.06 1.92 -10.71 -0.02 -3.08 16 4 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 5 C 0.13 3.73 5.33 86.36 0.46 4.19 16 6 N -0.61 -16.68 2.89 -818.86 -2.37 -19.05 16 7 C 0.53 15.73 6.50 87.66 0.57 16.30 16 8 O -0.57 -21.89 15.92 -3.02 -0.05 -21.94 16 9 C 0.08 1.65 0.62 3.37 0.00 1.65 16 10 C -0.14 -2.60 4.66 32.41 0.15 -2.45 16 11 C -0.13 -2.54 7.12 32.65 0.23 -2.30 16 12 C 0.04 0.73 6.75 86.73 0.59 1.32 16 13 N -0.52 -11.75 4.93 -831.22 -4.10 -15.84 16 14 C 0.04 0.60 6.74 86.73 0.58 1.18 16 15 C -0.13 -1.90 7.07 31.96 0.23 -1.67 16 16 C -0.13 -2.04 4.83 31.72 0.15 -1.89 16 17 C 0.10 2.43 3.89 86.36 0.34 2.77 16 18 C -0.14 -4.44 5.51 30.67 0.17 -4.27 16 19 C 0.18 6.66 2.19 45.02 0.10 6.76 16 20 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 21 N -0.73 -35.15 4.33 -322.83 -1.40 -36.55 16 22 C -0.23 -12.16 9.93 84.03 0.83 -11.33 16 23 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 24 C -0.08 -4.21 5.50 84.86 0.47 -3.75 16 25 N -0.97 -58.80 13.06 21.65 0.28 -58.52 16 26 Si 0.97 45.08 29.55 68.60 2.03 47.10 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 28 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 29 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 30 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.63 6.70 -2.39 -0.02 1.62 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.94 7.22 -2.39 -0.02 1.93 16 35 H 0.08 2.55 5.72 -2.39 -0.01 2.54 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.11 1.42 7.32 -2.39 -0.02 1.41 16 38 H 0.08 1.69 5.35 -2.39 -0.01 1.68 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.08 0.98 7.13 -2.39 -0.02 0.96 16 43 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 0.86 7.14 -2.39 -0.02 0.84 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.08 1.31 6.25 -2.39 -0.01 1.30 16 48 H 0.11 1.10 7.32 -2.38 -0.02 1.08 16 49 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 50 H 0.11 2.06 3.56 -2.39 -0.01 2.05 16 51 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 52 H 0.04 1.52 7.62 -2.39 -0.02 1.50 16 53 H 0.37 19.78 7.51 -92.71 -0.70 19.09 16 54 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -70.19 394.40 0.30 -69.90 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: 0.19 Total: 38.36 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.71 Total: -3.46 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -7.58 Total: -129.96 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -70.19 0.30 -69.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037886629.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.521 kcal (2) G-P(sol) polarization free energy of solvation -70.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds