Wall clock time and date at job start Tue Mar 31 2020 19:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47088 * 2 1 4 4 N 1.46906 * 109.47057 * 119.99716 * 2 1 3 5 5 C 1.47440 * 110.99652 * 59.15691 * 4 2 1 6 6 C 1.54321 * 107.23366 * 123.26017 * 5 4 2 7 7 C 1.55135 * 103.01825 * 22.27980 * 6 5 4 8 8 C 1.47837 * 111.00011 * 179.97438 * 4 2 1 9 9 H 1.09007 * 110.37597 * 332.58162 * 8 4 2 10 10 C 1.50699 * 110.37237 * 94.80541 * 8 4 2 11 11 O 1.21277 * 120.00196 * 25.19101 * 10 8 4 12 12 N 1.34782 * 120.00329 * 205.18135 * 10 8 4 13 13 C 1.46944 * 120.44415 * 174.26692 * 12 10 8 14 14 C 1.53594 * 108.52562 * 125.75634 * 13 12 10 15 15 H 1.08993 * 110.59682 * 172.77954 * 14 13 12 16 16 C 1.53367 * 108.69062 * 294.37216 * 14 13 12 17 17 C 1.53001 * 109.28429 * 60.30732 * 16 14 13 18 18 C 1.53005 * 109.79869 * 60.55854 * 17 16 14 19 19 C 1.53372 * 109.25384 * 299.42703 * 18 17 16 20 20 H 1.09002 * 110.59891 * 177.53415 * 19 18 17 21 21 C 1.46951 * 120.43593 * 353.99626 * 12 10 8 22 22 N 1.47569 * 107.98057 * 56.38531 * 19 18 17 23 23 C 1.36942 * 121.61045 * 122.23081 * 22 19 18 24 24 H 1.07999 * 119.99965 * 215.49231 * 23 22 19 25 25 C 1.38808 * 120.00021 * 35.48955 * 23 22 19 26 26 N 1.31617 * 120.00336 * 355.86869 * 25 23 22 27 27 Si 1.86803 * 119.99853 * 175.86585 * 25 23 22 28 28 H 1.48500 * 109.47230 * 90.00009 * 27 25 23 29 29 H 1.48506 * 109.46713 * 210.00067 * 27 25 23 30 30 H 1.48493 * 109.47059 * 329.99610 * 27 25 23 31 31 H 1.09001 * 109.47457 * 300.00407 * 1 2 3 32 32 H 1.08998 * 109.47215 * 60.00134 * 1 2 3 33 33 H 1.08999 * 109.47807 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46971 * 239.99412 * 2 1 3 35 35 H 1.08999 * 109.47695 * 59.99855 * 3 2 1 36 36 H 1.09005 * 109.47166 * 180.02562 * 3 2 1 37 37 H 1.09008 * 109.47067 * 300.00016 * 3 2 1 38 38 H 1.09012 * 109.88914 * 242.66104 * 5 4 2 39 39 H 1.09001 * 109.89590 * 3.85142 * 5 4 2 40 40 H 1.09001 * 110.70785 * 140.66155 * 6 5 4 41 41 H 1.09002 * 110.69929 * 263.89808 * 6 5 4 42 42 H 1.09006 * 110.99320 * 206.26294 * 7 6 5 43 43 H 1.09000 * 110.99547 * 82.43798 * 7 6 5 44 44 H 1.08999 * 109.62524 * 245.46585 * 13 12 10 45 45 H 1.09002 * 109.62350 * 5.85116 * 13 12 10 46 46 H 1.08997 * 109.50588 * 180.25513 * 16 14 13 47 47 H 1.09004 * 109.50219 * 300.33085 * 16 14 13 48 48 H 1.08996 * 109.42215 * 180.66375 * 17 16 14 49 49 H 1.09006 * 109.41714 * 300.46665 * 17 16 14 50 50 H 1.09005 * 109.51067 * 59.35917 * 18 17 16 51 51 H 1.09005 * 109.51180 * 179.49096 * 18 17 16 52 52 H 1.08995 * 109.62810 * 353.94054 * 21 12 10 53 53 H 1.08999 * 109.62200 * 114.50779 * 21 12 10 54 54 H 0.97000 * 120.00492 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.5304 -2.0826 1.2437 6 6 2.7679 -3.0002 1.3338 7 6 3.8597 -2.0592 1.9075 8 6 3.4975 -0.7127 1.2334 9 1 3.9009 -0.6723 0.2215 10 6 4.0194 0.4403 2.0515 11 8 3.3262 0.9331 2.9161 12 7 5.2565 0.9237 1.8226 13 6 5.7285 2.1247 2.5255 14 6 7.0561 1.7921 3.2225 15 1 7.5014 2.6912 3.6483 16 6 6.7892 0.7518 4.3174 17 6 6.2094 -0.5134 3.6817 18 6 7.2080 -1.0935 2.6780 19 6 7.4758 -0.0605 1.5765 20 1 8.2186 -0.4349 0.8720 21 6 6.1535 0.2531 0.8711 22 7 7.9498 1.1798 2.2205 23 6 9.1607 1.7355 1.9039 24 1 9.7477 2.2226 2.6684 25 6 9.6335 1.6728 0.6003 26 7 8.9576 1.0094 -0.3137 27 14 11.2290 2.5300 0.1432 28 1 12.3664 1.5952 0.3372 29 1 11.1734 2.9537 -1.2790 30 1 11.4155 3.7227 1.0080 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3635 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.6767 1.9564 0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9563 -0.8901 38 1 0.8983 -2.2256 2.1203 39 1 0.9677 -2.3068 0.3375 40 1 2.5817 -3.8330 2.0119 41 1 3.0517 -3.3624 0.3456 42 1 4.8552 -2.3892 1.6104 43 1 3.7818 -1.9864 2.9923 44 1 5.8832 2.9312 1.8088 45 1 4.9891 2.4297 3.2660 46 1 7.7232 0.5092 4.8243 47 1 6.0784 1.1561 5.0381 48 1 6.0079 -1.2500 4.4594 49 1 5.2803 -0.2674 3.1674 50 1 8.1412 -1.3311 3.1888 51 1 6.7942 -1.9993 2.2348 52 1 5.6951 -0.6740 0.5269 53 1 6.3420 0.9090 0.0212 54 1 9.2882 0.9653 -1.2246 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039585399.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:03 Heat of formation + Delta-G solvation = 9.621948 kcal Electronic energy + Delta-G solvation = -33190.558998 eV Core-core repulsion = 29356.188692 eV Total energy + Delta-G solvation = -3834.370306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.32675 -40.30005 -38.60074 -35.57490 -35.32416 -34.62106 -33.54901 -32.00610 -30.87148 -30.17399 -28.45620 -27.75614 -27.09722 -25.49607 -24.00863 -23.02659 -22.74186 -22.08949 -21.25323 -20.38889 -19.90029 -18.56255 -17.93875 -17.30843 -16.92463 -16.42435 -16.29291 -15.92846 -15.68376 -15.54673 -15.17160 -14.72377 -14.66620 -14.52236 -14.27288 -14.13471 -14.04277 -13.80156 -13.59281 -13.44832 -13.24368 -13.05397 -12.93737 -12.80117 -12.69391 -12.60853 -12.37407 -12.25793 -12.18865 -12.08152 -11.97284 -11.85585 -11.74242 -11.68532 -11.66096 -11.51923 -11.10093 -11.06618 -10.68811 -10.42243 -9.34527 -9.21452 -8.30047 -7.81052 -5.35942 1.48540 1.51836 1.58486 1.69785 2.05142 2.52476 2.98793 3.32771 3.50654 3.54264 3.67024 3.85171 3.96187 4.04982 4.12268 4.14169 4.19749 4.20246 4.27622 4.31572 4.38662 4.43856 4.53569 4.55836 4.64934 4.72000 4.74069 4.78595 4.82864 4.83811 4.86912 4.91289 4.92903 4.96477 5.00600 5.03517 5.07719 5.10012 5.17530 5.24596 5.26911 5.33022 5.34779 5.37164 5.52532 5.56685 5.68642 5.69763 5.91445 5.99201 6.18565 6.49958 6.65132 7.22746 7.35046 7.84239 8.46854 9.20588 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.004113 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.119251 B = 6805.902045 C = 7125.687729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.072 3.928 3 C -0.142 4.142 4 N -0.523 5.523 5 C 0.042 3.958 6 C -0.131 4.131 7 C -0.118 4.118 8 C 0.058 3.942 9 H 0.075 0.925 10 C 0.530 3.470 11 O -0.566 6.566 12 N -0.596 5.596 13 C 0.110 3.890 14 C 0.150 3.850 15 H 0.072 0.928 16 C -0.115 4.115 17 C -0.137 4.137 18 C -0.124 4.124 19 C 0.171 3.829 20 H 0.099 0.901 21 C 0.121 3.879 22 N -0.594 5.594 23 C -0.261 4.261 24 H 0.056 0.944 25 C -0.028 4.028 26 N -0.918 5.918 27 Si 0.959 3.041 28 H -0.288 1.288 29 H -0.294 1.294 30 H -0.278 1.278 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.029 0.971 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.044 0.956 45 H 0.079 0.921 46 H 0.046 0.954 47 H 0.056 0.944 48 H 0.043 0.957 49 H 0.091 0.909 50 H 0.038 0.962 51 H 0.067 0.933 52 H 0.084 0.916 53 H 0.049 0.951 54 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.950 -8.214 -0.568 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.036 4.036 3 C -0.199 4.199 4 N -0.249 5.249 5 C -0.084 4.084 6 C -0.169 4.169 7 C -0.156 4.156 8 C -0.053 4.053 9 H 0.093 0.907 10 C 0.320 3.680 11 O -0.445 6.445 12 N -0.329 5.329 13 C -0.015 4.015 14 C 0.043 3.957 15 H 0.090 0.910 16 C -0.155 4.155 17 C -0.175 4.175 18 C -0.163 4.163 19 C 0.064 3.936 20 H 0.116 0.884 21 C -0.003 4.003 22 N -0.316 5.316 23 C -0.391 4.391 24 H 0.074 0.926 25 C -0.225 4.225 26 N -0.563 5.563 27 Si 0.788 3.212 28 H -0.215 1.215 29 H -0.220 1.220 30 H -0.204 1.204 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.097 0.903 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.109 0.891 50 H 0.056 0.944 51 H 0.086 0.914 52 H 0.102 0.898 53 H 0.067 0.933 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.455 -7.657 0.118 16.359 hybrid contribution 1.725 0.602 -0.934 2.052 sum -12.731 -7.056 -0.816 14.578 Atomic orbital electron populations 1.21828 0.92354 1.02835 1.02316 1.21870 0.97163 0.94181 0.90388 1.21845 0.99491 0.96652 1.01951 1.63170 1.05402 1.16752 1.39538 1.22929 0.97536 0.85303 1.02663 1.22801 0.93573 0.98046 1.02464 1.22751 1.00652 0.91762 1.00453 1.22471 0.90201 0.94312 0.98356 0.90700 1.20459 0.79932 0.84149 0.83459 1.90612 1.57861 1.61438 1.34598 1.48259 1.13808 1.28078 1.42777 1.21958 0.96925 0.86554 0.96017 1.21307 0.89311 0.95143 0.89973 0.91001 1.21823 0.99402 0.96933 0.97295 1.22118 1.00957 0.96190 0.98256 1.22060 0.98030 0.98351 0.97858 1.21138 0.93632 0.85742 0.93081 0.88358 1.22025 0.90977 0.96231 0.91027 1.44426 1.16735 1.24617 1.45853 1.19298 0.95628 1.32141 0.92046 0.92591 1.25774 1.01309 0.99790 0.95584 1.69889 1.40299 1.43822 1.02280 0.85417 0.80227 0.78812 0.76730 1.21498 1.22002 1.20370 0.93020 0.90801 0.91084 0.93248 0.93588 0.95212 0.90560 0.90361 0.90399 0.88581 0.89788 0.89314 0.91389 0.93727 0.90311 0.93496 0.92520 0.93836 0.89104 0.94352 0.91421 0.89786 0.93282 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.05 71.98 0.65 -1.82 16 2 C 0.07 1.67 2.27 44.91 0.10 1.77 16 3 C -0.14 -3.87 8.49 71.98 0.61 -3.26 16 4 N -0.52 -13.59 4.36 -839.99 -3.67 -17.25 16 5 C 0.04 0.81 6.14 86.65 0.53 1.34 16 6 C -0.13 -2.24 6.94 31.77 0.22 -2.01 16 7 C -0.12 -2.81 5.63 31.97 0.18 -2.63 16 8 C 0.06 1.66 1.25 44.63 0.06 1.71 16 9 H 0.08 2.11 6.15 -2.38 -0.01 2.10 16 10 C 0.53 18.91 2.54 87.66 0.22 19.13 16 11 O -0.57 -23.62 16.01 -3.02 -0.05 -23.67 16 12 N -0.60 -22.44 1.66 -818.16 -1.36 -23.80 16 13 C 0.11 4.43 5.90 86.49 0.51 4.94 16 14 C 0.15 6.23 3.61 45.11 0.16 6.39 16 15 H 0.07 2.98 8.03 -2.39 -0.02 2.96 16 16 C -0.12 -4.33 5.58 30.72 0.17 -4.16 16 17 C -0.14 -4.88 5.40 30.60 0.17 -4.72 16 18 C -0.12 -4.56 5.58 30.72 0.17 -4.39 16 19 C 0.17 7.34 2.62 44.95 0.12 7.46 16 20 H 0.10 4.88 5.79 -2.39 -0.01 4.87 16 21 C 0.12 4.70 5.51 86.33 0.48 5.18 16 22 N -0.59 -27.93 2.54 -646.54 -1.64 -29.57 16 23 C -0.26 -13.60 9.71 84.03 0.82 -12.79 16 24 H 0.06 2.94 7.83 -2.91 -0.02 2.92 16 25 C -0.03 -1.45 5.36 84.86 0.46 -0.99 16 26 N -0.92 -48.33 10.14 21.65 0.22 -48.11 16 27 Si 0.96 42.84 29.56 68.60 2.03 44.87 16 28 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 29 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 30 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.06 6.45 -2.39 -0.02 1.05 16 34 H 0.05 1.05 8.09 -2.39 -0.02 1.03 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.03 0.93 6.17 -2.38 -0.01 0.92 16 37 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.08 1.18 6.29 -2.39 -0.02 1.16 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 2.03 6.36 -2.38 -0.02 2.01 16 43 H 0.07 1.83 7.86 -2.39 -0.02 1.82 16 44 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.08 3.12 6.98 -2.39 -0.02 3.10 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 48 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.09 3.26 1.66 -3.37 -0.01 3.26 16 50 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 51 H 0.07 2.12 6.91 -2.38 -0.02 2.10 16 52 H 0.08 2.78 5.08 -2.39 -0.01 2.77 16 53 H 0.05 2.22 7.74 -2.39 -0.02 2.20 16 54 H 0.25 12.97 8.31 -92.71 -0.77 12.20 16 Total: -1.00 -60.30 380.58 2.03 -58.27 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.88 Total: 28.13 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 5.62 Total: 11.14 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -6.45 Total: -118.74 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.05 Total: -23.67 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -60.30 2.03 -58.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039585399.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.889 kcal (2) G-P(sol) polarization free energy of solvation -60.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds