Wall clock time and date at job start Tue Mar 31 2020 18:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46156 * 2 1 4 4 C 1.34777 * 119.99442 * 60.02769 * 3 2 1 5 5 O 1.21274 * 120.00482 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99646 * 179.97438 * 4 3 2 7 7 H 1.08995 * 110.30474 * 302.16413 * 6 4 3 8 8 C 1.55325 * 110.33306 * 180.02562 * 6 4 3 9 9 C 1.53936 * 102.08423 * 218.92915 * 8 6 4 10 10 H 1.08996 * 111.00634 * 280.63209 * 9 8 6 11 11 C 1.52371 * 113.25484 * 155.06215 * 9 8 6 12 12 C 1.53642 * 107.60012 * 185.08836 * 11 9 8 13 13 C 1.52822 * 110.61191 * 56.41253 * 12 11 9 14 14 C 1.53638 * 110.64088 * 306.12952 * 13 12 11 15 15 N 1.45521 * 107.85908 * 57.13503 * 14 13 12 16 16 C 1.46327 * 117.23145 * 174.42296 * 15 14 13 17 17 C 1.53042 * 109.45925 * 240.03231 * 2 1 3 18 18 C 1.53186 * 109.31373 * 178.61194 * 17 2 1 19 19 N 1.46927 * 108.77635 * 54.63245 * 18 17 2 20 20 C 1.36935 * 120.63069 * 126.36583 * 19 18 17 21 21 H 1.08008 * 120.00371 * 332.50732 * 20 19 18 22 22 C 1.38820 * 120.00118 * 152.50161 * 20 19 18 23 23 N 1.31611 * 119.99675 * 335.03717 * 22 20 19 24 24 Si 1.86796 * 119.99833 * 155.02782 * 22 20 19 25 25 H 1.48499 * 109.47019 * 60.00618 * 24 22 20 26 26 H 1.48507 * 109.47042 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47640 * 300.00558 * 24 22 20 28 28 C 1.46926 * 118.74010 * 306.64588 * 19 18 17 29 29 C 1.52760 * 109.00852 * 53.30661 * 28 19 18 30 30 H 1.08999 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46728 * 299.96809 * 1 2 3 32 32 H 1.08999 * 109.47306 * 59.96786 * 1 2 3 33 33 H 0.96995 * 120.00343 * 240.03723 * 3 2 1 34 34 H 1.08993 * 110.91245 * 337.12492 * 8 6 4 35 35 H 1.08999 * 110.90554 * 100.73981 * 8 6 4 36 36 H 1.09001 * 109.83534 * 304.61531 * 11 9 8 37 37 H 1.09004 * 109.83231 * 65.50261 * 11 9 8 38 38 H 1.09002 * 109.24465 * 176.70581 * 12 11 9 39 39 H 1.09000 * 109.24646 * 296.11914 * 12 11 9 40 40 H 1.09000 * 109.24189 * 66.43338 * 13 12 11 41 41 H 1.09001 * 109.24054 * 185.83031 * 13 12 11 42 42 H 1.09000 * 109.78332 * 176.72700 * 14 13 12 43 43 H 1.09006 * 109.78003 * 297.48921 * 14 13 12 44 44 H 1.09005 * 110.15249 * 32.83623 * 16 15 14 45 45 H 1.08996 * 110.15916 * 271.08369 * 16 15 14 46 46 H 1.09002 * 109.49954 * 58.65561 * 17 2 1 47 47 H 1.09003 * 109.52155 * 298.57959 * 17 2 1 48 48 H 1.09000 * 109.58802 * 294.84668 * 18 17 2 49 49 H 1.09000 * 109.58757 * 174.41795 * 18 17 2 50 50 H 0.96995 * 120.00523 * 354.24975 * 23 22 20 51 51 H 1.08999 * 109.58901 * 173.14439 * 28 19 18 52 52 H 1.09000 * 109.58171 * 293.56791 * 28 19 18 53 53 H 1.08997 * 109.56435 * 185.55817 * 29 28 19 54 54 H 1.09003 * 109.38633 * 65.51303 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2109 1.0112 5 8 0.9964 1.8138 1.9212 6 6 2.1953 3.6317 1.0115 7 1 3.2845 3.6476 0.9727 8 6 1.6895 4.3828 2.2735 9 6 1.3698 5.7795 1.7107 10 1 2.2775 6.3719 1.5966 11 6 0.3269 6.5328 2.5271 12 6 0.0139 7.8420 1.7864 13 6 -0.4473 7.5549 0.3580 14 6 0.5781 6.6773 -0.3761 15 7 0.7550 5.4567 0.3963 16 6 1.6001 4.4131 -0.1850 17 6 2.0398 -0.7208 -1.2501 18 6 3.5713 -0.6886 -1.2643 19 7 4.0679 -1.2487 0.0000 20 6 4.9757 -2.2739 0.0000 21 1 5.0103 -2.9647 -0.8296 22 6 5.8517 -2.4253 1.0662 23 7 6.1717 -1.3860 1.8076 24 14 6.5759 -4.1041 1.4488 25 1 7.3497 -4.5880 0.2774 26 1 7.4742 -3.9989 2.6267 27 1 5.4794 -5.0601 1.7468 28 6 3.5672 -0.6922 1.2642 29 6 2.0399 -0.7206 1.2501 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3634 0.5143 -0.8897 33 1 2.5753 1.6989 -0.7277 34 1 0.7928 3.9103 2.6741 35 1 2.4703 4.4385 3.0320 36 1 -0.5785 5.9321 2.6151 37 1 0.7221 6.7532 3.5188 38 1 -0.7738 8.3760 2.3179 39 1 0.9104 8.4613 1.7570 40 1 -1.4067 7.0386 0.3872 41 1 -0.5632 8.4969 -0.1781 42 1 0.2088 6.4333 -1.3722 43 1 1.5279 7.2064 -0.4542 44 1 2.3991 4.8622 -0.7750 45 1 1.0013 3.7481 -0.8073 46 1 1.6571 -0.2209 -2.1399 47 1 1.6978 -1.7557 -1.2388 48 1 3.9142 0.3409 -1.3675 49 1 3.9416 -1.2846 -2.0984 50 1 5.8630 -0.5003 1.5604 51 1 3.9348 -1.2905 2.0979 52 1 3.9098 0.3370 1.3714 53 1 1.6573 -0.2205 2.1398 54 1 1.6974 -1.7554 1.2387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045438946.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:37 Heat of formation + Delta-G solvation = -39.783001 kcal Electronic energy + Delta-G solvation = -31321.007747 eV Core-core repulsion = 27484.495082 eV Total energy + Delta-G solvation = -3836.512665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.84478 -40.64685 -38.92522 -36.41129 -35.81529 -33.70381 -33.20469 -32.53813 -31.71516 -30.27610 -28.97269 -28.20728 -25.86676 -24.79200 -24.06413 -23.38655 -22.69342 -22.28509 -21.08326 -20.70740 -20.16854 -19.37086 -18.14964 -17.13357 -16.64741 -16.62651 -16.18052 -15.95011 -15.73501 -15.54726 -15.36108 -15.24658 -15.00671 -14.78678 -14.73073 -14.30699 -14.14981 -13.85520 -13.50537 -13.43889 -13.38968 -13.26382 -13.02624 -12.75996 -12.69283 -12.51642 -12.49260 -12.38366 -12.10131 -12.02178 -11.92308 -11.85056 -11.83147 -11.54933 -11.41742 -11.29278 -11.22232 -11.20223 -10.47889 -10.43882 -9.98158 -9.27845 -8.91345 -8.24431 -5.39005 1.56227 1.64273 1.71045 1.82349 2.23632 2.65028 2.93584 3.21504 3.41003 3.51215 3.56611 3.71822 3.85988 3.96433 3.98741 4.05117 4.06480 4.07291 4.25910 4.33715 4.35098 4.44625 4.50491 4.51216 4.52844 4.58915 4.61437 4.74914 4.78845 4.79999 4.82221 4.83511 4.90373 4.94580 4.98798 5.02297 5.03474 5.09924 5.10835 5.18280 5.19820 5.22574 5.25601 5.30986 5.33558 5.41795 5.50459 5.70366 5.84290 5.98697 6.30261 6.38993 6.66375 7.06563 7.35063 7.78316 8.23971 9.00539 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.020735 B = 0.002829 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.070311 B = 9894.197641 C =10364.845340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.188 3.812 3 N -0.707 5.707 4 C 0.524 3.476 5 O -0.568 6.568 6 C -0.119 4.119 7 H 0.106 0.894 8 C -0.100 4.100 9 C 0.072 3.928 10 H 0.062 0.938 11 C -0.105 4.105 12 C -0.117 4.117 13 C -0.112 4.112 14 C 0.059 3.941 15 N -0.547 5.547 16 C 0.071 3.929 17 C -0.123 4.123 18 C 0.144 3.856 19 N -0.614 5.614 20 C -0.353 4.353 21 H 0.053 0.947 22 C -0.078 4.078 23 N -0.943 5.943 24 Si 1.111 2.889 25 H -0.272 1.272 26 H -0.294 1.294 27 H -0.283 1.283 28 C 0.175 3.825 29 C -0.134 4.134 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.405 0.595 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.038 0.962 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.070 0.930 48 H 0.025 0.975 49 H 0.055 0.945 50 H 0.253 0.747 51 H 0.030 0.970 52 H 0.000 1.000 53 H 0.061 0.939 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.952 18.323 -6.432 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.103 3.897 3 N -0.358 5.358 4 C 0.312 3.688 5 O -0.447 6.447 6 C -0.140 4.140 7 H 0.124 0.876 8 C -0.139 4.139 9 C -0.036 4.036 10 H 0.080 0.920 11 C -0.143 4.143 12 C -0.155 4.155 13 C -0.150 4.150 14 C -0.069 4.069 15 N -0.273 5.273 16 C -0.058 4.058 17 C -0.162 4.162 18 C 0.018 3.982 19 N -0.339 5.339 20 C -0.483 4.483 21 H 0.071 0.929 22 C -0.274 4.274 23 N -0.585 5.585 24 Si 0.936 3.064 25 H -0.198 1.198 26 H -0.220 1.220 27 H -0.209 1.209 28 C 0.049 3.951 29 C -0.174 4.174 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.241 0.759 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.056 0.944 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.116 0.884 47 H 0.088 0.912 48 H 0.043 0.957 49 H 0.074 0.926 50 H 0.063 0.937 51 H 0.048 0.952 52 H 0.018 0.982 53 H 0.080 0.920 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.973 16.989 -4.770 21.902 hybrid contribution 0.471 0.944 -1.221 1.614 sum -12.501 17.933 -5.991 22.667 Atomic orbital electron populations 1.22079 0.93515 1.02411 1.02598 1.20128 0.93903 0.80744 0.94970 1.46040 1.53182 1.11354 1.25264 1.20670 0.79258 0.87807 0.81104 1.90592 1.39546 1.77634 1.36912 1.22467 1.01854 0.91200 0.98509 0.87551 1.22305 1.01803 0.94409 0.95340 1.22563 0.96166 0.94796 0.90057 0.91996 1.21510 0.98239 0.96327 0.98219 1.21562 1.01664 0.96559 0.95673 1.21582 0.98470 0.99248 0.95674 1.22033 0.98635 0.89108 0.97141 1.62762 1.48835 1.10845 1.04847 1.22352 0.95517 0.93507 0.94378 1.22186 0.96533 1.00883 0.96605 1.21050 0.92854 0.96163 0.88085 1.44312 1.48289 1.40455 1.00872 1.20221 1.12927 1.05671 1.09489 0.92894 1.27135 0.96183 1.06786 0.97327 1.70892 1.44415 0.99259 1.43947 0.82901 0.75659 0.71590 0.76224 1.19784 1.22045 1.20946 1.20429 0.91647 0.94292 0.88726 1.22208 0.96740 0.99495 0.98937 0.91561 0.92602 0.91145 0.75850 0.90921 0.90633 0.92256 0.90788 0.90964 0.91763 0.92204 0.90009 0.90313 0.94357 0.91867 0.90327 0.88448 0.91177 0.95732 0.92645 0.93718 0.95153 0.98224 0.92047 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 8.40 71.98 0.60 -3.65 16 2 C 0.19 6.07 0.66 3.63 0.00 6.08 16 3 N -0.71 -20.66 4.04 -422.79 -1.71 -22.37 16 4 C 0.52 16.33 6.36 87.66 0.56 16.89 16 5 O -0.57 -21.69 11.66 -3.01 -0.04 -21.73 16 6 C -0.12 -2.89 3.42 -10.12 -0.03 -2.92 16 7 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 8 C -0.10 -2.44 5.95 31.71 0.19 -2.25 16 9 C 0.07 1.39 2.62 44.68 0.12 1.51 16 10 H 0.06 1.11 8.08 -2.39 -0.02 1.09 16 11 C -0.11 -1.80 5.67 30.60 0.17 -1.63 16 12 C -0.12 -1.56 5.94 30.75 0.18 -1.38 16 13 C -0.11 -1.49 6.06 30.75 0.19 -1.31 16 14 C 0.06 0.89 5.85 86.78 0.51 1.40 16 15 N -0.55 -10.78 4.65 -865.95 -4.02 -14.80 16 16 C 0.07 1.39 6.48 87.03 0.56 1.96 16 17 C -0.12 -3.73 4.96 30.67 0.15 -3.58 16 18 C 0.14 5.49 6.24 86.36 0.54 6.03 16 19 N -0.61 -30.42 2.86 -699.92 -2.00 -32.42 16 20 C -0.35 -19.76 9.49 84.04 0.80 -18.96 16 21 H 0.05 2.93 7.94 -2.91 -0.02 2.91 16 22 C -0.08 -4.50 4.69 84.87 0.40 -4.10 16 23 N -0.94 -58.56 12.41 21.65 0.27 -58.29 16 24 Si 1.11 51.79 29.99 68.60 2.06 53.84 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 28 C 0.17 8.63 4.41 86.22 0.38 9.01 16 29 C -0.13 -5.53 4.65 30.53 0.14 -5.39 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.86 6.17 -2.39 -0.01 1.84 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.41 10.21 7.27 -92.71 -0.67 9.53 16 34 H 0.07 2.15 6.88 -2.39 -0.02 2.13 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.04 0.54 8.06 -2.38 -0.02 0.53 16 44 H 0.06 1.03 8.04 -2.38 -0.02 1.02 16 45 H 0.08 1.60 7.68 -2.39 -0.02 1.59 16 46 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.02 0.89 6.94 -2.39 -0.02 0.87 16 49 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 50 H 0.25 15.99 6.71 -92.71 -0.62 15.37 16 51 H 0.03 1.74 6.30 -2.39 -0.02 1.73 16 52 H 0.00 -0.01 7.46 -2.39 -0.02 -0.03 16 53 H 0.06 2.69 6.20 -2.39 -0.01 2.67 16 54 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -70.20 394.43 0.36 -69.84 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.34 Total: 28.21 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 5.46 Total: -2.28 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -7.46 Total: -127.89 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.04 Total: -21.73 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 2.06 Total: 53.84 kcal Total: -70.20 0.36 -69.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045438946.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.060 kcal (2) G-P(sol) polarization free energy of solvation -70.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds