Wall clock time and date at job start Tue Mar 31 2020 19:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.62762 * 2 1 4 4 C 1.55139 * 110.85863 * 236.78829 * 2 1 3 5 5 C 1.54904 * 101.65458 * 205.89499 * 4 2 1 6 6 N 1.47849 * 104.79658 * 37.06807 * 5 4 2 7 7 C 1.46894 * 111.00307 * 213.63808 * 6 5 4 8 8 C 1.50705 * 109.47289 * 290.84726 * 7 6 5 9 9 O 1.21285 * 119.99844 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00317 * 180.02562 * 8 7 6 11 11 C 1.48165 * 127.02690 * 359.97047 * 10 8 7 12 12 C 1.55039 * 103.31550 * 141.00051 * 11 10 8 13 13 C 1.54157 * 102.73905 * 36.98395 * 12 11 10 14 14 C 1.47616 * 127.02891 * 179.97438 * 10 8 7 15 15 C 1.52486 * 110.05280 * 219.40763 * 13 12 11 16 16 C 1.53128 * 109.60487 * 178.25649 * 15 13 12 17 17 C 1.52760 * 109.35541 * 60.39539 * 16 15 13 18 18 N 1.46929 * 109.12229 * 305.14820 * 17 16 15 19 19 C 1.36943 * 120.67699 * 233.99955 * 18 17 16 20 20 H 1.08003 * 119.99761 * 152.10159 * 19 18 17 21 21 C 1.38807 * 120.00118 * 332.10324 * 19 18 17 22 22 N 1.31623 * 120.00152 * 342.70913 * 21 19 18 23 23 Si 1.86796 * 120.00148 * 162.71294 * 21 19 18 24 24 H 1.48508 * 109.47318 * 270.00158 * 23 21 19 25 25 H 1.48499 * 109.46878 * 29.99913 * 23 21 19 26 26 H 1.48494 * 109.47291 * 150.00043 * 23 21 19 27 27 C 1.47035 * 118.64294 * 53.72558 * 18 17 16 28 28 C 1.47447 * 108.56718 * 335.90836 * 6 5 4 29 29 H 1.08993 * 109.46965 * 296.89512 * 1 2 3 30 30 H 1.08993 * 109.46758 * 56.89837 * 1 2 3 31 31 H 1.09001 * 109.46589 * 176.89373 * 1 2 3 32 32 H 1.08994 * 110.98866 * 323.98699 * 4 2 1 33 33 H 1.08997 * 110.98930 * 87.76150 * 4 2 1 34 34 H 1.09001 * 110.37389 * 278.24568 * 5 4 2 35 35 H 1.08995 * 110.37519 * 155.89711 * 5 4 2 36 36 H 1.08999 * 109.47811 * 170.84050 * 7 6 5 37 37 H 1.09005 * 109.47329 * 50.84124 * 7 6 5 38 38 H 1.09002 * 110.64808 * 259.45290 * 11 10 8 39 39 H 1.08994 * 110.65140 * 22.37628 * 11 10 8 40 40 H 1.09002 * 110.75732 * 278.66961 * 12 11 10 41 41 H 1.09005 * 110.75900 * 155.29722 * 12 11 10 42 42 H 1.08999 * 109.97079 * 85.98616 * 14 10 8 43 43 H 1.09002 * 109.96896 * 324.71269 * 14 10 8 44 44 H 1.09005 * 109.45255 * 298.29931 * 15 13 12 45 45 H 1.08999 * 109.45148 * 58.24635 * 15 13 12 46 46 H 1.09002 * 109.50246 * 180.45874 * 16 15 13 47 47 H 1.08994 * 109.50278 * 300.57692 * 16 15 13 48 48 H 1.08994 * 109.49042 * 185.22510 * 17 16 15 49 49 H 1.08998 * 109.41313 * 65.01906 * 17 16 15 50 50 H 0.96999 * 120.00086 * 179.97438 * 22 21 19 51 51 H 1.09001 * 109.57825 * 67.25427 * 27 18 17 52 52 H 1.08994 * 109.58514 * 187.53003 * 27 18 17 53 53 H 1.08992 * 109.89220 * 120.39460 * 28 6 5 54 54 H 1.09001 * 109.88647 * 241.42028 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9141 1.0201 0.0000 4 6 2.0824 -0.7941 -1.2129 5 6 3.4692 -1.2424 -0.6881 6 7 3.2515 -1.5456 0.7425 7 6 4.4410 -1.2136 1.5380 8 6 5.5537 -2.1730 1.2022 9 8 5.3733 -3.0475 0.3814 10 7 6.7489 -2.0600 1.8147 11 6 7.1375 -1.0579 2.8345 12 6 8.0047 -1.8754 3.8261 13 6 8.7696 -2.8374 2.8955 14 6 7.9383 -2.9091 1.6066 15 6 8.8706 -4.2166 3.5382 16 6 9.5936 -5.1747 2.5874 17 6 11.0001 -4.6472 2.3098 18 7 10.9070 -3.2694 1.8080 19 6 11.4997 -2.9150 0.6255 20 1 11.0933 -2.1039 0.0395 21 6 12.6228 -3.5983 0.1799 22 7 13.3187 -4.3378 1.0174 23 14 13.1469 -3.4682 -1.6084 24 1 12.4878 -4.5404 -2.3966 25 1 12.7482 -2.1425 -2.1457 26 1 14.6211 -3.6183 -1.7043 27 6 10.1594 -2.2804 2.5985 28 6 2.0756 -0.7884 1.2093 29 1 -0.3633 0.4648 0.9165 30 1 -0.3632 0.5612 -0.8608 31 1 -0.3632 -1.0262 -0.0557 32 1 1.4523 -1.6550 -1.4356 33 1 2.1843 -0.1509 -2.0870 34 1 4.1954 -0.4371 -0.7990 35 1 3.8055 -2.1335 -1.2179 36 1 4.2022 -1.2911 2.5986 37 1 4.7580 -0.1958 1.3104 38 1 7.7223 -0.2566 2.3827 39 1 6.2560 -0.6547 3.3328 40 1 7.3760 -2.4300 4.5227 41 1 8.6961 -1.2249 4.3619 42 1 8.5217 -2.5331 0.7661 43 1 7.6326 -3.9381 1.4174 44 1 9.4285 -4.1420 4.4717 45 1 7.8695 -4.5958 3.7430 46 1 9.6577 -6.1620 3.0450 47 1 9.0415 -5.2426 1.6501 48 1 11.4834 -5.2762 1.5623 49 1 11.5809 -4.6615 3.2320 50 1 14.1033 -4.8155 0.7059 51 1 10.6840 -2.0890 3.5346 52 1 10.0704 -1.3528 2.0332 53 1 1.3143 -1.4758 1.5778 54 1 2.3686 -0.1001 2.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040395334.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:04 Heat of formation + Delta-G solvation = -26.557419 kcal Electronic energy + Delta-G solvation = -30573.277422 eV Core-core repulsion = 26737.338261 eV Total energy + Delta-G solvation = -3835.939161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.52985 -40.39003 -39.14396 -37.28715 -34.86451 -34.27565 -32.62158 -32.35575 -30.81701 -30.06589 -28.94026 -27.29976 -26.81493 -25.41875 -24.39472 -23.81203 -22.24063 -22.06887 -21.12166 -20.25257 -19.53074 -18.63424 -18.14454 -17.32357 -17.04745 -16.83611 -16.18851 -15.89991 -15.76085 -15.71309 -15.34061 -14.82356 -14.70570 -14.61765 -14.53092 -14.28087 -14.04286 -13.87709 -13.77828 -13.47329 -13.22882 -13.06061 -13.00711 -12.84969 -12.77112 -12.63382 -12.54544 -12.36995 -12.32149 -12.06221 -11.92621 -11.82857 -11.82147 -11.64128 -11.52008 -11.48424 -11.07807 -11.02934 -10.76074 -10.52443 -9.67533 -9.28002 -8.66742 -7.88136 -5.32088 1.41689 1.45117 1.51913 1.65897 1.91818 2.48387 3.01616 3.25664 3.42428 3.60492 3.65897 3.73555 3.80728 3.87166 3.91579 3.98787 4.22994 4.27547 4.28239 4.31175 4.35157 4.40289 4.49489 4.53300 4.58860 4.62059 4.63755 4.72547 4.75094 4.85821 4.89162 4.90073 4.95543 4.98886 5.04881 5.07666 5.08868 5.10310 5.14838 5.18562 5.20804 5.29267 5.34986 5.40350 5.47666 5.49192 5.57221 5.64486 5.76851 5.91520 6.03781 6.38383 6.64791 7.14544 7.22708 7.86701 8.37476 9.17562 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.002724 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.494205 B =10277.681302 C =11284.749673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.122 4.122 5 C 0.047 3.953 6 N -0.538 5.538 7 C 0.048 3.952 8 C 0.519 3.481 9 O -0.579 6.579 10 N -0.623 5.623 11 C 0.099 3.901 12 C -0.115 4.115 13 C -0.077 4.077 14 C 0.137 3.863 15 C -0.086 4.086 16 C -0.138 4.138 17 C 0.177 3.823 18 N -0.607 5.607 19 C -0.254 4.254 20 H 0.060 0.940 21 C -0.049 4.049 22 N -0.931 5.931 23 Si 0.957 3.043 24 H -0.292 1.292 25 H -0.270 1.270 26 H -0.292 1.292 27 C 0.161 3.839 28 C 0.046 3.954 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.038 0.962 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.038 0.962 48 H 0.047 0.953 49 H 0.002 0.998 50 H 0.249 0.751 51 H 0.027 0.973 52 H 0.052 0.948 53 H 0.080 0.920 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.954 12.224 6.789 27.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.128 4.128 3 H 0.102 0.898 4 C -0.160 4.160 5 C -0.081 4.081 6 N -0.263 5.263 7 C -0.083 4.083 8 C 0.309 3.691 9 O -0.458 6.458 10 N -0.358 5.358 11 C -0.023 4.023 12 C -0.153 4.153 13 C -0.080 4.080 14 C 0.014 3.986 15 C -0.124 4.124 16 C -0.177 4.177 17 C 0.051 3.949 18 N -0.330 5.330 19 C -0.384 4.384 20 H 0.078 0.922 21 C -0.244 4.244 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.219 1.219 25 H -0.194 1.194 26 H -0.218 1.218 27 C 0.036 3.964 28 C -0.080 4.080 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.134 0.866 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.065 0.935 49 H 0.020 0.980 50 H 0.058 0.942 51 H 0.045 0.955 52 H 0.070 0.930 53 H 0.098 0.902 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.076 11.165 6.339 27.286 hybrid contribution 1.454 0.109 -1.503 2.094 sum -22.622 11.273 4.837 25.734 Atomic orbital electron populations 1.21696 0.93016 1.02093 1.02595 1.22371 0.97358 0.99092 0.93993 0.89772 1.22794 0.94734 1.00111 0.98367 1.22960 0.97703 0.98837 0.88578 1.63176 1.03464 1.56886 1.02769 1.22180 0.88863 0.96133 1.01101 1.20971 0.82426 0.85573 0.80122 1.90680 1.81924 1.37622 1.35581 1.49103 1.11024 1.33254 1.42395 1.22844 1.00426 0.90804 0.88208 1.22754 0.98473 0.97429 0.96633 1.21459 0.95475 0.97032 0.94014 1.21714 0.85089 0.94119 0.97668 1.21331 0.99816 0.93404 0.97854 1.22040 0.97879 0.98909 0.98855 1.20468 0.92514 0.85790 0.96083 1.44258 1.60608 1.05464 1.22673 1.19385 1.05452 1.16699 0.96873 0.92184 1.25674 0.96067 1.01402 1.01307 1.70168 1.17934 1.35527 1.34107 0.85411 0.76676 0.78009 0.81261 1.21910 1.19442 1.21826 1.21028 0.89678 0.91543 0.94172 1.23017 0.91804 0.95748 0.97475 0.91373 0.91963 0.92796 0.91109 0.89841 0.94152 0.92800 0.85286 0.89825 0.90359 0.86588 0.89204 0.87991 0.94365 0.93722 0.91077 0.91634 0.91517 0.94352 0.93460 0.98028 0.94185 0.95486 0.92952 0.90192 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.15 71.98 0.66 -0.65 16 2 C -0.11 -1.36 3.53 -9.61 -0.03 -1.39 16 3 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -2.03 6.53 31.98 0.21 -1.83 16 5 C 0.05 1.09 5.75 86.77 0.50 1.59 16 6 N -0.54 -11.87 4.86 -890.09 -4.33 -16.20 16 7 C 0.05 0.94 3.99 85.56 0.34 1.28 16 8 C 0.52 15.66 7.69 87.66 0.67 16.34 16 9 O -0.58 -23.55 15.38 -3.04 -0.05 -23.59 16 10 N -0.62 -17.60 3.30 -809.64 -2.67 -20.27 16 11 C 0.10 1.81 6.96 86.76 0.60 2.42 16 12 C -0.11 -2.30 6.15 31.68 0.19 -2.11 16 13 C -0.08 -2.39 0.62 -51.89 -0.03 -2.43 16 14 C 0.14 4.91 5.62 86.35 0.49 5.40 16 15 C -0.09 -2.72 4.43 30.47 0.13 -2.59 16 16 C -0.14 -5.39 5.85 30.56 0.18 -5.21 16 17 C 0.18 8.66 5.28 86.22 0.46 9.12 16 18 N -0.61 -30.18 2.80 -700.70 -1.97 -32.15 16 19 C -0.25 -14.10 9.59 84.03 0.81 -13.29 16 20 H 0.06 3.31 7.89 -2.91 -0.02 3.28 16 21 C -0.05 -2.79 4.91 84.86 0.42 -2.37 16 22 N -0.93 -55.79 11.19 21.65 0.24 -55.55 16 23 Si 0.96 46.35 29.59 68.60 2.03 48.38 16 24 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 27 C 0.16 6.25 4.84 86.16 0.42 6.66 16 28 C 0.05 0.67 6.46 86.65 0.56 1.23 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.58 8.11 -2.39 -0.02 0.57 16 32 H 0.07 1.26 8.03 -2.39 -0.02 1.24 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.04 0.92 7.62 -2.39 -0.02 0.90 16 35 H 0.05 1.65 7.38 -2.39 -0.02 1.64 16 36 H 0.13 1.78 7.79 -2.39 -0.02 1.76 16 37 H 0.08 1.29 7.85 -2.38 -0.02 1.28 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.12 1.21 7.24 -2.39 -0.02 1.19 16 40 H 0.09 1.55 7.84 -2.39 -0.02 1.53 16 41 H 0.10 1.73 7.79 -2.38 -0.02 1.71 16 42 H 0.04 1.64 7.63 -2.39 -0.02 1.62 16 43 H 0.04 1.83 6.34 -2.39 -0.02 1.82 16 44 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 47 H 0.04 1.63 6.58 -2.39 -0.02 1.61 16 48 H 0.05 2.67 6.03 -2.39 -0.01 2.65 16 49 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 50 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 51 H 0.03 1.03 8.09 -2.39 -0.02 1.01 16 52 H 0.05 2.01 7.91 -2.39 -0.02 1.99 16 53 H 0.08 1.17 7.82 -2.39 -0.02 1.15 16 54 H 0.08 0.77 7.55 -2.39 -0.02 0.76 16 Total: -1.00 -74.31 402.85 0.68 -73.64 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.85 Total: 13.56 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 6.57 Total: 12.17 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -8.72 Total: -124.16 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.05 Total: -23.59 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -74.31 0.68 -73.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040395334.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.080 kcal (2) G-P(sol) polarization free energy of solvation -74.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds