Wall clock time and date at job start Tue Mar 31 2020 19:51:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08994 * 110.06915 * 2 1
4 4 C 1.54002 * 109.91383 * 238.79237 * 2 1 3
5 5 H 1.09008 * 110.38875 * 120.46475 * 4 2 1
6 6 C 1.50696 * 110.30841 * 358.33892 * 4 2 1
7 7 O 1.21278 * 120.00169 * 275.38411 * 6 4 2
8 8 N 1.34783 * 119.99513 * 95.39225 * 6 4 2
9 9 C 1.48185 * 127.80219 * 359.97069 * 8 6 4
10 10 C 1.54508 * 104.62671 * 140.74797 * 9 8 6
11 11 C 1.53835 * 104.79145 * 23.81410 * 10 9 8
12 12 C 1.48254 * 127.79534 * 180.02562 * 8 6 4
13 13 C 1.52566 * 110.20349 * 118.73087 * 11 10 9
14 14 C 1.53125 * 109.55935 * 62.03877 * 13 11 10
15 15 C 1.53193 * 109.31890 * 60.48713 * 14 13 11
16 16 N 1.46929 * 108.89451 * 304.90397 * 15 14 13
17 17 C 1.36928 * 120.67679 * 234.03957 * 16 15 14
18 18 H 1.08008 * 120.00472 * 27.46252 * 17 16 15
19 19 C 1.38814 * 120.00016 * 207.45888 * 17 16 15
20 20 N 1.31624 * 119.99848 * 16.02064 * 19 17 16
21 21 Si 1.86801 * 120.00319 * 196.01832 * 19 17 16
22 22 H 1.48492 * 109.46843 * 90.00310 * 21 19 17
23 23 H 1.48505 * 109.46997 * 210.00540 * 21 19 17
24 24 H 1.48495 * 109.47191 * 330.00088 * 21 19 17
25 25 C 1.47031 * 118.64068 * 54.01714 * 16 15 14
26 26 C 1.54600 * 105.13873 * 239.42371 * 4 2 1
27 27 C 1.54936 * 102.92155 * 338.04294 * 26 4 2
28 28 N 1.47899 * 109.91831 * 121.20658 * 2 1 3
29 29 C 1.46902 * 111.00045 * 265.19582 * 28 2 1
30 30 H 1.09000 * 109.47034 * 184.03431 * 1 2 3
31 31 H 1.08995 * 109.46556 * 304.03646 * 1 2 3
32 32 H 1.09000 * 109.46440 * 64.03109 * 1 2 3
33 33 H 1.08994 * 110.40707 * 21.95638 * 9 8 6
34 34 H 1.09007 * 110.50235 * 259.58306 * 9 8 6
35 35 H 1.08994 * 110.37214 * 264.97969 * 10 9 8
36 36 H 1.09004 * 110.46484 * 142.69121 * 10 9 8
37 37 H 1.09004 * 110.42704 * 100.33126 * 12 8 6
38 38 H 1.09005 * 110.42798 * 337.85475 * 12 8 6
39 39 H 1.09002 * 109.49979 * 301.99270 * 13 11 10
40 40 H 1.09002 * 109.43522 * 182.04801 * 13 11 10
41 41 H 1.08999 * 109.50546 * 300.51947 * 14 13 11
42 42 H 1.09006 * 109.50027 * 180.44601 * 14 13 11
43 43 H 1.09001 * 109.56772 * 64.72513 * 15 14 13
44 44 H 1.09005 * 109.56664 * 184.96539 * 15 14 13
45 45 H 0.96999 * 120.00410 * 179.97438 * 20 19 17
46 46 H 1.08996 * 109.58680 * 67.02675 * 25 16 15
47 47 H 1.08999 * 109.58295 * 187.44864 * 25 16 15
48 48 H 1.08991 * 110.72463 * 96.40408 * 26 4 2
49 49 H 1.08999 * 110.71946 * 219.68709 * 26 4 2
50 50 H 1.08995 * 110.66925 * 155.84709 * 27 26 4
51 51 H 1.08998 * 110.67035 * 278.97980 * 27 26 4
52 52 H 1.08998 * 109.46816 * 302.72977 * 29 28 2
53 53 H 1.08997 * 109.47042 * 62.72506 * 29 28 2
54 54 H 1.08999 * 109.47260 * 182.72803 * 29 28 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9041 1.0238 0.0000
4 6 2.0546 -0.7502 -1.2384
5 1 2.6710 -0.0905 -1.8492
6 6 0.9045 -1.2894 -2.0493
7 8 0.4066 -2.3568 -1.7604
8 7 0.4294 -0.5853 -3.0958
9 6 0.9024 0.7262 -3.5980
10 6 0.8346 0.6024 -5.1366
11 6 -0.2109 -0.4957 -5.3966
12 6 -0.6851 -0.9476 -4.0038
13 6 -1.3822 0.0701 -6.1938
14 6 -0.8853 0.5610 -7.5565
15 6 -0.2755 -0.6142 -8.3270
16 7 0.7709 -1.2327 -7.5015
17 6 2.0384 -1.4016 -7.9914
18 1 2.4171 -0.7343 -8.7515
19 6 2.8367 -2.4306 -7.5109
20 7 2.2961 -3.4223 -6.8351
21 14 4.6782 -2.4079 -7.8235
22 1 5.3599 -1.6948 -6.7137
23 1 5.1843 -3.8019 -7.9011
24 1 4.9543 -1.7092 -9.1044
25 6 0.4293 -1.6659 -6.1386
26 6 2.9059 -1.9119 -0.6762
27 6 3.2682 -1.4186 0.7471
28 7 2.0339 -0.7205 1.1893
29 6 2.3213 0.2122 2.2873
30 1 -0.3633 -1.0251 0.0723
31 1 -0.3632 0.5752 0.8516
32 1 -0.3632 0.4500 -0.9239
33 1 1.9276 0.9091 -3.2762
34 1 0.2478 1.5262 -3.2519
35 1 1.8042 0.3056 -5.5365
36 1 0.5140 1.5446 -5.5810
37 1 -1.5942 -0.4170 -3.7208
38 1 -0.8524 -2.0247 -3.9899
39 1 -1.8256 0.9028 -5.6477
40 1 -2.1315 -0.7080 -6.3394
41 1 -0.1293 1.3328 -7.4117
42 1 -1.7214 0.9723 -8.1221
43 1 -1.0504 -1.3492 -8.5450
44 1 0.1584 -0.2535 -9.2596
45 1 2.8538 -4.1416 -6.4997
46 1 -0.2736 -2.4976 -6.1850
47 1 1.3341 -1.9780 -5.6170
48 1 2.3214 -2.8306 -0.6289
49 1 3.8052 -2.0559 -1.2750
50 1 3.4888 -2.2616 1.4019
51 1 4.1098 -0.7269 0.7120
52 1 3.0412 0.9584 1.9511
53 1 1.4001 0.7082 2.5931
54 1 2.7357 -0.3377 3.1322
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001040211770.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:51:26
Heat of formation + Delta-G solvation = -21.255960 kcal
Electronic energy + Delta-G solvation = -31839.692718 eV
Core-core repulsion = 28003.983446 eV
Total energy + Delta-G solvation = -3835.709273 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 335.231 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-41.80008 -40.51619 -38.86475 -37.23018 -34.90372 -33.56715 -32.69911 -32.26834
-31.59585 -30.48624 -28.16402 -27.26269 -26.47121 -25.86774 -24.29816 -23.87167
-22.74589 -22.01649 -21.66690 -19.96618 -19.24020 -18.55222 -18.14571 -17.23865
-16.83270 -16.72416 -16.54538 -15.90644 -15.75287 -15.50922 -15.34410 -15.22737
-14.90940 -14.54041 -14.18556 -14.13418 -13.94490 -13.78040 -13.55729 -13.46373
-13.22899 -13.16117 -13.07346 -12.85503 -12.74402 -12.72078 -12.40689 -12.32021
-12.22700 -12.12666 -12.08548 -11.94115 -11.81579 -11.69429 -11.61536 -11.33139
-11.14833 -11.00587 -10.72685 -10.53636 -9.64877 -9.41274 -8.66697 -7.86024
-5.31743 1.42874 1.43506 1.53135 1.62750 2.00153 2.49426 2.95499
3.26358 3.35708 3.49846 3.56414 3.73150 3.81349 3.97170 3.98303
4.10135 4.17360 4.26591 4.30421 4.36320 4.41299 4.43139 4.46875
4.48948 4.52185 4.65685 4.67823 4.70345 4.77328 4.78872 4.82609
4.88920 4.89697 4.92744 4.96634 5.03290 5.03878 5.06380 5.16597
5.19406 5.23353 5.29443 5.30984 5.42539 5.47308 5.56182 5.62330
5.74809 5.79871 5.87208 6.10754 6.38337 6.63935 7.14738 7.20189
7.88330 8.39859 9.18982
Molecular weight = 335.23amu
Principal moments of inertia in cm(-1)
A = 0.012593 B = 0.004060 C = 0.003357
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2222.992851 B = 6895.076512 C = 8339.775884
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.089 3.911
3 H 0.086 0.914
4 C -0.114 4.114
5 H 0.110 0.890
6 C 0.544 3.456
7 O -0.587 6.587
8 N -0.621 5.621
9 C 0.103 3.897
10 C -0.106 4.106
11 C -0.087 4.087
12 C 0.120 3.880
13 C -0.091 4.091
14 C -0.121 4.121
15 C 0.135 3.865
16 N -0.605 5.605
17 C -0.251 4.251
18 H 0.070 0.930
19 C -0.052 4.052
20 N -0.938 5.938
21 Si 0.960 3.040
22 H -0.284 1.284
23 H -0.302 1.302
24 H -0.264 1.264
25 C 0.206 3.794
26 C -0.119 4.119
27 C 0.047 3.953
28 N -0.538 5.538
29 C 0.017 3.983
30 H 0.037 0.963
31 H 0.072 0.928
32 H 0.061 0.939
33 H 0.086 0.914
34 H 0.106 0.894
35 H 0.046 0.954
36 H 0.099 0.901
37 H 0.095 0.905
38 H 0.040 0.960
39 H 0.091 0.909
40 H 0.047 0.953
41 H 0.068 0.932
42 H 0.083 0.917
43 H 0.003 0.997
44 H 0.052 0.948
45 H 0.244 0.756
46 H -0.031 1.031
47 H 0.046 0.954
48 H 0.060 0.940
49 H 0.079 0.921
50 H 0.089 0.911
51 H 0.067 0.933
52 H 0.040 0.960
53 H 0.074 0.926
54 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.114 15.956 13.955 21.302
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.020 4.020
3 H 0.104 0.896
4 C -0.136 4.136
5 H 0.128 0.872
6 C 0.335 3.665
7 O -0.468 6.468
8 N -0.353 5.353
9 C -0.019 4.019
10 C -0.145 4.145
11 C -0.089 4.089
12 C -0.003 4.003
13 C -0.129 4.129
14 C -0.159 4.159
15 C 0.009 3.991
16 N -0.328 5.328
17 C -0.381 4.381
18 H 0.087 0.913
19 C -0.247 4.247
20 N -0.585 5.585
21 Si 0.788 3.212
22 H -0.211 1.211
23 H -0.229 1.229
24 H -0.189 1.189
25 C 0.080 3.920
26 C -0.157 4.157
27 C -0.081 4.081
28 N -0.263 5.263
29 C -0.131 4.131
30 H 0.057 0.943
31 H 0.091 0.909
32 H 0.080 0.920
33 H 0.105 0.895
34 H 0.124 0.876
35 H 0.064 0.936
36 H 0.118 0.882
37 H 0.113 0.887
38 H 0.058 0.942
39 H 0.109 0.891
40 H 0.066 0.934
41 H 0.086 0.914
42 H 0.101 0.899
43 H 0.021 0.979
44 H 0.071 0.929
45 H 0.053 0.947
46 H -0.013 1.013
47 H 0.065 0.935
48 H 0.079 0.921
49 H 0.098 0.902
50 H 0.108 0.892
51 H 0.085 0.915
52 H 0.059 0.941
53 H 0.092 0.908
54 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -2.639 14.859 14.425 20.876
hybrid contribution 1.517 -0.810 -0.854 1.920
sum -1.122 14.049 13.571 19.565
Atomic orbital electron populations
1.21848 0.94210 1.01590 1.02104 1.22216 0.96244 0.96163 0.87378
0.89632 1.22318 0.94910 0.99402 0.96955 0.87209 1.20321 0.83910
0.83148 0.79141 1.90656 1.61869 1.24104 1.70135 1.49133 1.34871
1.22386 1.28912 1.22713 1.01295 0.84269 0.93596 1.22396 0.98641
0.98754 0.94662 1.21649 0.96807 0.96983 0.93501 1.22286 0.90047
0.99700 0.88304 1.21376 0.95304 1.00275 0.95896 1.21918 1.00411
0.97567 0.96054 1.21130 0.90274 0.93760 0.93901 1.44298 1.07203
1.70696 1.10620 1.19500 0.90192 1.07987 1.20441 0.91252 1.25762
1.02464 0.94847 1.01633 1.70220 1.34922 1.10635 1.42691 0.85366
0.81165 0.76192 0.78431 1.21064 1.22876 1.18870 1.20371 0.96099
0.90654 0.84848 1.22507 0.99006 0.97449 0.96758 1.23188 0.91505
0.98973 0.94411 1.64673 1.27287 1.27379 1.06959 1.22571 1.01408
0.95015 0.94089 0.94334 0.90869 0.91963 0.89540 0.87571 0.93560
0.88225 0.88669 0.94162 0.89080 0.93378 0.91384 0.89866 0.97872
0.92927 0.94692 1.01260 0.93509 0.92113 0.90214 0.89242 0.91510
0.94117 0.90761 0.90469
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.27 8.37 71.98 0.60 -2.67 16
2 C 0.09 1.91 3.09 45.06 0.14 2.05 16
3 H 0.09 1.40 7.69 -2.39 -0.02 1.38 16
4 C -0.11 -3.03 3.06 -10.66 -0.03 -3.07 16
5 H 0.11 2.50 6.45 -2.38 -0.02 2.48 16
6 C 0.54 19.03 4.82 87.65 0.42 19.45 16
7 O -0.59 -26.09 15.21 -3.02 -0.05 -26.13 16
8 N -0.62 -19.66 2.90 -808.26 -2.34 -22.00 16
9 C 0.10 2.43 6.92 86.57 0.60 3.03 16
10 C -0.11 -3.16 5.58 31.39 0.18 -2.99 16
11 C -0.09 -3.01 0.68 -51.86 -0.04 -3.05 16
12 C 0.12 4.03 6.13 86.35 0.53 4.56 16
13 C -0.09 -2.57 4.45 30.49 0.14 -2.43 16
14 C -0.12 -3.51 5.86 30.70 0.18 -3.33 16
15 C 0.13 5.39 6.50 86.36 0.56 5.96 16
16 N -0.61 -29.92 2.79 -699.87 -1.95 -31.88 16
17 C -0.25 -13.65 9.60 84.04 0.81 -12.84 16
18 H 0.07 3.65 7.88 -2.91 -0.02 3.62 16
19 C -0.05 -2.95 4.95 84.86 0.42 -2.53 16
20 N -0.94 -58.00 11.11 21.65 0.24 -57.76 16
21 Si 0.96 45.40 29.58 68.60 2.03 47.43 16
22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16
23 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16
24 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16
25 C 0.21 10.10 3.63 86.16 0.31 10.41 16
26 C -0.12 -3.26 6.56 31.80 0.21 -3.06 16
27 C 0.05 0.96 6.56 86.65 0.57 1.53 16
28 N -0.54 -11.58 5.18 -884.07 -4.58 -16.16 16
29 C 0.02 0.25 9.41 127.69 1.20 1.45 16
30 H 0.04 1.19 7.02 -2.39 -0.02 1.18 16
31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16
32 H 0.06 1.41 7.09 -2.39 -0.02 1.39 16
33 H 0.09 1.80 6.48 -2.39 -0.02 1.79 16
34 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16
35 H 0.05 1.77 7.65 -2.39 -0.02 1.75 16
36 H 0.10 2.39 6.51 -2.38 -0.02 2.37 16
37 H 0.10 2.57 7.83 -2.38 -0.02 2.55 16
38 H 0.04 1.68 7.55 -2.38 -0.02 1.66 16
39 H 0.09 1.90 8.13 -2.39 -0.02 1.88 16
40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16
41 H 0.07 1.91 6.61 -2.39 -0.02 1.90 16
42 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16
43 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16
44 H 0.05 2.06 7.94 -2.38 -0.02 2.04 16
45 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16
46 H -0.03 -1.72 8.09 -2.39 -0.02 -1.74 16
47 H 0.05 2.69 6.01 -2.39 -0.01 2.68 16
48 H 0.06 2.11 6.92 -2.39 -0.02 2.09 16
49 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16
50 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16
51 H 0.07 1.10 8.00 -2.39 -0.02 1.08 16
52 H 0.04 0.49 7.99 -2.39 -0.02 0.48 16
53 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
54 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
Total: -1.00 -75.37 397.66 1.00 -74.37
By element:
Atomic # 1 Polarization: 18.80 SS G_CDS: 0.86 Total: 19.66 kcal
Atomic # 6 Polarization: 5.68 SS G_CDS: 6.79 Total: 12.48 kcal
Atomic # 7 Polarization: -119.16 SS G_CDS: -8.63 Total: -127.80 kcal
Atomic # 8 Polarization: -26.09 SS G_CDS: -0.05 Total: -26.13 kcal
Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal
Total: -75.37 1.00 -74.37 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001040211770.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.112 kcal
(2) G-P(sol) polarization free energy of solvation -75.367 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.255 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.999 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.368 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.256 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds