Wall clock time and date at job start Tue Mar 31 2020 18:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46496 * 109.45923 * 2 1 4 4 C 1.34775 * 120.00520 * 60.02282 * 3 2 1 5 5 O 1.21290 * 119.99872 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00495 * 179.97438 * 4 3 2 7 7 H 1.09003 * 110.30819 * 302.19159 * 6 4 3 8 8 C 1.54986 * 110.34819 * 180.02562 * 6 4 3 9 9 C 1.53259 * 104.18651 * 243.62737 * 8 6 4 10 10 H 1.09002 * 110.28765 * 90.96709 * 9 8 6 11 11 C 1.52243 * 113.91780 * 215.56366 * 9 8 6 12 12 C 1.53658 * 107.57451 * 177.27081 * 11 9 8 13 13 C 1.52818 * 110.60807 * 303.87809 * 12 11 9 14 14 C 1.53620 * 110.70694 * 53.74086 * 13 12 11 15 15 N 1.45671 * 107.85599 * 302.60240 * 14 13 12 16 16 C 1.46981 * 116.60109 * 182.62558 * 15 14 13 17 17 C 1.53043 * 109.44633 * 119.95954 * 2 1 3 18 18 C 1.53193 * 109.30918 * 181.37825 * 17 2 1 19 19 N 1.46924 * 108.77946 * 305.36605 * 18 17 2 20 20 C 1.36930 * 120.63343 * 233.59039 * 19 18 17 21 21 H 1.08003 * 120.00322 * 152.30666 * 20 19 18 22 22 C 1.38820 * 120.00062 * 332.30626 * 20 19 18 23 23 N 1.31617 * 119.99722 * 342.59943 * 22 20 19 24 24 Si 1.86792 * 120.00224 * 162.60073 * 22 20 19 25 25 H 1.48506 * 109.47074 * 94.34606 * 24 22 20 26 26 H 1.48492 * 109.47247 * 214.34638 * 24 22 20 27 27 H 1.48500 * 109.47128 * 334.35158 * 24 22 20 28 28 C 1.46922 * 118.73512 * 53.60745 * 19 18 17 29 29 C 1.53035 * 109.45996 * 240.02262 * 2 1 3 30 30 H 1.08997 * 109.47060 * 60.00358 * 1 2 3 31 31 H 1.08997 * 109.46625 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47117 * 300.00169 * 1 2 3 33 33 H 0.97000 * 119.99923 * 240.02950 * 3 2 1 34 34 H 1.09001 * 110.48581 * 124.96059 * 8 6 4 35 35 H 1.09001 * 110.60609 * 2.36203 * 8 6 4 36 36 H 1.09006 * 109.83492 * 57.75159 * 11 9 8 37 37 H 1.09002 * 109.83591 * 296.79388 * 11 9 8 38 38 H 1.09004 * 109.25104 * 183.58452 * 12 11 9 39 39 H 1.09002 * 109.25050 * 64.16814 * 12 11 9 40 40 H 1.09010 * 109.22609 * 293.43047 * 13 12 11 41 41 H 1.08998 * 109.19962 * 174.04109 * 13 12 11 42 42 H 1.09006 * 109.79367 * 62.20794 * 14 13 12 43 43 H 1.09003 * 109.79295 * 182.99526 * 14 13 12 44 44 H 1.09000 * 110.58641 * 79.11589 * 16 15 14 45 45 H 1.09006 * 110.74603 * 316.22253 * 16 15 14 46 46 H 1.08999 * 109.50186 * 301.33047 * 17 2 1 47 47 H 1.09001 * 109.49501 * 61.43294 * 17 2 1 48 48 H 1.09001 * 109.58376 * 185.57927 * 18 17 2 49 49 H 1.09001 * 109.58915 * 65.16100 * 18 17 2 50 50 H 0.96996 * 120.00131 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.58953 * 186.60481 * 28 19 18 52 52 H 1.09007 * 109.70517 * 66.25057 * 28 19 18 53 53 H 1.08994 * 109.49951 * 298.57646 * 29 2 1 54 54 H 1.08998 * 109.49675 * 58.68097 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2110 1.0110 5 8 0.9963 1.8140 1.9211 6 6 2.1953 3.6318 1.0113 7 1 3.2845 3.6478 0.9721 8 6 1.6907 4.3817 2.2703 9 6 0.7956 5.4933 1.7118 10 1 -0.2356 5.1476 1.6391 11 6 0.8612 6.7936 2.5010 12 6 -0.0292 7.8185 1.7814 13 6 0.4058 7.9805 0.3254 14 6 0.4522 6.6178 -0.3824 15 7 1.3632 5.7587 0.3619 16 6 1.5978 4.4157 -0.1874 17 6 2.0396 -0.7207 1.2503 18 6 3.5711 -0.6888 1.2646 19 7 4.0677 -1.2493 0.0005 20 6 4.9760 -2.2740 0.0007 21 1 5.0090 -2.9666 -0.8273 22 6 5.8545 -2.4226 1.0652 23 7 6.0611 -1.4202 1.8928 24 14 6.7434 -4.0451 1.3232 25 1 8.0773 -3.9876 0.6730 26 1 6.9120 -4.2913 2.7778 27 1 5.9477 -5.1462 0.7236 28 6 3.5715 -0.6891 -1.2638 29 6 2.0399 -0.7210 -1.2499 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.5754 1.6988 -0.7277 34 1 2.5287 4.8078 2.8220 35 1 1.1145 3.7130 2.9098 36 1 1.8891 7.1549 2.5338 37 1 0.4932 6.6304 3.5140 38 1 0.0478 8.7803 2.2886 39 1 -1.0645 7.4790 1.8115 40 1 1.3963 8.4347 0.2950 41 1 -0.3025 8.6290 -0.1903 42 1 -0.5439 6.1752 -0.3967 43 1 0.8145 6.7440 -1.4027 44 1 2.3098 4.4578 -1.0117 45 1 0.6614 3.9629 -0.5136 46 1 1.6570 -0.2205 2.1399 47 1 1.6974 -1.7555 1.2385 48 1 3.9412 -1.2847 2.0989 49 1 3.9143 0.3406 1.3677 50 1 6.6747 -1.5241 2.6368 51 1 3.9417 -1.2851 -2.0979 52 1 3.9146 0.3402 -1.3696 53 1 1.6977 -1.7557 -1.2380 54 1 1.6575 -0.2209 -2.1397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045438948.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:45 Heat of formation + Delta-G solvation = -36.812739 kcal Electronic energy + Delta-G solvation = -31252.546053 eV Core-core repulsion = 27416.162188 eV Total energy + Delta-G solvation = -3836.383865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.81014 -40.59483 -38.79991 -36.17062 -35.76183 -33.65240 -33.18871 -32.51993 -31.59722 -30.25893 -29.08036 -28.17524 -25.94772 -24.75997 -23.92990 -23.33305 -22.69865 -22.29383 -21.02948 -20.61281 -20.12094 -18.76947 -18.26922 -16.89265 -16.81397 -16.47193 -16.14791 -16.00318 -15.70695 -15.56172 -15.23520 -15.19171 -14.86129 -14.73181 -14.64097 -14.32240 -14.06013 -13.90919 -13.52998 -13.29313 -13.27554 -13.21896 -13.00103 -12.83141 -12.62675 -12.55847 -12.49947 -12.26181 -12.24902 -12.15862 -11.96574 -11.75267 -11.67625 -11.53246 -11.34596 -11.29583 -11.27052 -11.18338 -10.52642 -10.42462 -9.92491 -9.42494 -8.65884 -7.86584 -5.31048 1.44486 1.47045 1.56252 1.71926 2.27664 2.51094 2.99588 3.28437 3.45956 3.61798 3.69616 3.77650 3.93836 3.96609 4.03892 4.07723 4.12535 4.14531 4.26059 4.30029 4.46435 4.49442 4.55164 4.57637 4.67603 4.69724 4.71041 4.80092 4.82978 4.84972 4.86934 4.93307 4.96016 5.03005 5.04886 5.07686 5.10863 5.14153 5.14625 5.23405 5.27111 5.32583 5.34532 5.37972 5.50002 5.50855 5.63857 5.70245 5.79869 5.90096 6.23374 6.39055 6.70745 7.15246 7.37807 7.88105 8.39248 9.19112 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.020050 B = 0.002817 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.183024 B = 9938.602343 C =10415.305407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.186 3.814 3 N -0.703 5.703 4 C 0.520 3.480 5 O -0.570 6.570 6 C -0.110 4.110 7 H 0.106 0.894 8 C -0.106 4.106 9 C 0.068 3.932 10 H 0.040 0.960 11 C -0.104 4.104 12 C -0.119 4.119 13 C -0.111 4.111 14 C 0.051 3.949 15 N -0.525 5.525 16 C 0.065 3.935 17 C -0.138 4.138 18 C 0.195 3.805 19 N -0.607 5.607 20 C -0.260 4.260 21 H 0.069 0.931 22 C -0.053 4.053 23 N -0.934 5.934 24 Si 0.963 3.037 25 H -0.284 1.284 26 H -0.297 1.297 27 H -0.269 1.269 28 C 0.140 3.860 29 C -0.123 4.123 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.406 0.594 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.029 0.971 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.041 0.959 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.039 0.961 49 H -0.006 1.006 50 H 0.247 0.753 51 H 0.058 0.942 52 H 0.023 0.977 53 H 0.071 0.929 54 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.718 17.644 -6.468 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.100 3.900 3 N -0.354 5.354 4 C 0.307 3.693 5 O -0.450 6.450 6 C -0.132 4.132 7 H 0.124 0.876 8 C -0.145 4.145 9 C -0.040 4.040 10 H 0.058 0.942 11 C -0.142 4.142 12 C -0.157 4.157 13 C -0.148 4.148 14 C -0.077 4.077 15 N -0.250 5.250 16 C -0.064 4.064 17 C -0.178 4.178 18 C 0.069 3.931 19 N -0.331 5.331 20 C -0.390 4.390 21 H 0.087 0.913 22 C -0.249 4.249 23 N -0.580 5.580 24 Si 0.792 3.208 25 H -0.211 1.211 26 H -0.223 1.223 27 H -0.194 1.194 28 C 0.015 3.985 29 C -0.162 4.162 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.242 0.758 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.103 0.897 44 H 0.121 0.879 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.012 0.988 50 H 0.056 0.944 51 H 0.077 0.923 52 H 0.041 0.959 53 H 0.090 0.910 54 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.638 17.637 -5.762 23.027 hybrid contribution 0.432 -1.427 0.314 1.523 sum -13.206 16.210 -5.449 21.607 Atomic orbital electron populations 1.22090 0.93747 1.02436 1.02384 1.20171 0.93712 0.80714 0.95363 1.46024 1.52889 1.11392 1.25097 1.20744 0.79350 0.88037 0.81168 1.90582 1.39944 1.77665 1.36822 1.22298 1.02460 0.90391 0.98077 0.87596 1.22134 0.99974 0.96298 0.96067 1.22388 0.95805 0.95319 0.90517 0.94244 1.21506 1.01117 0.93374 0.98184 1.21589 0.98808 0.99440 0.95840 1.21568 1.02383 0.95597 0.95276 1.22133 0.93632 0.93836 0.98121 1.63987 1.44877 1.12754 1.03359 1.22668 0.99893 0.88083 0.95725 1.22371 0.97810 0.99167 0.98488 1.20305 0.89487 0.94491 0.88850 1.44280 1.48148 1.39647 1.01018 1.19519 1.09622 1.03752 1.06097 0.91326 1.25781 0.98689 1.00261 1.00133 1.70198 1.38562 1.30830 1.18408 0.85324 0.78535 0.80506 0.76474 1.21102 1.22343 1.19413 1.21069 0.92700 0.96370 0.88349 1.22196 0.96783 1.00867 0.96374 0.91236 0.91507 0.92761 0.75760 0.90222 0.90974 0.91014 0.91126 0.90568 0.92533 0.91372 0.90116 0.95249 0.89675 0.87877 0.94106 0.92486 0.92944 0.94214 0.98802 0.94392 0.92301 0.95870 0.91027 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 8.40 71.98 0.60 -3.58 16 2 C 0.19 5.98 0.66 3.63 0.00 5.98 16 3 N -0.70 -20.77 4.08 -422.79 -1.72 -22.50 16 4 C 0.52 16.36 6.45 87.66 0.57 16.93 16 5 O -0.57 -21.73 11.49 -3.06 -0.04 -21.76 16 6 C -0.11 -2.81 3.48 -10.11 -0.04 -2.84 16 7 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 8 C -0.11 -2.69 6.22 31.36 0.19 -2.49 16 9 C 0.07 1.43 2.49 44.38 0.11 1.55 16 10 H 0.04 0.93 8.00 -2.39 -0.02 0.91 16 11 C -0.10 -1.80 5.64 30.57 0.17 -1.62 16 12 C -0.12 -1.65 5.95 30.76 0.18 -1.47 16 13 C -0.11 -1.46 6.06 30.74 0.19 -1.28 16 14 C 0.05 0.80 5.87 86.74 0.51 1.31 16 15 N -0.52 -10.33 4.84 -864.18 -4.19 -14.51 16 16 C 0.06 1.31 6.21 87.04 0.54 1.85 16 17 C -0.14 -5.73 4.67 30.67 0.14 -5.59 16 18 C 0.19 9.74 5.05 86.36 0.44 10.17 16 19 N -0.61 -29.91 2.99 -699.09 -2.09 -32.01 16 20 C -0.26 -14.20 9.58 84.04 0.81 -13.39 16 21 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 22 C -0.05 -3.02 4.91 84.86 0.42 -2.60 16 23 N -0.93 -56.35 11.19 21.65 0.24 -56.11 16 24 Si 0.96 45.48 29.59 68.60 2.03 47.51 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 28 C 0.14 5.29 6.24 86.36 0.54 5.83 16 29 C -0.12 -3.66 4.96 30.67 0.15 -3.51 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.77 6.17 -2.39 -0.01 1.75 16 33 H 0.41 10.40 7.27 -92.71 -0.67 9.73 16 34 H 0.08 1.92 8.00 -2.39 -0.02 1.90 16 35 H 0.07 2.16 6.51 -2.39 -0.02 2.14 16 36 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.03 0.49 8.00 -2.38 -0.02 0.47 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.04 0.86 7.88 -2.38 -0.02 0.84 16 46 H 0.06 2.52 6.20 -2.39 -0.01 2.50 16 47 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.04 2.32 6.04 -2.39 -0.01 2.31 16 49 H -0.01 -0.33 7.74 -2.39 -0.02 -0.34 16 50 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 51 H 0.06 2.16 7.93 -2.39 -0.02 2.15 16 52 H 0.02 0.84 6.94 -2.38 -0.02 0.83 16 53 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 54 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -67.71 395.20 -0.05 -67.76 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.19 Total: 26.39 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.53 Total: 5.23 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -7.76 Total: -125.13 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.04 Total: -21.76 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -67.71 -0.05 -67.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045438948.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.942 kcal (2) G-P(sol) polarization free energy of solvation -67.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds