Wall clock time and date at job start Tue Mar 31 2020 19:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.90923 * 2 1 4 4 C 1.54000 * 109.91572 * 238.89651 * 2 1 3 5 5 H 1.08999 * 110.30536 * 120.20367 * 4 2 1 6 6 C 1.50697 * 110.30681 * 358.14445 * 4 2 1 7 7 O 1.21280 * 120.00103 * 275.64542 * 6 4 2 8 8 N 1.34781 * 120.00554 * 95.64503 * 6 4 2 9 9 C 1.47480 * 125.65549 * 0.02562 * 8 6 4 10 10 C 1.55022 * 104.90232 * 203.99716 * 9 8 6 11 11 C 1.54514 * 101.53238 * 323.62405 * 10 9 8 12 12 C 1.47168 * 125.66686 * 180.02562 * 8 6 4 13 13 C 1.52280 * 110.20310 * 276.41177 * 11 10 9 14 14 C 1.53315 * 109.41262 * 177.77956 * 13 11 10 15 15 N 1.46927 * 108.70969 * 53.50711 * 14 13 11 16 16 C 1.36937 * 120.56071 * 125.78223 * 15 14 13 17 17 H 1.08003 * 119.99958 * 330.54944 * 16 15 14 18 18 C 1.38806 * 120.00307 * 150.54906 * 16 15 14 19 19 N 1.31621 * 120.00299 * 344.50580 * 18 16 15 20 20 Si 1.86807 * 120.00322 * 164.50497 * 18 16 15 21 21 H 1.48497 * 109.46965 * 87.96156 * 20 18 16 22 22 H 1.48496 * 109.46645 * 327.96181 * 20 18 16 23 23 H 1.48500 * 109.47260 * 207.96343 * 20 18 16 24 24 C 1.46926 * 118.88363 * 306.05844 * 15 14 13 25 25 C 1.52273 * 110.21382 * 153.22257 * 11 10 9 26 26 C 1.54592 * 105.14492 * 239.22618 * 4 2 1 27 27 C 1.54940 * 102.91863 * 338.04311 * 26 4 2 28 28 N 1.47897 * 110.08487 * 121.21440 * 2 1 3 29 29 C 1.46905 * 110.99678 * 265.28829 * 28 2 1 30 30 H 1.09002 * 109.47039 * 185.26907 * 1 2 3 31 31 H 1.09001 * 109.46586 * 305.26578 * 1 2 3 32 32 H 1.08993 * 109.47060 * 65.26561 * 1 2 3 33 33 H 1.08997 * 110.36094 * 322.85170 * 9 8 6 34 34 H 1.09005 * 110.35119 * 85.03594 * 9 8 6 35 35 H 1.09004 * 111.01518 * 205.56537 * 10 9 8 36 36 H 1.08997 * 111.01619 * 81.68490 * 10 9 8 37 37 H 1.09003 * 109.91373 * 59.14221 * 12 8 6 38 38 H 1.09006 * 110.06355 * 297.96933 * 12 8 6 39 39 H 1.08998 * 109.48275 * 57.80322 * 13 11 10 40 40 H 1.09002 * 109.48154 * 297.75956 * 13 11 10 41 41 H 1.08996 * 109.60034 * 293.74249 * 14 13 11 42 42 H 1.09007 * 109.60153 * 173.27287 * 14 13 11 43 43 H 0.96994 * 120.00809 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.60166 * 173.71487 * 24 15 14 45 45 H 1.09004 * 109.59775 * 294.17896 * 24 15 14 46 46 H 1.08990 * 109.48264 * 302.20269 * 25 11 10 47 47 H 1.09004 * 109.48194 * 62.23090 * 25 11 10 48 48 H 1.08998 * 110.72632 * 96.39730 * 26 4 2 49 49 H 1.08997 * 110.72694 * 219.68515 * 26 4 2 50 50 H 1.08998 * 110.67128 * 278.98148 * 27 26 4 51 51 H 1.08999 * 110.66903 * 155.84785 * 27 26 4 52 52 H 1.09002 * 109.47211 * 59.99551 * 29 28 2 53 53 H 1.09000 * 109.47088 * 179.97438 * 29 28 2 54 54 H 1.09002 * 109.47020 * 299.99464 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0546 -0.7480 -1.2397 5 1 2.6670 -0.0847 -1.8506 6 6 0.9047 -1.2897 -2.0491 7 8 0.4071 -2.3565 -1.7571 8 7 0.4291 -0.5888 -3.0975 9 6 0.9379 0.7153 -3.5617 10 6 -0.2507 1.3600 -4.3199 11 6 -0.8911 0.1270 -4.9959 12 6 -0.6839 -0.9978 -3.9692 13 6 -0.1683 -0.1940 -6.2972 14 6 -0.7817 -1.4514 -6.9241 15 7 -2.2327 -1.2564 -7.0481 16 6 -2.8563 -1.4183 -8.2564 17 1 -2.3192 -1.2196 -9.1721 18 6 -4.1786 -1.8377 -8.3044 19 7 -4.7399 -2.3682 -7.2387 20 14 -5.1617 -1.6491 -9.8817 21 1 -4.9647 -2.8489 -10.7341 22 1 -4.6990 -0.4416 -10.6118 23 1 -6.6028 -1.5067 -9.5527 24 6 -3.0025 -0.8787 -5.8550 25 6 -2.3755 0.3692 -5.2338 26 6 2.9100 -1.9076 -0.6799 27 6 3.2734 -1.4143 0.7432 28 7 2.0379 -0.7199 1.1879 29 6 2.3245 0.2130 2.2860 30 1 -0.3633 -1.0233 0.0944 31 1 -0.3632 0.5934 0.8391 32 1 -0.3633 0.4300 -0.9333 33 1 1.2259 1.3342 -2.7119 34 1 1.7858 0.5746 -4.2320 35 1 0.1017 2.0746 -5.0638 36 1 -0.9471 1.8314 -3.6265 37 1 -1.5893 -1.1314 -3.3771 38 1 -0.4354 -1.9271 -4.4819 39 1 0.8881 -0.3681 -6.0929 40 1 -0.2721 0.6437 -6.9869 41 1 -0.5818 -2.3126 -6.2866 42 1 -0.3494 -1.6162 -7.9111 43 1 -5.6638 -2.6617 -7.2723 44 1 -4.0336 -0.6661 -6.1372 45 1 -2.9798 -1.6942 -5.1319 46 1 -2.8645 0.5895 -4.2850 47 1 -2.5021 1.2127 -5.9125 48 1 2.3282 -2.8280 -0.6322 49 1 3.8087 -2.0488 -1.2803 50 1 4.1130 -0.7201 0.7072 51 1 3.4975 -2.2571 1.3971 52 1 1.4118 0.7416 2.5613 53 1 2.6960 -0.3426 3.1471 54 1 3.0780 0.9321 1.9646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040706545.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:30 Heat of formation + Delta-G solvation = -24.820672 kcal Electronic energy + Delta-G solvation = -31251.830492 eV Core-core repulsion = 27415.966642 eV Total energy + Delta-G solvation = -3835.863850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.93302 -40.60238 -38.87356 -37.37609 -34.79923 -33.41704 -32.74365 -32.35048 -31.68904 -30.49969 -28.63383 -27.29387 -26.11283 -25.86610 -24.46954 -23.76733 -22.54597 -22.22622 -21.78212 -19.74110 -19.57604 -18.47362 -18.11602 -17.27178 -16.93028 -16.79991 -16.52622 -15.95207 -15.73620 -15.50635 -15.43860 -15.13892 -14.86911 -14.61707 -14.33561 -14.19647 -13.83362 -13.71974 -13.58757 -13.46498 -13.19291 -13.08368 -13.07620 -12.95921 -12.75241 -12.70128 -12.57360 -12.43444 -12.26171 -12.12899 -12.02294 -11.98345 -11.90944 -11.86166 -11.69392 -11.43496 -11.06419 -11.00480 -10.76567 -10.52744 -9.62887 -9.37601 -8.64035 -7.86738 -5.34883 1.45923 1.46772 1.56798 1.60768 1.98089 2.50893 2.98278 3.26348 3.35241 3.53021 3.59625 3.63725 3.71828 3.83382 3.86928 4.13118 4.22999 4.26085 4.29344 4.29729 4.43411 4.43845 4.49004 4.50762 4.54534 4.64973 4.67080 4.69869 4.74682 4.76040 4.78269 4.80019 4.87025 4.94477 4.96707 5.01956 5.04643 5.05255 5.12153 5.16387 5.22873 5.28417 5.31374 5.36043 5.40077 5.44148 5.53663 5.65080 5.77885 5.92078 6.12546 6.39959 6.59012 7.15333 7.19337 7.86746 8.39202 9.19254 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.027263 B = 0.002600 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.795224 B =10766.450235 C =10839.542202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.089 0.911 4 C -0.109 4.109 5 H 0.126 0.874 6 C 0.536 3.464 7 O -0.589 6.589 8 N -0.615 5.615 9 C 0.097 3.903 10 C -0.114 4.114 11 C -0.052 4.052 12 C 0.127 3.873 13 C -0.102 4.102 14 C 0.137 3.863 15 N -0.608 5.608 16 C -0.261 4.261 17 H 0.068 0.932 18 C -0.054 4.054 19 N -0.939 5.939 20 Si 0.969 3.031 21 H -0.286 1.286 22 H -0.266 1.266 23 H -0.294 1.294 24 C 0.179 3.821 25 C -0.112 4.112 26 C -0.115 4.115 27 C 0.044 3.956 28 N -0.544 5.544 29 C 0.018 3.982 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.000 1.000 42 H 0.053 0.947 43 H 0.249 0.751 44 H 0.049 0.951 45 H -0.017 1.017 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.096 0.904 50 H 0.071 0.929 51 H 0.086 0.914 52 H 0.067 0.933 53 H 0.075 0.925 54 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.915 13.501 15.195 28.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 H 0.107 0.893 4 C -0.131 4.131 5 H 0.144 0.856 6 C 0.326 3.674 7 O -0.469 6.469 8 N -0.348 5.348 9 C -0.024 4.024 10 C -0.152 4.152 11 C -0.053 4.053 12 C 0.004 3.996 13 C -0.141 4.141 14 C 0.012 3.988 15 N -0.331 5.331 16 C -0.391 4.391 17 H 0.086 0.914 18 C -0.249 4.249 19 N -0.585 5.585 20 Si 0.796 3.204 21 H -0.213 1.213 22 H -0.191 1.191 23 H -0.220 1.220 24 C 0.053 3.947 25 C -0.151 4.151 26 C -0.154 4.154 27 C -0.084 4.084 28 N -0.269 5.269 29 C -0.131 4.131 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.018 0.982 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.001 0.999 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.115 0.885 50 H 0.089 0.911 51 H 0.104 0.896 52 H 0.086 0.914 53 H 0.094 0.906 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.156 12.483 15.626 27.694 hybrid contribution -0.961 -0.472 -1.092 1.530 sum 18.195 12.011 14.534 26.202 Atomic orbital electron populations 1.21882 0.95208 1.01302 1.01787 1.22206 0.95396 0.96605 0.87982 0.89345 1.22339 0.94573 0.99609 0.96542 0.85561 1.20602 0.84402 0.83416 0.78980 1.90692 1.61805 1.24733 1.69665 1.48761 1.34219 1.22686 1.29159 1.22673 0.97441 0.82415 0.99893 1.22859 0.96643 0.95950 0.99733 1.20871 0.95693 0.94695 0.94050 1.21754 0.88852 0.97810 0.91161 1.21744 0.98591 0.98403 0.95369 1.21126 0.84439 0.95218 0.98018 1.44267 1.02889 1.79758 1.06212 1.19520 0.95661 1.37940 0.86008 0.91432 1.25895 1.00275 0.98552 1.00149 1.70203 1.13119 1.44308 1.30852 0.85270 0.77455 0.78190 0.79446 1.21268 1.19100 1.22043 1.20460 0.95444 0.92156 0.86625 1.21809 0.94539 0.98856 0.99925 1.22524 0.99289 0.97081 0.96472 1.23232 0.91274 0.98955 0.94908 1.64628 1.27636 1.27610 1.06996 1.22551 1.01122 0.95146 0.94233 0.94722 0.91385 0.92334 0.87792 0.89289 0.87247 0.90036 0.94514 0.94257 0.90233 0.90905 0.98244 0.92831 0.94242 0.93207 0.99867 0.91916 0.91510 0.92376 0.88523 0.91078 0.89602 0.91369 0.90636 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.38 71.98 0.60 -2.67 16 2 C 0.09 1.52 3.08 45.06 0.14 1.66 16 3 H 0.09 1.06 7.73 -2.39 -0.02 1.04 16 4 C -0.11 -2.07 2.80 -10.66 -0.03 -2.10 16 5 H 0.13 1.52 7.06 -2.39 -0.02 1.51 16 6 C 0.54 15.50 4.74 87.66 0.42 15.92 16 7 O -0.59 -23.60 15.30 -3.03 -0.05 -23.64 16 8 N -0.62 -16.30 2.89 -812.27 -2.35 -18.65 16 9 C 0.10 1.58 5.94 86.88 0.52 2.09 16 10 C -0.11 -2.13 5.99 31.80 0.19 -1.94 16 11 C -0.05 -1.54 0.53 -51.91 -0.03 -1.57 16 12 C 0.13 4.37 5.07 86.49 0.44 4.81 16 13 C -0.10 -3.11 4.78 30.46 0.15 -2.97 16 14 C 0.14 5.76 6.22 86.40 0.54 6.30 16 15 N -0.61 -30.97 2.98 -699.52 -2.09 -33.06 16 16 C -0.26 -14.54 9.57 84.03 0.80 -13.74 16 17 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 18 C -0.05 -3.06 4.94 84.86 0.42 -2.64 16 19 N -0.94 -57.54 11.21 21.65 0.24 -57.29 16 20 Si 0.97 45.54 29.58 68.60 2.03 47.57 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 C 0.18 8.84 5.00 86.25 0.43 9.27 16 25 C -0.11 -4.04 4.69 30.30 0.14 -3.90 16 26 C -0.12 -2.20 6.56 31.80 0.21 -1.99 16 27 C 0.04 0.65 6.56 86.65 0.57 1.22 16 28 N -0.54 -9.83 5.19 -884.04 -4.59 -14.42 16 29 C 0.02 0.21 9.40 127.69 1.20 1.41 16 30 H 0.03 1.07 7.10 -2.39 -0.02 1.05 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.34 7.01 -2.39 -0.02 1.33 16 33 H 0.10 1.07 7.49 -2.39 -0.02 1.05 16 34 H 0.09 1.16 7.76 -2.38 -0.02 1.14 16 35 H 0.11 1.57 8.01 -2.38 -0.02 1.55 16 36 H 0.08 1.47 8.01 -2.39 -0.02 1.45 16 37 H 0.04 1.46 7.59 -2.39 -0.02 1.44 16 38 H 0.04 1.61 6.07 -2.38 -0.01 1.60 16 39 H 0.08 1.99 7.49 -2.39 -0.02 1.97 16 40 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.00 -0.01 6.53 -2.39 -0.02 -0.03 16 42 H 0.05 2.20 7.93 -2.38 -0.02 2.18 16 43 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.05 2.80 6.10 -2.39 -0.01 2.78 16 45 H -0.02 -0.92 7.47 -2.38 -0.02 -0.94 16 46 H 0.06 2.09 8.10 -2.39 -0.02 2.07 16 47 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 48 H 0.06 1.57 6.92 -2.39 -0.02 1.56 16 49 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.07 0.71 7.96 -2.39 -0.02 0.70 16 51 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 54 H 0.04 0.39 8.00 -2.39 -0.02 0.38 16 Total: -1.00 -76.59 396.22 0.76 -75.83 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.86 Total: 14.51 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 6.70 Total: 9.15 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -8.78 Total: -123.42 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -76.59 0.76 -75.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040706545.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.010 kcal (2) G-P(sol) polarization free energy of solvation -76.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds