Wall clock time and date at job start Tue Mar 31 2020 19:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.06660 * 2 1 4 4 C 1.54000 * 109.91524 * 238.80399 * 2 1 3 5 5 H 1.08998 * 110.39185 * 120.46140 * 4 2 1 6 6 C 1.50693 * 110.30981 * 358.33285 * 4 2 1 7 7 O 1.21287 * 120.00242 * 276.48232 * 6 4 2 8 8 N 1.34781 * 120.00007 * 96.47676 * 6 4 2 9 9 C 1.47083 * 125.62523 * 0.02894 * 8 6 4 10 10 C 1.54463 * 107.30016 * 180.97430 * 9 8 6 11 11 C 1.54356 * 102.86219 * 21.47913 * 10 9 8 12 12 C 1.47580 * 125.62718 * 179.71575 * 8 6 4 13 13 C 1.52062 * 110.60350 * 207.23406 * 11 10 9 14 14 C 1.53187 * 109.67918 * 295.82747 * 13 11 10 15 15 C 1.53190 * 109.27662 * 300.04706 * 14 13 11 16 16 N 1.46935 * 108.94154 * 55.30651 * 15 14 13 17 17 C 1.36941 * 120.71448 * 125.73007 * 16 15 14 18 18 H 1.07996 * 119.99915 * 209.17647 * 17 16 15 19 19 C 1.38812 * 120.00014 * 29.17072 * 17 16 15 20 20 N 1.31624 * 119.99598 * 19.37925 * 19 17 16 21 21 Si 1.86804 * 120.00024 * 199.36939 * 19 17 16 22 22 H 1.48504 * 109.46679 * 84.99562 * 21 19 17 23 23 H 1.48500 * 109.46898 * 204.99117 * 21 19 17 24 24 H 1.48493 * 109.47027 * 324.99772 * 21 19 17 25 25 C 1.47108 * 118.57187 * 305.75049 * 16 15 14 26 26 C 1.54600 * 105.13709 * 239.41873 * 4 2 1 27 27 C 1.54944 * 102.92095 * 338.04320 * 26 4 2 28 28 N 1.47891 * 109.92130 * 121.21125 * 2 1 3 29 29 C 1.46906 * 111.00171 * 265.19689 * 28 2 1 30 30 H 1.08994 * 109.46623 * 302.77522 * 1 2 3 31 31 H 1.09001 * 109.46911 * 62.77585 * 1 2 3 32 32 H 1.08999 * 109.46917 * 182.77689 * 1 2 3 33 33 H 1.08999 * 109.87915 * 300.40519 * 9 8 6 34 34 H 1.09003 * 109.87807 * 61.40104 * 9 8 6 35 35 H 1.09002 * 110.73509 * 139.81832 * 10 9 8 36 36 H 1.08992 * 110.73678 * 262.95057 * 10 9 8 37 37 H 1.08995 * 110.37770 * 275.55184 * 12 8 6 38 38 H 1.09000 * 110.37281 * 37.90559 * 12 8 6 39 39 H 1.09001 * 109.44215 * 55.89442 * 13 11 10 40 40 H 1.09008 * 109.43760 * 175.76276 * 13 11 10 41 41 H 1.09003 * 109.50350 * 180.10835 * 14 13 11 42 42 H 1.08996 * 109.53644 * 60.00712 * 14 13 11 43 43 H 1.09006 * 109.55711 * 295.47469 * 15 14 13 44 44 H 1.08998 * 109.56221 * 175.14839 * 15 14 13 45 45 H 0.97001 * 119.99633 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.57634 * 292.45354 * 25 16 15 47 47 H 1.08997 * 109.57803 * 172.05913 * 25 16 15 48 48 H 1.08997 * 110.72640 * 219.68265 * 26 4 2 49 49 H 1.08996 * 110.87476 * 96.46908 * 26 4 2 50 50 H 1.09000 * 110.66173 * 278.97915 * 27 26 4 51 51 H 1.09000 * 110.80739 * 155.91833 * 27 26 4 52 52 H 1.08997 * 109.46592 * 302.47866 * 29 28 2 53 53 H 1.08998 * 109.46787 * 62.47378 * 29 28 2 54 54 H 1.08997 * 109.47201 * 182.47287 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0239 0.0000 4 6 2.0546 -0.7500 -1.2385 5 1 2.6709 -0.0902 -1.8492 6 6 0.9046 -1.2891 -2.0495 7 8 0.3938 -2.3472 -1.7486 8 7 0.4436 -0.5954 -3.1092 9 6 0.9684 0.6944 -3.5829 10 6 0.1186 1.1163 -4.8018 11 6 -1.1822 0.3078 -4.6102 12 6 -0.6668 -1.0078 -3.9895 13 6 -1.8503 0.0435 -5.9503 14 6 -2.2851 1.3703 -6.5806 15 6 -3.2742 2.0740 -5.6460 16 7 -2.6544 2.2255 -4.3224 17 6 -2.5736 3.4548 -3.7245 18 1 -1.7648 3.6715 -3.0426 19 6 -3.5314 4.4225 -3.9952 20 7 -4.6964 4.0728 -4.4981 21 14 -3.1669 6.2209 -3.6452 22 1 -2.4467 6.8139 -4.8007 23 1 -4.4417 6.9513 -3.4288 24 1 -2.3227 6.3272 -2.4283 25 6 -2.1221 1.0283 -3.6536 26 6 2.9060 -1.9116 -0.6765 27 6 3.2682 -1.4185 0.7470 28 7 2.0339 -0.7205 1.1892 29 6 2.3213 0.2121 2.2873 30 1 -0.3632 0.5563 0.8640 31 1 -0.3633 0.4701 -0.9138 32 1 -0.3633 -1.0265 0.0498 33 1 0.8820 1.4418 -2.7942 34 1 2.0124 0.5845 -3.8763 35 1 -0.0853 2.1868 -4.7782 36 1 0.6146 0.8399 -5.7322 37 1 -0.3050 -1.6811 -4.7666 38 1 -1.4545 -1.4866 -3.4078 39 1 -1.1467 -0.4597 -6.6135 40 1 -2.7242 -0.5909 -5.8012 41 1 -2.7653 1.1774 -7.5400 42 1 -1.4123 2.0054 -6.7316 43 1 -4.1814 1.4761 -5.5578 44 1 -3.5204 3.0566 -6.0483 45 1 -5.3658 4.7490 -4.6869 46 1 -2.9441 0.3661 -3.3814 47 1 -1.5759 1.3229 -2.7576 48 1 3.8053 -2.0556 -1.2753 49 1 2.3242 -2.8321 -0.6294 50 1 4.1098 -0.7267 0.7118 51 1 3.4906 -2.2599 1.4033 52 1 3.0446 0.9556 1.9524 53 1 1.4009 0.7112 2.5902 54 1 2.7315 -0.3386 3.1337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040211764.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:22 Heat of formation + Delta-G solvation = -25.050462 kcal Electronic energy + Delta-G solvation = -31714.585679 eV Core-core repulsion = 27878.711864 eV Total energy + Delta-G solvation = -3835.873815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.89307 -40.53972 -38.88402 -37.25305 -34.87526 -33.46279 -32.52307 -32.31419 -32.04310 -30.49072 -28.06844 -27.30658 -26.52303 -25.88983 -24.18579 -23.82772 -22.80303 -22.07321 -21.70357 -20.01254 -19.13922 -18.47911 -18.16026 -17.34627 -16.85605 -16.74922 -16.54626 -15.90660 -15.74229 -15.45275 -15.33860 -15.29758 -15.01633 -14.58475 -14.17085 -14.05626 -13.96698 -13.73553 -13.52759 -13.51291 -13.29521 -13.21192 -13.08028 -12.98979 -12.77906 -12.68421 -12.50179 -12.31958 -12.24473 -12.13932 -12.03959 -11.93228 -11.91808 -11.71677 -11.61864 -11.34531 -11.17126 -11.02169 -10.74355 -10.50278 -9.59162 -9.41220 -8.65029 -7.85985 -5.30923 1.47665 1.48766 1.56723 1.60835 2.00981 2.51799 2.96400 3.27327 3.32499 3.52445 3.54031 3.66686 3.76151 3.92685 3.93457 4.11685 4.22443 4.27626 4.30654 4.34701 4.40497 4.42342 4.42871 4.47489 4.49500 4.64097 4.64960 4.69351 4.73453 4.77685 4.78928 4.86243 4.91059 4.95124 4.98135 5.01213 5.02576 5.08767 5.12120 5.18332 5.21713 5.26201 5.30751 5.42477 5.45254 5.46321 5.57411 5.68896 5.78614 5.89744 6.08897 6.40097 6.57447 7.16596 7.18668 7.86986 8.41420 9.20369 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.003725 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.946541 B = 7514.877202 C = 8977.031322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.086 3.914 3 H 0.075 0.925 4 C -0.112 4.112 5 H 0.119 0.881 6 C 0.542 3.458 7 O -0.580 6.580 8 N -0.614 5.614 9 C 0.103 3.897 10 C -0.106 4.106 11 C -0.075 4.075 12 C 0.122 3.878 13 C -0.088 4.088 14 C -0.127 4.127 15 C 0.175 3.825 16 N -0.599 5.599 17 C -0.256 4.256 18 H 0.066 0.934 19 C -0.047 4.047 20 N -0.934 5.934 21 Si 0.961 3.039 22 H -0.281 1.281 23 H -0.300 1.300 24 H -0.269 1.269 25 C 0.170 3.830 26 C -0.109 4.109 27 C 0.041 3.959 28 N -0.539 5.539 29 C 0.017 3.983 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.063 0.937 43 H -0.013 1.013 44 H 0.048 0.952 45 H 0.248 0.752 46 H -0.010 1.010 47 H 0.044 0.956 48 H 0.100 0.900 49 H 0.066 0.934 50 H 0.066 0.934 51 H 0.091 0.909 52 H 0.040 0.960 53 H 0.062 0.938 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.753 -8.279 3.325 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 H 0.092 0.908 4 C -0.134 4.134 5 H 0.137 0.863 6 C 0.332 3.668 7 O -0.461 6.461 8 N -0.347 5.347 9 C -0.019 4.019 10 C -0.144 4.144 11 C -0.078 4.078 12 C -0.001 4.001 13 C -0.126 4.126 14 C -0.166 4.166 15 C 0.049 3.951 16 N -0.322 5.322 17 C -0.386 4.386 18 H 0.084 0.916 19 C -0.243 4.243 20 N -0.580 5.580 21 Si 0.790 3.210 22 H -0.208 1.208 23 H -0.227 1.227 24 H -0.194 1.194 25 C 0.044 3.956 26 C -0.147 4.147 27 C -0.086 4.086 28 N -0.264 5.264 29 C -0.131 4.131 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.005 0.995 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.008 0.992 47 H 0.063 0.937 48 H 0.118 0.882 49 H 0.084 0.916 50 H 0.085 0.915 51 H 0.109 0.891 52 H 0.059 0.941 53 H 0.081 0.919 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 18.998 -9.116 3.749 21.403 hybrid contribution -0.551 1.656 0.073 1.747 sum 18.447 -7.460 3.822 20.262 Atomic orbital electron populations 1.21848 0.95393 1.01459 1.01229 1.22161 0.95206 0.96287 0.88675 0.90759 1.22315 0.95090 0.99699 0.96272 0.86311 1.20342 0.84385 0.83329 0.78764 1.90662 1.61039 1.24813 1.69540 1.48671 1.34638 1.22685 1.28712 1.22224 0.98947 0.83795 0.96905 1.22485 0.93402 1.00810 0.97723 1.21453 0.95979 0.93898 0.96445 1.22150 0.88714 0.96295 0.92902 1.21180 0.99919 0.96962 0.94549 1.21999 0.99765 0.96729 0.98077 1.20585 0.91807 0.97880 0.84801 1.44245 1.68953 1.02913 1.16087 1.19406 1.05212 0.89640 1.24325 0.91636 1.25762 0.94267 1.02536 1.01701 1.70224 1.04851 1.33026 1.49921 0.85380 0.76520 0.80821 0.78326 1.20760 1.22725 1.19411 1.20637 0.93374 0.87806 0.93788 1.22501 0.99333 0.96870 0.96020 1.23269 0.91022 0.98926 0.95421 1.64646 1.27926 1.27178 1.06626 1.22549 1.00946 0.95184 0.94470 0.92326 0.93268 0.93584 0.91818 0.88441 0.90708 0.88799 0.89795 0.93035 0.89510 0.93227 0.91348 0.91863 0.99478 0.93349 0.94265 0.99178 0.93736 0.88197 0.91569 0.91546 0.89052 0.94145 0.91917 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 8.37 71.98 0.60 -3.50 16 2 C 0.09 1.93 3.09 45.06 0.14 2.07 16 3 H 0.07 1.46 7.70 -2.39 -0.02 1.45 16 4 C -0.11 -2.37 3.02 -10.66 -0.03 -2.40 16 5 H 0.12 1.86 7.04 -2.39 -0.02 1.84 16 6 C 0.54 15.44 4.76 87.65 0.42 15.86 16 7 O -0.58 -21.25 15.13 -3.05 -0.05 -21.30 16 8 N -0.61 -16.39 2.98 -812.10 -2.42 -18.81 16 9 C 0.10 2.29 5.65 86.77 0.49 2.78 16 10 C -0.11 -2.73 4.88 31.55 0.15 -2.58 16 11 C -0.08 -2.31 0.55 -51.83 -0.03 -2.34 16 12 C 0.12 3.52 5.83 86.63 0.50 4.02 16 13 C -0.09 -2.57 4.65 30.35 0.14 -2.43 16 14 C -0.13 -4.32 5.92 30.72 0.18 -4.14 16 15 C 0.17 8.18 5.31 86.36 0.46 8.63 16 16 N -0.60 -28.96 2.59 -700.45 -1.82 -30.77 16 17 C -0.26 -13.57 9.57 84.03 0.80 -12.76 16 18 H 0.07 3.38 7.90 -2.91 -0.02 3.36 16 19 C -0.05 -2.57 4.84 84.86 0.41 -2.16 16 20 N -0.93 -55.10 11.43 21.65 0.25 -54.86 16 21 Si 0.96 43.90 29.60 68.60 2.03 45.93 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 C 0.17 7.00 5.18 86.01 0.45 7.45 16 26 C -0.11 -2.05 6.55 31.80 0.21 -1.84 16 27 C 0.04 0.66 6.56 86.65 0.57 1.23 16 28 N -0.54 -11.40 5.18 -884.06 -4.58 -15.98 16 29 C 0.02 0.27 9.41 127.69 1.20 1.48 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.55 7.09 -2.39 -0.02 1.53 16 32 H 0.05 1.58 6.89 -2.39 -0.02 1.56 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 1.52 7.87 -2.39 -0.02 1.50 16 35 H 0.07 2.35 7.67 -2.39 -0.02 2.33 16 36 H 0.09 1.94 7.99 -2.39 -0.02 1.92 16 37 H 0.08 2.10 8.00 -2.39 -0.02 2.08 16 38 H 0.05 1.73 7.94 -2.39 -0.02 1.71 16 39 H 0.09 1.96 8.10 -2.39 -0.02 1.94 16 40 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.06 2.09 7.40 -2.39 -0.02 2.08 16 43 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 44 H 0.05 2.57 6.19 -2.39 -0.01 2.55 16 45 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 46 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 47 H 0.04 1.87 7.41 -2.39 -0.02 1.85 16 48 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 49 H 0.07 1.66 6.95 -2.39 -0.02 1.64 16 50 H 0.07 0.81 8.00 -2.39 -0.02 0.79 16 51 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.04 0.56 7.99 -2.39 -0.02 0.54 16 53 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 54 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -68.94 400.22 0.92 -68.01 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.85 Total: 18.40 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 6.67 Total: 9.36 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -8.57 Total: -120.42 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.30 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -68.94 0.92 -68.01 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040211764.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.963 kcal (2) G-P(sol) polarization free energy of solvation -68.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds