Wall clock time and date at job start Tue Mar 31 2020 19:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.45156 * 2 1 4 4 C 1.53039 * 109.46084 * 119.97593 * 2 1 3 5 5 C 1.53121 * 109.27448 * 179.19637 * 4 2 1 6 6 H 1.09001 * 109.52645 * 62.24271 * 5 4 2 7 7 C 1.50698 * 109.52209 * 182.44159 * 5 4 2 8 8 O 1.21282 * 119.99995 * 10.49386 * 7 5 4 9 9 N 1.34781 * 120.00167 * 190.49839 * 7 5 4 10 10 C 1.46945 * 120.43632 * 4.90276 * 9 7 5 11 11 C 1.53595 * 108.52405 * 125.76012 * 10 9 7 12 12 H 1.09003 * 110.60019 * 172.16878 * 11 10 9 13 13 C 1.53374 * 108.68657 * 293.75520 * 11 10 9 14 14 C 1.53012 * 109.27697 * 60.31270 * 13 11 10 15 15 C 1.53005 * 109.79957 * 60.55637 * 14 13 11 16 16 C 1.53370 * 109.25456 * 299.42541 * 15 14 13 17 17 H 1.08998 * 110.60152 * 177.54040 * 16 15 14 18 18 C 1.46944 * 120.44372 * 184.63194 * 9 7 5 19 19 N 1.47565 * 107.77099 * 51.14796 * 11 10 9 20 20 C 1.36942 * 121.61033 * 120.47318 * 19 11 10 21 21 H 1.08000 * 119.99496 * 24.32512 * 20 19 11 22 22 C 1.38811 * 120.00187 * 204.31925 * 20 19 11 23 23 N 1.31623 * 119.99753 * 24.05094 * 22 20 19 24 24 Si 1.86791 * 120.00119 * 204.05337 * 22 20 19 25 25 H 1.48502 * 109.47391 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47528 * 119.99980 * 24 22 20 27 27 H 1.48504 * 109.46954 * 239.99922 * 24 22 20 28 28 C 1.53124 * 109.15995 * 302.34042 * 5 4 2 29 29 C 1.53040 * 109.27746 * 57.65855 * 28 5 4 30 30 N 1.46845 * 109.45953 * 240.02684 * 2 1 3 31 31 C 1.46904 * 111.00250 * 54.14186 * 30 2 1 32 32 H 1.09009 * 109.46808 * 300.02633 * 1 2 3 33 33 H 1.08998 * 109.47372 * 60.02203 * 1 2 3 34 34 H 1.08999 * 109.47255 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.50452 * 59.25226 * 4 2 1 36 36 H 1.08998 * 109.53352 * 299.14664 * 4 2 1 37 37 H 1.09002 * 109.62716 * 245.46210 * 10 9 7 38 38 H 1.08999 * 109.62931 * 5.85241 * 10 9 7 39 39 H 1.09005 * 109.50365 * 180.25133 * 13 11 10 40 40 H 1.08998 * 109.50602 * 300.37116 * 13 11 10 41 41 H 1.09002 * 109.41526 * 180.65766 * 14 13 11 42 42 H 1.08994 * 109.41272 * 300.45850 * 14 13 11 43 43 H 1.08998 * 109.50772 * 59.35569 * 15 14 13 44 44 H 1.08997 * 109.51024 * 179.44415 * 15 14 13 45 45 H 1.09004 * 109.62063 * 353.94125 * 18 9 7 46 46 H 1.09000 * 109.62235 * 114.50080 * 18 9 7 47 47 H 0.96998 * 119.99689 * 179.97438 * 23 22 20 48 48 H 1.08990 * 109.50406 * 177.59599 * 28 5 4 49 49 H 1.09001 * 109.50377 * 297.71679 * 28 5 4 50 50 H 1.08996 * 109.46750 * 60.83266 * 29 28 5 51 51 H 1.09001 * 109.46576 * 180.80683 * 29 28 5 52 52 H 1.09000 * 109.46334 * 59.99977 * 31 30 2 53 53 H 1.08998 * 109.47406 * 179.97438 * 31 30 2 54 54 H 1.08998 * 109.47341 * 300.00356 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5710 -0.7360 1.2355 6 1 3.9457 0.2870 1.2671 7 6 4.0784 -1.4969 2.4333 8 8 3.3076 -2.1390 3.1149 9 7 5.3887 -1.4636 2.7473 10 6 6.3130 -0.6046 1.9943 11 6 7.0611 0.2963 2.9882 12 1 7.8530 0.8496 2.4833 13 6 6.0556 1.2596 3.6312 14 6 4.9855 0.4535 4.3703 15 6 5.6377 -0.3896 5.4680 16 6 6.6410 -1.3596 4.8318 17 1 7.1508 -1.9420 5.5992 18 6 5.9109 -2.2814 3.8508 19 7 7.6230 -0.5675 4.0443 20 6 8.9696 -0.6203 4.2875 21 1 9.6007 0.2123 4.0141 22 6 9.5234 -1.7439 4.8856 23 7 8.9120 -2.9061 4.7959 24 14 11.1363 -1.6067 5.8178 25 1 11.6171 -0.2025 5.7712 26 1 10.9274 -2.0122 7.2311 27 1 12.1471 -2.4965 5.1918 28 6 4.0548 -1.4189 -0.0468 29 6 3.4865 -0.6777 -1.2592 30 7 2.0192 -0.6917 -1.1994 31 6 1.4372 -0.1106 -2.4166 32 1 -0.3633 0.5143 0.8898 33 1 -0.3634 0.5135 -0.8902 34 1 -0.3634 -1.0276 0.0005 35 1 1.6659 -1.7447 1.2576 36 1 1.6896 -0.1988 2.1402 37 1 7.0277 -1.2232 1.4514 38 1 5.7511 0.0093 1.2904 39 1 6.5739 1.9092 4.3367 40 1 5.5850 1.8649 2.8565 41 1 4.2631 1.1357 4.8184 42 1 4.4744 -0.2021 3.6653 43 1 6.1574 0.2640 6.1685 44 1 4.8704 -0.9541 5.9977 45 1 5.0842 -2.7669 4.3696 46 1 6.5927 -3.0352 3.4570 47 1 9.2991 -3.6913 5.2135 48 1 5.1438 -1.3947 -0.0833 49 1 3.7125 -2.4536 -0.0595 50 1 3.8402 0.3532 -1.2533 51 1 3.8174 -1.1699 -2.1737 52 1 1.7118 0.9421 -2.4837 53 1 1.8166 -0.6411 -3.2899 54 1 0.3516 -0.2011 -2.3792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039876679.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:45 Heat of formation + Delta-G solvation = -1.167403 kcal Electronic energy + Delta-G solvation = -32451.095168 eV Core-core repulsion = 28616.257000 eV Total energy + Delta-G solvation = -3834.838167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.29614 -40.24111 -38.92270 -35.67739 -34.81595 -34.43628 -33.36751 -33.27585 -32.09930 -29.03864 -28.22333 -27.56600 -26.86065 -25.46131 -24.20743 -23.26243 -22.95234 -22.60880 -20.91921 -20.30665 -19.90722 -18.59954 -17.68032 -16.99749 -16.64729 -16.60444 -16.48070 -15.99508 -15.77476 -15.41646 -15.27815 -15.09483 -14.86521 -14.59972 -14.49124 -14.15973 -14.00089 -13.82718 -13.57788 -13.50345 -13.12474 -13.07548 -12.95135 -12.83314 -12.73272 -12.61158 -12.51878 -12.40989 -12.18691 -12.09597 -11.89957 -11.78053 -11.73763 -11.68172 -11.53327 -11.32901 -11.19728 -11.01323 -10.61666 -10.47143 -9.40055 -9.17963 -8.50196 -7.86427 -5.20931 1.45584 1.50935 1.58529 1.65761 2.10810 2.53419 2.99800 3.27331 3.45473 3.50012 3.72451 3.83420 4.04047 4.10538 4.14471 4.17601 4.20265 4.26166 4.34098 4.35233 4.44008 4.48401 4.53549 4.59860 4.61099 4.67514 4.73959 4.78170 4.83636 4.84860 4.88703 4.92834 4.94577 4.96805 4.99915 5.05931 5.10398 5.13750 5.16395 5.20934 5.23247 5.30250 5.31499 5.41911 5.45835 5.46567 5.65101 5.68292 5.81289 6.21397 6.23918 6.36312 6.61236 7.11935 7.24367 7.83366 8.43964 9.20398 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.023037 B = 0.003349 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.144584 B = 8358.476836 C = 8602.484469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.050 0.950 4 C -0.086 4.086 5 C -0.099 4.099 6 H 0.111 0.889 7 C 0.516 3.484 8 O -0.590 6.590 9 N -0.590 5.590 10 C 0.101 3.899 11 C 0.142 3.858 12 H 0.086 0.914 13 C -0.115 4.115 14 C -0.136 4.136 15 C -0.122 4.122 16 C 0.178 3.822 17 H 0.068 0.932 18 C 0.126 3.874 19 N -0.595 5.595 20 C -0.251 4.251 21 H 0.069 0.931 22 C -0.043 4.043 23 N -0.918 5.918 24 Si 0.952 3.048 25 H -0.270 1.270 26 H -0.298 1.298 27 H -0.296 1.296 28 C -0.104 4.104 29 C 0.064 3.936 30 N -0.556 5.556 31 C 0.023 3.977 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.112 0.888 39 H 0.048 0.952 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.247 0.753 48 H 0.081 0.919 49 H 0.055 0.945 50 H 0.049 0.951 51 H 0.089 0.911 52 H 0.031 0.969 53 H 0.073 0.927 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.748 9.748 -13.875 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 H 0.068 0.932 4 C -0.124 4.124 5 C -0.120 4.120 6 H 0.129 0.871 7 C 0.307 3.693 8 O -0.471 6.471 9 N -0.321 5.321 10 C -0.023 4.023 11 C 0.035 3.965 12 H 0.104 0.896 13 C -0.154 4.154 14 C -0.173 4.173 15 C -0.161 4.161 16 C 0.071 3.929 17 H 0.086 0.914 18 C 0.002 3.998 19 N -0.318 5.318 20 C -0.381 4.381 21 H 0.087 0.913 22 C -0.239 4.239 23 N -0.564 5.564 24 Si 0.782 3.218 25 H -0.194 1.194 26 H -0.225 1.225 27 H -0.224 1.224 28 C -0.142 4.142 29 C -0.064 4.064 30 N -0.282 5.282 31 C -0.125 4.125 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.130 0.870 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.099 0.901 49 H 0.074 0.926 50 H 0.068 0.932 51 H 0.108 0.892 52 H 0.050 0.950 53 H 0.092 0.908 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.180 8.785 -13.445 21.424 hybrid contribution 1.576 0.017 1.210 1.987 sum -12.604 8.802 -12.236 19.648 Atomic orbital electron populations 1.21888 0.93247 1.02384 1.02675 1.21594 0.96245 0.95161 0.89163 0.93174 1.21391 0.92177 1.01376 0.97461 1.21426 0.97857 1.00428 0.92318 0.87144 1.20972 0.81234 0.81054 0.86023 1.90643 1.56133 1.46046 1.54298 1.48226 1.07544 1.43151 1.33217 1.22462 0.92412 0.93196 0.94240 1.21486 0.94598 0.91271 0.89135 0.89619 1.21897 0.96487 0.97251 0.99720 1.22049 0.97932 0.98758 0.98608 1.21889 0.97669 0.98505 0.98046 1.20963 0.88146 0.91049 0.92780 0.91423 1.21628 0.96107 0.93499 0.88572 1.44812 1.01560 1.49718 1.35685 1.19375 0.84264 0.98493 1.35998 0.91338 1.25468 1.00419 0.94464 1.03550 1.70185 1.41858 0.98307 1.46050 0.85448 0.80561 0.77519 0.78286 1.19416 1.22535 1.22356 1.21582 1.00852 0.99586 0.92212 1.22048 0.86988 0.99417 0.97922 1.61921 1.07499 1.55922 1.02858 1.22449 1.00985 0.97511 0.91524 0.91585 0.90915 0.92700 0.92558 0.91596 0.92755 0.87008 0.93310 0.89652 0.93295 0.89807 0.93693 0.93704 0.92487 0.93109 0.94392 0.90067 0.92602 0.93245 0.89240 0.95016 0.90848 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.77 71.98 0.63 -1.57 16 2 C 0.09 1.55 2.44 44.94 0.11 1.66 16 3 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.09 -2.04 4.06 30.65 0.12 -1.92 16 5 C -0.10 -2.42 1.73 -11.46 -0.02 -2.44 16 6 H 0.11 2.26 6.88 -2.39 -0.02 2.24 16 7 C 0.52 17.65 4.26 87.66 0.37 18.03 16 8 O -0.59 -24.73 15.30 -3.04 -0.05 -24.78 16 9 N -0.59 -21.39 1.66 -818.12 -1.36 -22.75 16 10 C 0.10 3.17 4.65 86.49 0.40 3.58 16 11 C 0.14 5.06 3.58 45.11 0.16 5.22 16 12 H 0.09 2.91 8.01 -2.39 -0.02 2.89 16 13 C -0.11 -3.54 5.59 30.72 0.17 -3.37 16 14 C -0.14 -4.64 5.55 30.60 0.17 -4.47 16 15 C -0.12 -4.95 5.62 30.72 0.17 -4.78 16 16 C 0.18 8.25 2.69 44.73 0.12 8.37 16 17 H 0.07 3.68 6.04 -2.39 -0.01 3.67 16 18 C 0.13 5.65 5.88 86.34 0.51 6.16 16 19 N -0.60 -27.46 2.57 -643.71 -1.66 -29.12 16 20 C -0.25 -12.98 9.70 84.03 0.82 -12.16 16 21 H 0.07 3.46 7.94 -2.91 -0.02 3.44 16 22 C -0.04 -2.28 4.88 84.86 0.41 -1.86 16 23 N -0.92 -51.80 11.12 21.65 0.24 -51.56 16 24 Si 0.95 43.90 29.62 68.60 2.03 45.93 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 28 C -0.10 -2.27 5.09 30.65 0.16 -2.11 16 29 C 0.06 1.06 5.46 86.33 0.47 1.54 16 30 N -0.56 -9.83 4.75 -897.16 -4.26 -14.08 16 31 C 0.02 0.29 9.05 127.69 1.16 1.45 16 32 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.07 0.87 6.32 -2.39 -0.02 0.85 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.63 7.91 -2.39 -0.02 1.61 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.11 2.55 5.04 -2.39 -0.01 2.54 16 39 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 2.92 2.54 -2.59 -0.01 2.91 16 43 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.06 2.65 6.98 -2.38 -0.02 2.63 16 46 H 0.05 2.59 7.85 -2.39 -0.02 2.57 16 47 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 48 H 0.08 1.70 6.44 -2.39 -0.02 1.69 16 49 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.09 1.31 8.09 -2.39 -0.02 1.29 16 52 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 53 H 0.07 0.83 8.09 -2.39 -0.02 0.82 16 54 H 0.08 0.90 6.21 -2.39 -0.01 0.88 16 Total: -1.00 -64.13 383.82 1.76 -62.38 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.87 Total: 22.67 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 5.94 Total: 11.30 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -7.03 Total: -117.51 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -64.13 1.76 -62.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039876679.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.208 kcal (2) G-P(sol) polarization free energy of solvation -64.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds