Wall clock time and date at job start Tue Mar 31 2020 19:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 N 1.46904 * 109.46946 * 119.99610 * 2 1 3 5 5 C 1.48673 * 111.11193 * 288.76513 * 4 2 1 6 6 C 1.54374 * 104.67146 * 201.10188 * 5 4 2 7 7 C 1.54255 * 105.06477 * 23.77147 * 6 5 4 8 8 C 1.48561 * 110.99812 * 173.34872 * 4 2 1 9 9 H 1.09001 * 110.41444 * 40.14273 * 8 4 2 10 10 C 1.50703 * 110.41017 * 277.82215 * 8 4 2 11 11 O 1.21280 * 119.99966 * 338.00848 * 10 8 4 12 12 N 1.34775 * 119.99874 * 158.01477 * 10 8 4 13 13 C 1.50786 * 120.61097 * 354.66493 * 12 10 8 14 14 C 1.53591 * 108.03039 * 125.99551 * 13 12 10 15 15 H 1.09004 * 110.59929 * 171.99436 * 14 13 12 16 16 C 1.53371 * 108.68518 * 293.58548 * 14 13 12 17 17 C 1.53011 * 109.24946 * 60.86721 * 16 14 13 18 18 C 1.53011 * 109.79353 * 60.58404 * 17 16 14 19 19 C 1.53364 * 109.27534 * 299.42898 * 18 17 16 20 20 H 1.09003 * 110.59395 * 177.49362 * 19 18 17 21 21 C 1.46951 * 120.43943 * 174.03340 * 12 10 8 22 22 N 1.47567 * 107.98141 * 56.34852 * 19 18 17 23 23 C 1.36941 * 121.61233 * 121.68274 * 22 19 18 24 24 H 1.07996 * 119.99663 * 324.89684 * 23 22 19 25 25 C 1.38809 * 120.00543 * 144.89770 * 23 22 19 26 26 N 1.31618 * 120.00205 * 154.49258 * 25 23 22 27 27 Si 1.86805 * 119.99594 * 334.49563 * 25 23 22 28 28 H 1.48503 * 109.47221 * 84.84513 * 27 25 23 29 29 H 1.48504 * 109.46927 * 204.84043 * 27 25 23 30 30 H 1.48491 * 109.47177 * 324.84024 * 27 25 23 31 31 H 1.08995 * 109.47336 * 299.99715 * 1 2 3 32 32 H 1.08995 * 109.47218 * 59.99990 * 1 2 3 33 33 H 1.09002 * 109.46624 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47553 * 239.99816 * 2 1 3 35 35 H 1.08999 * 109.47277 * 289.71507 * 3 2 1 36 36 H 1.09008 * 109.47279 * 49.71178 * 3 2 1 37 37 H 1.08999 * 109.46955 * 169.71189 * 3 2 1 38 38 H 1.08995 * 110.44304 * 82.25983 * 5 4 2 39 39 H 1.09001 * 110.40290 * 319.92175 * 5 4 2 40 40 H 1.09004 * 110.32309 * 264.87582 * 6 5 4 41 41 H 1.09002 * 110.41243 * 142.71414 * 6 5 4 42 42 H 1.09001 * 110.32431 * 241.10771 * 7 6 5 43 43 H 1.08997 * 110.41343 * 118.93874 * 7 6 5 44 44 H 1.08993 * 109.98657 * 6.37088 * 13 12 10 45 45 H 1.09008 * 109.76828 * 245.48573 * 13 12 10 46 46 H 1.09005 * 109.50705 * 180.79890 * 16 14 13 47 47 H 1.08995 * 109.50855 * 300.93297 * 16 14 13 48 48 H 1.09001 * 109.41540 * 180.68056 * 17 16 14 49 49 H 1.08999 * 109.41900 * 300.48251 * 17 16 14 50 50 H 1.08999 * 109.50468 * 59.37326 * 18 17 16 51 51 H 1.09001 * 109.50210 * 179.44824 * 18 17 16 52 52 H 1.08997 * 109.62761 * 114.54631 * 21 12 10 53 53 H 1.08996 * 109.63130 * 353.96432 * 21 12 10 54 54 H 0.96996 * 119.99904 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.7775 0.1181 2.4221 6 6 2.7792 -0.4313 3.4603 7 6 3.9097 -1.0702 2.6276 8 6 3.4959 -0.8529 1.1562 9 1 3.9647 0.0471 0.7584 10 6 3.8701 -2.0513 0.3226 11 8 3.0626 -2.9371 0.1373 12 7 5.1020 -2.1388 -0.2170 13 6 6.0759 -0.9940 -0.0967 14 6 7.3768 -1.5384 0.5118 15 1 8.1586 -0.7792 0.4879 16 6 7.0976 -1.9801 1.9537 17 6 6.0417 -3.0875 1.9466 18 6 6.5557 -4.2885 1.1499 19 6 6.8334 -3.8560 -0.2951 20 1 7.2430 -4.6856 -0.8715 21 6 5.5217 -3.3587 -0.9206 22 7 7.7854 -2.7291 -0.2584 23 6 8.9948 -2.7900 -0.8977 24 1 9.5325 -3.7253 -0.9479 25 6 9.5298 -1.6498 -1.4813 26 7 10.8316 -1.5416 -1.6419 27 14 8.4019 -0.2689 -2.0385 28 1 8.1090 0.6252 -0.8896 29 1 9.0667 0.5095 -3.1144 30 1 7.1336 -0.8435 -2.5546 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8342 1.9006 -0.9674 36 1 1.5345 2.0066 0.7839 37 1 3.1144 1.4480 0.1835 38 1 0.7543 -0.0175 2.7723 39 1 1.9743 1.1719 2.2246 40 1 2.3001 -1.1830 4.0877 41 1 3.1727 0.3786 4.0745 42 1 3.9854 -2.1353 2.8462 43 1 4.8586 -0.5741 2.8311 44 1 5.6639 -0.2209 0.5518 45 1 6.2794 -0.5778 -1.0835 46 1 8.0165 -2.3562 2.4036 47 1 6.7305 -1.1309 2.5300 48 1 5.8323 -3.3951 2.9711 49 1 5.1268 -2.7129 1.4876 50 1 7.4758 -4.6584 1.6023 51 1 5.8041 -5.0779 1.1561 52 1 5.6806 -3.1365 -1.9758 53 1 4.7530 -4.1244 -0.8164 54 1 11.2054 -0.7447 -2.0493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039585400.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:07 Heat of formation + Delta-G solvation = 22.527589 kcal Electronic energy + Delta-G solvation = -33322.884912 eV Core-core repulsion = 29489.074236 eV Total energy + Delta-G solvation = -3833.810675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.43609 -40.44329 -38.85547 -35.66013 -35.30427 -34.60053 -33.80293 -32.84500 -30.76520 -30.03743 -28.44559 -28.15293 -27.33008 -25.62936 -24.18915 -23.46011 -23.06318 -22.13916 -21.24253 -20.19831 -19.86672 -18.60343 -18.33331 -17.45542 -17.15924 -16.76090 -16.42646 -15.85030 -15.73035 -15.56018 -15.33592 -15.11079 -14.78370 -14.66544 -14.60925 -14.50628 -14.29357 -14.07267 -13.77480 -13.68454 -13.44727 -13.15078 -13.06495 -12.76777 -12.68619 -12.50171 -12.41047 -12.32548 -12.24956 -12.14841 -12.05935 -11.91956 -11.77467 -11.67272 -11.59673 -11.46179 -11.33908 -11.10378 -10.69223 -10.56926 -9.55733 -9.33220 -8.62563 -8.20946 -5.53833 1.24510 1.39969 1.47459 1.56768 1.78411 2.39594 2.90961 2.99124 3.21638 3.36269 3.61188 3.78299 3.81256 3.89892 3.98121 4.04966 4.07411 4.12631 4.13031 4.17506 4.29329 4.31999 4.34273 4.45237 4.51036 4.56406 4.63585 4.66090 4.68283 4.73881 4.74888 4.77300 4.80327 4.87057 4.91566 4.98883 5.03589 5.09341 5.11627 5.17029 5.18941 5.22791 5.28943 5.31090 5.33310 5.36716 5.43637 5.59271 5.83082 5.90499 6.07905 6.15275 6.37653 6.90233 7.17265 7.57274 8.08937 8.98893 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.004764 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.879797 B = 5876.535007 C = 6424.606300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.061 3.939 3 C -0.184 4.184 4 N -0.499 5.499 5 C 0.025 3.975 6 C -0.116 4.116 7 C -0.117 4.117 8 C 0.039 3.961 9 H 0.084 0.916 10 C 0.527 3.473 11 O -0.562 6.562 12 N -0.601 5.601 13 C 0.080 3.920 14 C 0.138 3.862 15 H 0.074 0.926 16 C -0.115 4.115 17 C -0.139 4.139 18 C -0.118 4.118 19 C 0.151 3.849 20 H 0.076 0.924 21 C 0.106 3.894 22 N -0.600 5.600 23 C -0.251 4.251 24 H 0.042 0.958 25 C -0.014 4.014 26 N -0.945 5.945 27 Si 0.927 3.073 28 H -0.251 1.251 29 H -0.316 1.316 30 H -0.265 1.265 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.085 0.915 48 H 0.058 0.942 49 H 0.093 0.907 50 H 0.049 0.951 51 H 0.063 0.937 52 H 0.049 0.951 53 H 0.089 0.911 54 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.225 7.826 10.261 23.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.048 4.048 3 C -0.242 4.242 4 N -0.224 5.224 5 C -0.101 4.101 6 C -0.154 4.154 7 C -0.155 4.155 8 C -0.072 4.072 9 H 0.102 0.898 10 C 0.317 3.683 11 O -0.440 6.440 12 N -0.336 5.336 13 C -0.042 4.042 14 C 0.031 3.969 15 H 0.092 0.908 16 C -0.154 4.154 17 C -0.176 4.176 18 C -0.157 4.157 19 C 0.045 3.955 20 H 0.094 0.906 21 C -0.019 4.019 22 N -0.323 5.323 23 C -0.381 4.381 24 H 0.060 0.940 25 C -0.211 4.211 26 N -0.589 5.589 27 Si 0.756 3.244 28 H -0.176 1.176 29 H -0.245 1.245 30 H -0.191 1.191 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.112 0.888 44 H 0.131 0.869 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.103 0.897 48 H 0.077 0.923 49 H 0.111 0.889 50 H 0.068 0.932 51 H 0.081 0.919 52 H 0.067 0.933 53 H 0.107 0.893 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.801 6.909 10.088 23.272 hybrid contribution 0.942 0.917 -1.283 1.836 sum -18.860 7.826 8.806 22.237 Atomic orbital electron populations 1.21680 0.92582 1.01855 1.02638 1.21825 0.97415 0.93015 0.92523 1.22474 1.01202 0.96873 1.03654 1.65340 1.08871 1.44913 1.03263 1.23348 1.00989 0.96599 0.89211 1.22311 0.94800 1.01039 0.97284 1.22505 1.00269 1.02569 0.90193 1.22766 0.91756 0.95288 0.97409 0.89814 1.20558 0.80184 0.88605 0.78953 1.90648 1.49707 1.42375 1.61294 1.49094 1.13243 1.16653 1.54614 1.23488 0.90615 0.88405 1.01737 1.21512 0.93585 0.89867 0.91900 0.90775 1.21910 0.98888 0.99093 0.95510 1.22255 1.00397 0.95544 0.99447 1.21840 1.00008 0.98036 0.95835 1.21381 0.88125 0.90532 0.95499 0.90617 1.22048 0.97504 0.87268 0.95052 1.44629 1.16157 1.14637 1.56903 1.18631 0.93846 0.96508 1.29076 0.93986 1.25968 0.96203 1.00493 0.98415 1.70021 1.12030 1.29897 1.46932 0.86358 0.79163 0.80163 0.78746 1.17578 1.24548 1.19126 0.91205 0.91251 0.93415 0.93271 0.91322 0.90026 0.92880 0.89074 0.91252 0.90745 0.88622 0.91310 0.88797 0.86874 0.92445 0.93225 0.89679 0.92325 0.88907 0.93241 0.91850 0.93265 0.89317 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.25 71.98 0.67 -1.64 16 2 C 0.06 1.31 2.90 44.91 0.13 1.44 16 3 C -0.18 -2.99 8.13 71.98 0.59 -2.41 16 4 N -0.50 -11.48 4.66 -835.71 -3.90 -15.38 16 5 C 0.03 0.40 5.54 86.43 0.48 0.88 16 6 C -0.12 -1.72 7.00 31.49 0.22 -1.50 16 7 C -0.12 -2.33 5.25 31.49 0.17 -2.16 16 8 C 0.04 0.96 1.65 44.32 0.07 1.03 16 9 H 0.08 1.87 4.12 -2.39 -0.01 1.86 16 10 C 0.53 16.99 4.50 87.66 0.39 17.39 16 11 O -0.56 -21.90 16.05 -3.03 -0.05 -21.95 16 12 N -0.60 -20.31 1.73 -807.03 -1.39 -21.70 16 13 C 0.08 2.67 5.17 85.74 0.44 3.11 16 14 C 0.14 5.21 2.38 45.11 0.11 5.32 16 15 H 0.07 3.10 5.43 -2.38 -0.01 3.08 16 16 C -0.12 -3.58 5.51 30.72 0.17 -3.41 16 17 C -0.14 -4.17 3.96 30.60 0.12 -4.04 16 18 C -0.12 -3.99 5.58 30.72 0.17 -3.82 16 19 C 0.15 5.85 3.58 45.11 0.16 6.01 16 20 H 0.08 3.03 8.01 -2.39 -0.02 3.01 16 21 C 0.11 3.88 5.91 86.49 0.51 4.39 16 22 N -0.60 -26.62 2.15 -645.67 -1.39 -28.01 16 23 C -0.25 -13.68 10.02 84.03 0.84 -12.84 16 24 H 0.04 2.57 8.06 -2.91 -0.02 2.54 16 25 C -0.01 -0.78 5.12 84.86 0.43 -0.35 16 26 N -0.94 -57.15 13.97 21.65 0.30 -56.84 16 27 Si 0.93 42.95 23.16 68.60 1.59 44.54 16 28 H -0.25 -10.19 6.33 99.48 0.63 -9.56 16 29 H -0.32 -15.34 7.11 99.48 0.71 -14.63 16 30 H -0.27 -12.07 6.17 99.48 0.61 -11.45 16 31 H 0.07 1.00 7.33 -2.39 -0.02 0.98 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 1.35 7.84 -2.39 -0.02 1.33 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.03 6.54 -2.38 -0.02 1.01 16 37 H 0.05 0.91 6.02 -2.39 -0.01 0.90 16 38 H 0.09 1.30 7.80 -2.39 -0.02 1.28 16 39 H 0.07 0.89 5.46 -2.39 -0.01 0.88 16 40 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 1.61 6.07 -2.39 -0.01 1.60 16 43 H 0.09 1.58 6.53 -2.39 -0.02 1.56 16 44 H 0.11 2.89 5.62 -2.39 -0.01 2.88 16 45 H 0.06 2.13 3.82 -2.38 -0.01 2.12 16 46 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 47 H 0.08 2.04 6.56 -2.39 -0.02 2.02 16 48 H 0.06 1.57 8.00 -2.39 -0.02 1.55 16 49 H 0.09 2.80 1.14 -3.15 0.00 2.79 16 50 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 52 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 53 H 0.09 3.18 7.02 -2.39 -0.02 3.16 16 54 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -67.86 365.72 1.58 -66.28 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.73 Total: 25.66 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 5.68 Total: 7.40 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -6.37 Total: -121.93 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.59 Total: 44.54 kcal Total: -67.86 1.58 -66.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039585400.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.808 kcal (2) G-P(sol) polarization free energy of solvation -67.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds