Wall clock time and date at job start Tue Mar 31 2020 19:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46095 * 2 1 4 4 C 1.53036 * 109.45691 * 119.98014 * 2 1 3 5 5 C 1.53118 * 109.28007 * 179.19337 * 4 2 1 6 6 H 1.08993 * 109.52283 * 62.30919 * 5 4 2 7 7 C 1.50693 * 109.52178 * 182.44186 * 5 4 2 8 8 O 1.21280 * 120.00558 * 359.97438 * 7 5 4 9 9 N 1.34780 * 120.00092 * 180.02562 * 7 5 4 10 10 C 1.47568 * 125.67079 * 359.68976 * 9 7 5 11 11 C 1.55437 * 104.88064 * 156.03368 * 10 9 7 12 12 C 1.53659 * 101.31050 * 35.82293 * 11 10 9 13 13 C 1.53650 * 111.42147 * 204.77196 * 12 11 10 14 14 C 1.55187 * 101.41974 * 272.73530 * 13 12 11 15 15 N 1.47560 * 105.00882 * 324.50626 * 14 13 12 16 16 C 1.36929 * 125.67727 * 203.89531 * 15 14 13 17 17 H 1.07995 * 120.00216 * 179.97438 * 16 15 14 18 18 C 1.38822 * 119.99689 * 359.96139 * 16 15 14 19 19 N 1.31619 * 120.00101 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99591 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47459 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47247 * 120.00211 * 20 18 16 23 23 H 1.48504 * 109.46628 * 239.99603 * 20 18 16 24 24 C 1.47409 * 108.65050 * 23.86013 * 15 14 13 25 25 C 1.47405 * 125.67870 * 179.97438 * 9 7 5 26 26 C 1.53123 * 109.15585 * 302.34276 * 5 4 2 27 27 C 1.53030 * 109.28009 * 57.65675 * 26 5 4 28 28 N 1.46846 * 109.46295 * 240.02803 * 2 1 3 29 29 C 1.46909 * 111.00243 * 54.15000 * 28 2 1 30 30 H 1.09007 * 109.46952 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47191 * 299.97225 * 1 2 3 32 32 H 1.08992 * 109.47324 * 59.97657 * 1 2 3 33 33 H 1.09008 * 109.49869 * 299.12927 * 4 2 1 34 34 H 1.09002 * 109.50237 * 59.20775 * 4 2 1 35 35 H 1.09004 * 110.33247 * 275.01986 * 10 9 7 36 36 H 1.08990 * 110.33622 * 37.25508 * 10 9 7 37 37 H 1.09001 * 111.25183 * 277.75672 * 11 10 9 38 38 H 1.09002 * 110.94941 * 153.76189 * 11 10 9 39 39 H 1.09003 * 111.03342 * 30.77360 * 13 12 11 40 40 H 1.09002 * 111.03550 * 154.70416 * 13 12 11 41 41 H 1.08996 * 110.33374 * 205.61771 * 14 13 12 42 42 H 1.09008 * 110.33253 * 83.38839 * 14 13 12 43 43 H 0.96994 * 119.99492 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.98619 * 238.54142 * 24 15 14 45 45 H 1.09000 * 110.01578 * 117.24787 * 24 15 14 46 46 H 1.09002 * 109.98271 * 301.45680 * 25 9 7 47 47 H 1.08996 * 109.98588 * 62.75954 * 25 9 7 48 48 H 1.09003 * 109.49962 * 177.59579 * 26 5 4 49 49 H 1.08997 * 109.50390 * 297.67422 * 26 5 4 50 50 H 1.08999 * 109.46586 * 180.80053 * 27 26 5 51 51 H 1.08998 * 109.46592 * 60.83401 * 27 26 5 52 52 H 1.09002 * 109.46518 * 59.99906 * 29 28 2 53 53 H 1.08995 * 109.47039 * 180.02562 * 29 28 2 54 54 H 1.09001 * 109.47064 * 300.00633 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 1.2499 5 6 3.5708 -0.7363 1.2357 6 1 3.9456 0.2866 1.2685 7 6 4.0780 -1.4973 2.4334 8 8 3.2932 -1.9800 3.2221 9 7 5.4038 -1.6405 2.6289 10 6 6.4652 -1.1121 1.7504 11 6 7.7143 -0.9833 2.6665 12 6 7.5457 -2.2075 3.5798 13 6 8.2599 -2.0065 4.9253 14 6 9.6901 -2.5082 4.5919 15 7 9.4927 -3.6280 3.6514 16 6 10.3727 -4.6549 3.4365 17 1 10.1340 -5.4303 2.7236 18 6 11.5717 -4.6991 4.1347 19 7 11.8629 -3.7538 5.0030 20 14 12.7724 -6.0996 3.8409 21 1 12.2136 -7.0256 2.8233 22 1 14.0639 -5.5508 3.3553 23 1 12.9939 -6.8362 5.1112 24 6 8.1903 -3.4578 2.9824 25 6 6.0347 -2.3561 3.7526 26 6 4.0546 -1.4191 -0.0467 27 6 3.4865 -0.6779 -1.2590 28 7 2.0193 -0.6917 -1.1994 29 6 1.4374 -0.1104 -2.4167 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8902 32 1 -0.3633 0.5142 -0.8897 33 1 1.6894 -0.1982 2.1399 34 1 1.6650 -1.7446 1.2578 35 1 6.6613 -1.8065 0.9334 36 1 6.1813 -0.1355 1.3586 37 1 7.6879 -0.0586 3.2430 38 1 8.6333 -1.0530 2.0845 39 1 8.2706 -0.9542 5.2091 40 1 7.8035 -2.6159 5.7053 41 1 10.1897 -2.8563 5.4959 42 1 10.2694 -1.7147 4.1198 43 1 12.7008 -3.7846 5.4905 44 1 7.5596 -4.3271 3.1682 45 1 8.3360 -3.3257 1.9103 46 1 5.7225 -1.9135 4.6985 47 1 5.7586 -3.4102 3.7251 48 1 5.1438 -1.3951 -0.0831 49 1 3.7128 -2.4540 -0.0592 50 1 3.8175 -1.1700 -2.1735 51 1 3.8405 0.3530 -1.2531 52 1 1.7122 0.9423 -2.4837 53 1 1.8162 -0.6415 -3.2898 54 1 0.3518 -0.2008 -2.3794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041602396.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:09 Heat of formation + Delta-G solvation = -23.054734 kcal Electronic energy + Delta-G solvation = -30505.389662 eV Core-core repulsion = 26669.602388 eV Total energy + Delta-G solvation = -3835.787273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.78859 -40.47635 -39.25976 -37.20213 -34.98015 -34.29251 -33.32577 -31.98965 -30.77079 -29.94431 -28.63360 -27.73052 -27.05970 -25.49638 -24.12129 -23.82905 -22.71116 -22.19620 -20.77364 -20.33307 -19.97440 -18.84778 -17.86125 -17.03455 -16.84357 -16.74172 -16.48660 -16.35246 -15.92437 -15.64103 -15.48465 -15.18642 -14.89606 -14.64203 -14.12729 -14.10770 -13.84352 -13.70496 -13.63626 -13.51644 -13.12462 -13.08671 -13.00032 -12.94732 -12.82757 -12.72301 -12.58513 -12.56277 -12.39718 -12.13216 -11.98725 -11.85406 -11.76983 -11.60732 -11.52519 -11.47576 -11.32332 -11.17093 -10.74620 -10.69768 -9.69202 -9.20657 -8.86974 -7.76926 -5.20306 1.46826 1.47624 1.57741 1.58521 1.94118 2.49601 2.97384 3.27556 3.36230 3.54253 3.61067 3.63794 3.70039 3.82530 3.86882 4.06460 4.13221 4.23131 4.25863 4.31891 4.34788 4.40856 4.51262 4.56318 4.60042 4.61497 4.64538 4.70314 4.73979 4.76654 4.82349 4.85590 4.89709 4.92316 4.95180 4.98038 5.04242 5.06310 5.09013 5.12180 5.18868 5.23373 5.27235 5.32227 5.35416 5.43167 5.47896 5.66562 5.84025 6.19821 6.20491 6.32202 6.52173 7.11372 7.12220 7.78952 8.43036 9.25071 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.024758 B = 0.002344 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.667641 B =11943.492628 C =12461.592331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.086 3.914 3 H 0.050 0.950 4 C -0.087 4.087 5 C -0.094 4.094 6 H 0.116 0.884 7 C 0.528 3.472 8 O -0.588 6.588 9 N -0.614 5.614 10 C 0.103 3.897 11 C -0.109 4.109 12 C -0.071 4.071 13 C -0.118 4.118 14 C 0.159 3.841 15 N -0.625 5.625 16 C -0.235 4.235 17 H 0.078 0.922 18 C -0.067 4.067 19 N -0.948 5.948 20 Si 0.977 3.023 21 H -0.268 1.268 22 H -0.291 1.291 23 H -0.293 1.293 24 C 0.151 3.849 25 C 0.131 3.869 26 C -0.110 4.110 27 C 0.061 3.939 28 N -0.557 5.557 29 C 0.023 3.977 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.067 0.933 42 H -0.004 1.004 43 H 0.247 0.753 44 H 0.014 0.986 45 H 0.032 0.968 46 H 0.068 0.932 47 H 0.051 0.949 48 H 0.092 0.908 49 H 0.055 0.945 50 H 0.088 0.912 51 H 0.049 0.951 52 H 0.031 0.969 53 H 0.072 0.928 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.487 13.575 -13.974 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 H 0.068 0.932 4 C -0.125 4.125 5 C -0.115 4.115 6 H 0.134 0.866 7 C 0.318 3.682 8 O -0.469 6.469 9 N -0.346 5.346 10 C -0.019 4.019 11 C -0.147 4.147 12 C -0.072 4.072 13 C -0.156 4.156 14 C 0.034 3.966 15 N -0.352 5.352 16 C -0.365 4.365 17 H 0.096 0.904 18 C -0.259 4.259 19 N -0.598 5.598 20 Si 0.806 3.194 21 H -0.193 1.193 22 H -0.218 1.218 23 H -0.220 1.220 24 C 0.026 3.974 25 C 0.008 3.992 26 C -0.148 4.148 27 C -0.066 4.066 28 N -0.283 5.283 29 C -0.125 4.125 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.014 0.986 43 H 0.056 0.944 44 H 0.032 0.968 45 H 0.050 0.950 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.110 0.890 49 H 0.074 0.926 50 H 0.106 0.894 51 H 0.067 0.933 52 H 0.049 0.951 53 H 0.091 0.909 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.951 12.762 -13.511 27.266 hybrid contribution 1.283 -0.402 0.381 1.398 sum -18.668 12.360 -13.129 25.954 Atomic orbital electron populations 1.21890 0.93421 1.02357 1.02629 1.21596 0.96163 0.95182 0.89274 0.93227 1.21394 0.92482 1.01280 0.97362 1.21353 0.97557 1.00545 0.92053 0.86624 1.20940 0.80096 0.79944 0.87197 1.90673 1.55822 1.51542 1.48818 1.48758 1.05382 1.54239 1.26264 1.22749 0.85662 1.00622 0.92833 1.22681 0.98009 0.96850 0.97177 1.21369 0.92574 0.96171 0.97081 1.22726 0.96302 1.01371 0.95242 1.21721 0.92615 0.87768 0.94457 1.44916 1.17570 1.25971 1.46703 1.19451 0.97259 1.01016 1.18728 0.90431 1.25591 0.99811 1.01104 0.99425 1.70057 1.24255 1.35201 1.30243 0.85018 0.78599 0.78614 0.77152 1.19296 1.21767 1.22030 1.21257 0.86393 0.94490 0.95286 1.21635 0.91017 0.96351 0.90227 1.21707 1.01599 0.99471 0.91998 1.22068 0.86835 0.99458 0.98262 1.61932 1.07712 1.55880 1.02780 1.22444 1.00960 0.97474 0.91621 0.92735 0.91565 0.91085 0.91461 0.92740 0.90138 0.87209 0.88967 0.89947 0.89207 0.92428 0.91476 0.98556 0.94364 0.96762 0.95011 0.91374 0.93070 0.88959 0.92583 0.89401 0.93329 0.95062 0.90903 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.76 71.98 0.63 -1.24 16 2 C 0.09 1.27 2.44 44.94 0.11 1.38 16 3 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 4 C -0.09 -1.70 3.96 30.65 0.12 -1.58 16 5 C -0.09 -1.74 1.94 -11.46 -0.02 -1.77 16 6 H 0.12 1.62 7.85 -2.39 -0.02 1.60 16 7 C 0.53 14.22 7.22 87.65 0.63 14.85 16 8 O -0.59 -21.01 16.31 -3.03 -0.05 -21.06 16 9 N -0.61 -15.62 3.34 -812.36 -2.71 -18.33 16 10 C 0.10 1.98 5.12 87.01 0.45 2.43 16 11 C -0.11 -2.66 5.87 31.65 0.19 -2.47 16 12 C -0.07 -2.25 0.61 -51.87 -0.03 -2.28 16 13 C -0.12 -4.22 5.93 31.56 0.19 -4.03 16 14 C 0.16 7.62 5.83 86.93 0.51 8.12 16 15 N -0.63 -31.70 3.41 -693.02 -2.36 -34.07 16 16 C -0.24 -13.15 10.28 84.04 0.86 -12.29 16 17 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 18 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 19 N -0.95 -56.04 10.10 21.65 0.22 -55.82 16 20 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 24 C 0.15 6.06 6.39 86.15 0.55 6.61 16 25 C 0.13 3.96 6.13 86.14 0.53 4.49 16 26 C -0.11 -1.76 5.16 30.65 0.16 -1.60 16 27 C 0.06 0.79 5.46 86.32 0.47 1.26 16 28 N -0.56 -8.22 4.75 -897.17 -4.26 -12.48 16 29 C 0.02 0.24 9.05 127.69 1.16 1.40 16 30 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.71 6.33 -2.39 -0.02 0.70 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.05 1.35 8.04 -2.39 -0.02 1.33 16 35 H 0.08 1.49 7.12 -2.38 -0.02 1.47 16 36 H 0.11 1.38 7.35 -2.39 -0.02 1.36 16 37 H 0.09 1.97 7.82 -2.39 -0.02 1.95 16 38 H 0.08 2.19 7.94 -2.39 -0.02 2.17 16 39 H 0.09 2.71 7.78 -2.39 -0.02 2.69 16 40 H 0.06 2.12 8.09 -2.39 -0.02 2.10 16 41 H 0.07 3.74 5.89 -2.39 -0.01 3.73 16 42 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 43 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 44 H 0.01 0.61 7.44 -2.39 -0.02 0.59 16 45 H 0.03 1.23 7.78 -2.39 -0.02 1.21 16 46 H 0.07 2.09 7.86 -2.39 -0.02 2.07 16 47 H 0.05 1.74 7.41 -2.39 -0.02 1.72 16 48 H 0.09 1.25 5.10 -2.39 -0.01 1.24 16 49 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 51 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 52 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 53 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 54 H 0.08 0.75 6.21 -2.39 -0.01 0.73 16 Total: -1.00 -70.63 397.88 0.68 -69.95 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.86 Total: 14.18 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.96 Total: 9.97 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -9.11 Total: -120.70 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.05 Total: -21.06 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -70.63 0.68 -69.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041602396.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.891 kcal (2) G-P(sol) polarization free energy of solvation -70.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds