Wall clock time and date at job start Tue Mar 31 2020 19:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47116 * 2 1 4 4 N 1.46905 * 109.46872 * 179.97438 * 3 2 1 5 5 C 1.47842 * 110.99920 * 58.93923 * 4 3 2 6 6 C 1.54912 * 104.79708 * 146.36021 * 5 4 3 7 7 C 1.55398 * 101.74312 * 323.01976 * 6 5 4 8 8 C 1.47443 * 110.99734 * 179.77964 * 4 3 2 9 9 H 1.08997 * 109.88667 * 117.17617 * 8 4 3 10 10 C 1.50703 * 109.89064 * 356.15031 * 8 4 3 11 11 O 1.21276 * 120.00084 * 309.58890 * 10 8 4 12 12 N 1.34773 * 119.99945 * 129.58895 * 10 8 4 13 13 C 1.46939 * 120.44390 * 185.75540 * 12 10 8 14 14 C 1.53590 * 108.55630 * 125.76787 * 13 12 10 15 15 H 1.08997 * 110.60286 * 172.73190 * 14 13 12 16 16 C 1.53374 * 108.68726 * 294.32881 * 14 13 12 17 17 C 1.53005 * 109.25740 * 60.86849 * 16 14 13 18 18 C 1.53008 * 109.79761 * 60.57425 * 17 16 14 19 19 C 1.53362 * 109.27760 * 299.44001 * 18 17 16 20 20 H 1.09000 * 110.59973 * 177.49474 * 19 18 17 21 21 C 1.50788 * 120.60923 * 5.12117 * 12 10 8 22 22 N 1.47569 * 108.28018 * 51.38700 * 14 13 12 23 23 C 1.36931 * 121.60691 * 120.83109 * 22 14 13 24 24 H 1.08005 * 120.00086 * 147.76287 * 23 22 14 25 25 C 1.38813 * 120.00116 * 327.76626 * 23 22 14 26 26 N 1.31617 * 120.00148 * 340.80290 * 25 23 22 27 27 Si 1.86803 * 120.00089 * 160.80140 * 25 23 22 28 28 H 1.48506 * 109.47028 * 60.00285 * 27 25 23 29 29 H 1.48496 * 109.47222 * 179.97438 * 27 25 23 30 30 H 1.48504 * 109.47174 * 300.00313 * 27 25 23 31 31 H 1.09003 * 109.47132 * 299.99942 * 1 2 3 32 32 H 1.09002 * 109.47188 * 59.99961 * 1 2 3 33 33 H 1.08995 * 109.47590 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47132 * 240.00058 * 2 1 3 35 35 H 1.09000 * 109.46680 * 119.99937 * 2 1 3 36 36 H 1.09003 * 109.47072 * 60.00021 * 3 2 1 37 37 H 1.09000 * 109.47295 * 299.99561 * 3 2 1 38 38 H 1.08997 * 110.37576 * 265.19049 * 5 4 3 39 39 H 1.09007 * 110.37542 * 27.42164 * 5 4 3 40 40 H 1.08997 * 110.98783 * 81.01972 * 6 5 4 41 41 H 1.08995 * 110.99247 * 204.80054 * 6 5 4 42 42 H 1.08996 * 110.67956 * 277.17586 * 7 6 5 43 43 H 1.08992 * 110.84696 * 153.85756 * 7 6 5 44 44 H 1.09007 * 109.62201 * 6.04812 * 13 12 10 45 45 H 1.08997 * 109.78479 * 245.58546 * 13 12 10 46 46 H 1.08999 * 109.50997 * 300.93113 * 16 14 13 47 47 H 1.09002 * 109.54304 * 180.82630 * 16 14 13 48 48 H 1.09008 * 109.41748 * 300.47826 * 17 16 14 49 49 H 1.08999 * 109.42020 * 180.67937 * 17 16 14 50 50 H 1.09007 * 109.50259 * 179.49990 * 18 17 16 51 51 H 1.08990 * 109.53878 * 59.40120 * 18 17 16 52 52 H 1.09003 * 109.77354 * 114.53074 * 21 12 10 53 53 H 1.08998 * 109.98950 * 353.62888 * 21 12 10 54 54 H 0.97002 * 120.00404 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0393 0.7301 -1.1814 6 6 5.3454 1.4807 -1.5427 7 6 4.9588 2.9541 -1.2353 8 6 4.0374 2.8189 -0.0047 9 1 4.6069 3.0009 0.9067 10 6 2.9012 3.8039 -0.1042 11 8 2.0574 3.6713 -0.9652 12 7 2.8227 4.8321 0.7635 13 6 1.6553 5.7244 0.7570 14 6 1.0665 5.7693 2.1749 15 1 0.2779 6.5189 2.2391 16 6 0.5197 4.3795 2.5241 17 6 1.6625 3.3629 2.4844 18 6 2.7334 3.7469 3.5076 19 6 3.2888 5.1343 3.1629 20 1 4.0231 5.4486 3.9045 21 6 3.9230 5.0771 1.7651 22 7 2.1569 6.0802 3.1193 23 6 2.1146 7.1863 3.9253 24 1 2.5692 7.1586 4.9047 25 6 1.4874 8.3433 3.4838 26 7 1.2711 8.5251 2.1983 27 14 0.9501 9.6422 4.7141 28 1 2.1351 10.1385 5.4591 29 1 0.3103 10.7720 3.9935 30 1 -0.0214 9.0490 5.6679 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 4.2551 -0.3091 -0.9330 39 1 3.3288 0.7826 -2.0065 40 1 6.1705 1.1555 -0.9091 41 1 5.5909 1.3519 -2.5968 42 1 4.4192 3.3935 -2.0742 43 1 5.8422 3.5443 -0.9923 44 1 0.9072 5.3433 0.0618 45 1 1.9588 6.7267 0.4548 46 1 -0.2445 4.0965 1.8001 47 1 0.0847 4.3994 3.5233 48 1 2.1022 3.3507 1.4870 49 1 1.2745 2.3721 2.7205 50 1 3.5407 3.0150 3.4816 51 1 2.2938 3.7685 4.5047 52 1 4.4154 6.0249 1.5475 53 1 4.6500 4.2660 1.7259 54 1 0.8325 9.3334 1.8898 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039621208.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:15 Heat of formation + Delta-G solvation = 22.348097 kcal Electronic energy + Delta-G solvation = -33253.531722 eV Core-core repulsion = 29419.713263 eV Total energy + Delta-G solvation = -3833.818459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.54886 -40.24436 -38.35166 -35.69146 -35.37311 -34.38760 -33.56098 -32.29188 -31.62132 -30.50221 -28.40505 -27.09378 -26.43217 -25.45859 -23.79957 -23.16809 -22.83035 -22.45661 -21.45234 -20.17221 -19.86138 -18.83827 -17.90381 -17.15809 -16.72479 -16.53216 -16.48620 -16.16187 -15.77320 -15.65618 -15.26882 -15.05148 -14.66999 -14.47694 -14.41024 -14.24591 -14.12590 -13.86402 -13.58127 -13.33814 -13.30851 -13.03434 -12.86578 -12.79242 -12.63753 -12.54336 -12.41901 -12.29320 -12.10676 -12.03739 -11.96636 -11.87384 -11.73619 -11.68351 -11.48634 -11.34491 -11.11777 -10.95684 -10.76626 -10.56578 -9.43523 -9.10441 -8.41236 -7.86078 -5.31286 1.47319 1.50492 1.51840 1.55880 1.99409 2.52298 2.99975 3.28871 3.34592 3.49880 3.66607 3.76830 4.05933 4.10627 4.12421 4.18617 4.19104 4.23516 4.24666 4.29117 4.44221 4.48378 4.56643 4.56697 4.63420 4.70605 4.76751 4.78640 4.85383 4.88003 4.88891 4.95281 4.97200 4.99302 5.04410 5.05668 5.09458 5.12971 5.17820 5.21817 5.30537 5.31249 5.35509 5.38695 5.45269 5.47566 5.64754 5.66227 5.77412 5.93579 6.04216 6.40430 6.52268 7.13708 7.17055 7.82688 8.44597 9.18981 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.018483 B = 0.004104 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.508169 B = 6821.250386 C = 7352.286090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.002 4.002 4 N -0.499 5.499 5 C 0.035 3.965 6 C -0.115 4.115 7 C -0.129 4.129 8 C 0.048 3.952 9 H 0.122 0.878 10 C 0.497 3.503 11 O -0.581 6.581 12 N -0.593 5.593 13 C 0.124 3.876 14 C 0.186 3.814 15 H 0.061 0.939 16 C -0.125 4.125 17 C -0.140 4.140 18 C -0.114 4.114 19 C 0.144 3.856 20 H 0.088 0.912 21 C 0.099 3.901 22 N -0.589 5.589 23 C -0.261 4.261 24 H 0.064 0.936 25 C -0.034 4.034 26 N -0.919 5.919 27 Si 0.956 3.044 28 H -0.275 1.275 29 H -0.299 1.299 30 H -0.285 1.285 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.035 0.965 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.101 0.899 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.042 0.958 47 H 0.043 0.957 48 H 0.101 0.899 49 H 0.046 0.954 50 H 0.082 0.918 51 H 0.047 0.953 52 H 0.060 0.940 53 H 0.117 0.883 54 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.334 -16.759 -4.509 19.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.130 4.130 4 N -0.223 5.223 5 C -0.092 4.092 6 C -0.153 4.153 7 C -0.167 4.167 8 C -0.063 4.063 9 H 0.139 0.861 10 C 0.288 3.712 11 O -0.463 6.463 12 N -0.325 5.325 13 C 0.000 4.000 14 C 0.078 3.922 15 H 0.079 0.921 16 C -0.165 4.165 17 C -0.178 4.178 18 C -0.153 4.153 19 C 0.038 3.962 20 H 0.106 0.894 21 C -0.024 4.024 22 N -0.311 5.311 23 C -0.391 4.391 24 H 0.082 0.918 25 C -0.232 4.232 26 N -0.563 5.563 27 Si 0.785 3.215 28 H -0.201 1.201 29 H -0.225 1.225 30 H -0.212 1.212 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.054 0.946 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.119 0.881 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.118 0.882 49 H 0.064 0.936 50 H 0.101 0.899 51 H 0.066 0.934 52 H 0.079 0.921 53 H 0.135 0.865 54 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.993 -16.882 -4.547 19.224 hybrid contribution -1.436 2.013 -0.163 2.478 sum 6.557 -14.870 -4.710 16.920 Atomic orbital electron populations 1.21702 0.95625 1.02160 1.01130 1.21473 0.95647 0.95335 1.02447 1.23438 0.87783 0.98566 1.03179 1.64241 1.08189 1.09639 1.40251 1.23228 0.95779 0.99565 0.90659 1.22744 0.97438 0.92084 1.02986 1.22812 0.99001 0.99695 0.95231 1.22901 0.93438 0.87470 1.02467 0.86090 1.21370 0.87725 0.82079 0.80026 1.90538 1.44485 1.74277 1.37006 1.49292 1.21247 1.27969 1.34033 1.21743 0.87396 0.92336 0.98536 1.20701 0.90834 0.93066 0.87573 0.92095 1.21983 0.97805 0.97139 0.99538 1.22331 0.96477 0.96254 1.02719 1.21876 0.98482 0.96841 0.98068 1.21463 0.90127 0.90145 0.94506 0.89436 1.23230 0.88320 1.01850 0.88971 1.44389 1.17234 1.24538 1.44946 1.19281 1.34843 0.89488 0.95502 0.91793 1.25671 1.02579 0.98417 0.96500 1.70124 1.45569 1.27215 1.13414 0.85528 0.78313 0.78736 0.78885 1.20087 1.22514 1.21156 0.93620 0.93809 0.90876 0.91523 0.91203 0.90545 0.92328 0.88212 0.94615 0.88476 0.89192 0.92961 0.88097 0.92637 0.93058 0.93955 0.93806 0.88166 0.93581 0.89938 0.93436 0.92140 0.86527 0.94292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.91 71.98 0.71 -2.61 16 2 C -0.11 -2.55 5.81 30.59 0.18 -2.37 16 3 C 0.00 -0.07 3.53 86.30 0.30 0.23 16 4 N -0.50 -12.27 5.24 -864.87 -4.53 -16.80 16 5 C 0.04 0.69 5.40 86.78 0.47 1.16 16 6 C -0.11 -1.82 7.08 32.07 0.23 -1.59 16 7 C -0.13 -2.73 6.48 31.87 0.21 -2.52 16 8 C 0.05 1.23 3.31 44.52 0.15 1.38 16 9 H 0.12 2.74 5.27 -2.39 -0.01 2.73 16 10 C 0.50 17.08 3.42 87.66 0.30 17.38 16 11 O -0.58 -23.69 12.93 -3.02 -0.04 -23.73 16 12 N -0.59 -21.85 1.73 -807.04 -1.39 -23.25 16 13 C 0.12 5.58 5.85 86.49 0.51 6.08 16 14 C 0.19 8.62 2.60 45.11 0.12 8.73 16 15 H 0.06 3.30 6.33 -2.39 -0.02 3.29 16 16 C -0.13 -5.07 5.58 30.72 0.17 -4.90 16 17 C -0.14 -4.83 4.12 30.60 0.13 -4.70 16 18 C -0.11 -3.63 5.57 30.72 0.17 -3.46 16 19 C 0.14 5.23 3.58 45.11 0.16 5.39 16 20 H 0.09 3.03 8.01 -2.39 -0.02 3.01 16 21 C 0.10 3.19 5.96 85.74 0.51 3.70 16 22 N -0.59 -27.19 2.52 -645.67 -1.63 -28.82 16 23 C -0.26 -13.47 9.66 84.03 0.81 -12.66 16 24 H 0.06 3.24 7.90 -2.91 -0.02 3.21 16 25 C -0.03 -1.83 4.90 84.86 0.42 -1.41 16 26 N -0.92 -51.54 10.97 21.65 0.24 -51.30 16 27 Si 0.96 43.61 29.60 68.60 2.03 45.64 16 28 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 29 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 30 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.37 7.02 -2.39 -0.02 1.36 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 2.46 3.63 -2.39 -0.01 2.45 16 37 H 0.06 2.07 5.19 -11.62 -0.06 2.01 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.04 0.81 7.56 -2.38 -0.02 0.79 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.05 1.36 7.75 -2.39 -0.02 1.34 16 43 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.06 2.57 7.02 -2.38 -0.02 2.55 16 45 H 0.05 2.64 7.54 -2.39 -0.02 2.62 16 46 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.10 3.41 1.03 -3.12 0.00 3.41 16 49 H 0.05 1.49 7.56 -2.39 -0.02 1.47 16 50 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 51 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 53 H 0.12 2.77 5.22 -2.39 -0.01 2.76 16 54 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -62.52 378.24 1.05 -61.47 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.84 Total: 28.98 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 5.54 Total: 7.82 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -7.31 Total: -120.17 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.04 Total: -23.73 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -62.52 1.05 -61.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039621208.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.814 kcal (2) G-P(sol) polarization free energy of solvation -62.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds