Wall clock time and date at job start Tue Mar 31 2020 18:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.44841 * 2 1 4 4 C 1.34776 * 120.00273 * 60.03238 * 3 2 1 5 5 O 1.21284 * 119.99835 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00230 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.78700 * 65.77264 * 6 4 3 8 8 C 1.53622 * 109.79699 * 304.91303 * 6 4 3 9 9 C 1.52812 * 110.70178 * 297.80228 * 8 6 4 10 10 C 1.53659 * 110.61535 * 306.24972 * 9 8 6 11 11 C 1.52257 * 107.57296 * 56.12362 * 10 9 8 12 12 H 1.09000 * 110.78535 * 57.73242 * 11 10 9 13 13 C 1.53258 * 113.90261 * 182.76035 * 11 10 9 14 14 C 1.54984 * 104.19020 * 144.40780 * 13 11 10 15 15 C 1.55192 * 104.93034 * 357.51357 * 14 13 11 16 16 N 1.45669 * 109.79351 * 186.56760 * 6 4 3 17 17 C 1.53046 * 109.45855 * 240.03451 * 2 1 3 18 18 C 1.53201 * 109.30910 * 178.61330 * 17 2 1 19 19 N 1.46921 * 108.77232 * 54.63459 * 18 17 2 20 20 C 1.36942 * 120.62656 * 126.36787 * 19 18 17 21 21 H 1.07998 * 120.00108 * 328.91182 * 20 19 18 22 22 C 1.38818 * 119.99653 * 148.90864 * 20 19 18 23 23 N 1.31613 * 120.00210 * 349.19841 * 22 20 19 24 24 Si 1.86800 * 119.99774 * 169.19965 * 22 20 19 25 25 H 1.48500 * 109.47105 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.47076 * 300.00532 * 24 22 20 27 27 H 1.48503 * 109.46885 * 59.99885 * 24 22 20 28 28 C 1.46925 * 118.74200 * 306.63761 * 19 18 17 29 29 C 1.52759 * 109.00542 * 53.31405 * 28 19 18 30 30 H 1.08998 * 109.47291 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47225 * 299.96729 * 1 2 3 32 32 H 1.09006 * 109.47409 * 59.96824 * 1 2 3 33 33 H 0.97001 * 120.00126 * 240.03358 * 3 2 1 34 34 H 1.09005 * 109.22820 * 58.11463 * 8 6 4 35 35 H 1.09004 * 109.23414 * 177.48380 * 8 6 4 36 36 H 1.09000 * 109.24863 * 185.95859 * 9 8 6 37 37 H 1.08998 * 109.22132 * 66.52562 * 9 8 6 38 38 H 1.09007 * 109.83768 * 296.61272 * 10 9 8 39 39 H 1.08998 * 109.84516 * 175.64083 * 10 9 8 40 40 H 1.09005 * 110.48768 * 25.73291 * 13 11 10 41 41 H 1.09001 * 110.60256 * 263.14401 * 13 11 10 42 42 H 1.09002 * 110.34640 * 238.64850 * 14 13 11 43 43 H 1.09004 * 110.34933 * 116.37783 * 14 13 11 44 44 H 1.09000 * 110.60927 * 217.49285 * 15 14 13 45 45 H 1.08996 * 110.74353 * 94.58343 * 15 14 13 46 46 H 1.08999 * 109.49814 * 58.66677 * 17 2 1 47 47 H 1.08998 * 109.52025 * 298.57908 * 17 2 1 48 48 H 1.09003 * 109.58330 * 294.84766 * 18 17 2 49 49 H 1.08993 * 109.70132 * 174.49123 * 18 17 2 50 50 H 0.97002 * 119.99912 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.58768 * 173.14291 * 28 19 18 52 52 H 1.08994 * 109.58735 * 293.57149 * 28 19 18 53 53 H 1.09003 * 109.56800 * 185.54915 * 29 28 19 54 54 H 1.09003 * 109.38727 * 65.51770 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0177 1.3814 0.0000 4 6 1.6924 2.2110 1.0111 5 8 0.9961 1.8137 1.9213 6 6 2.1946 3.6318 1.0114 7 1 1.7521 4.1798 0.1795 8 6 3.7258 3.6424 0.8872 9 6 4.3697 2.9433 2.0838 10 6 3.8661 3.5523 3.4016 11 6 2.3466 3.4549 3.4019 12 1 2.0253 2.4195 3.2891 13 6 1.6842 4.0860 4.6315 14 6 0.3712 4.6998 4.0826 15 6 0.4105 4.4277 2.5553 16 7 1.8455 4.2782 2.2693 17 6 2.0398 -0.7208 -1.2502 18 6 3.5714 -0.6885 -1.2643 19 7 4.0678 -1.2488 0.0000 20 6 4.9757 -2.2740 -0.0001 21 1 4.9720 -2.9985 -0.8009 22 6 5.9007 -2.3818 1.0294 23 7 6.0498 -1.3941 1.8863 24 14 6.9339 -3.9289 1.1982 25 1 7.8384 -3.7948 2.3683 26 1 6.0426 -5.1006 1.3924 27 1 7.7426 -4.1208 -0.0325 28 6 3.5671 -0.6922 1.2642 29 6 2.0399 -0.7207 1.2500 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3634 0.5143 -0.8897 33 1 2.5749 1.6990 -0.7277 34 1 4.0153 3.1267 -0.0284 35 1 4.0753 4.6740 0.8433 36 1 5.4522 3.0564 2.0262 37 1 4.1175 1.8832 2.0583 38 1 4.1697 4.5972 3.4660 39 1 4.2725 2.9954 4.2458 40 1 2.3223 4.8635 5.0517 41 1 1.4658 3.3262 5.3819 42 1 0.3442 5.7721 4.2761 43 1 -0.4929 4.2108 4.5326 44 1 -0.0047 5.2717 2.0044 45 1 -0.1269 3.5110 2.3125 46 1 1.6572 -0.2207 -2.1399 47 1 1.6978 -1.7556 -1.2389 48 1 3.9142 0.3410 -1.3674 49 1 3.9437 -1.2829 -2.0985 50 1 6.6959 -1.4697 2.6059 51 1 3.9346 -1.2907 2.0978 52 1 3.9097 0.3369 1.3715 53 1 1.6571 -0.2207 2.1398 54 1 1.6973 -1.7554 1.2386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045584571.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:12 Heat of formation + Delta-G solvation = -21.371999 kcal Electronic energy + Delta-G solvation = -33042.966191 eV Core-core repulsion = 29207.251887 eV Total energy + Delta-G solvation = -3835.714304 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 335.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.29856 -40.33198 -38.31751 -36.12261 -35.96325 -33.72565 -33.28716 -32.14874 -31.59918 -30.01560 -29.07472 -28.23002 -25.94279 -24.99489 -23.90031 -23.00105 -22.58751 -22.08237 -21.59717 -20.66453 -20.04339 -18.76330 -17.73728 -16.99212 -16.85737 -16.54504 -16.22274 -16.01113 -15.72777 -15.56568 -15.19093 -14.92716 -14.91072 -14.76497 -14.66275 -14.15207 -13.98775 -13.72986 -13.38456 -13.25741 -13.20079 -13.14462 -12.90476 -12.79974 -12.59099 -12.58079 -12.44427 -12.30466 -12.15953 -12.09138 -11.94669 -11.78023 -11.60485 -11.39703 -11.35761 -11.28207 -11.21018 -11.04504 -10.77503 -10.48371 -9.81738 -9.04873 -8.55701 -7.83450 -5.33561 1.44886 1.46858 1.52914 1.72412 2.35854 2.50907 3.01464 3.31833 3.64237 3.71453 3.73814 3.78116 3.93816 4.02364 4.08431 4.13242 4.15412 4.19547 4.25677 4.41923 4.49372 4.51644 4.62473 4.68833 4.71261 4.77082 4.81515 4.84361 4.86496 4.90057 4.96887 4.97940 5.05003 5.05628 5.08518 5.09764 5.14315 5.18566 5.22268 5.27560 5.32351 5.34963 5.38094 5.40513 5.51826 5.55848 5.67186 5.76672 5.89956 5.98967 6.19276 6.42930 6.74010 7.19111 7.40440 7.90347 8.42216 9.20568 Molecular weight = 335.23amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.004427 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.544512 B = 6323.769152 C = 7310.909838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.188 3.812 3 N -0.702 5.702 4 C 0.491 3.509 5 O -0.560 6.560 6 C 0.067 3.933 7 H 0.129 0.871 8 C -0.092 4.092 9 C -0.127 4.127 10 C -0.097 4.097 11 C 0.038 3.962 12 H 0.064 0.936 13 C -0.112 4.112 14 C -0.111 4.111 15 C 0.033 3.967 16 N -0.492 5.492 17 C -0.125 4.125 18 C 0.142 3.858 19 N -0.606 5.606 20 C -0.264 4.264 21 H 0.064 0.936 22 C -0.045 4.045 23 N -0.928 5.928 24 Si 0.961 3.039 25 H -0.296 1.296 26 H -0.282 1.282 27 H -0.273 1.273 28 C 0.191 3.809 29 C -0.138 4.138 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.404 0.596 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.094 0.906 47 H 0.067 0.933 48 H 0.024 0.976 49 H 0.056 0.944 50 H 0.246 0.754 51 H 0.034 0.966 52 H 0.015 0.985 53 H 0.054 0.946 54 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.825 13.793 -3.099 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.102 3.898 3 N -0.354 5.354 4 C 0.278 3.722 5 O -0.440 6.440 6 C -0.046 4.046 7 H 0.147 0.853 8 C -0.130 4.130 9 C -0.164 4.164 10 C -0.135 4.135 11 C -0.070 4.070 12 H 0.082 0.918 13 C -0.151 4.151 14 C -0.149 4.149 15 C -0.095 4.095 16 N -0.214 5.214 17 C -0.164 4.164 18 C 0.017 3.983 19 N -0.329 5.329 20 C -0.395 4.395 21 H 0.081 0.919 22 C -0.241 4.241 23 N -0.574 5.574 24 Si 0.790 3.210 25 H -0.223 1.223 26 H -0.208 1.208 27 H -0.199 1.199 28 C 0.065 3.935 29 C -0.178 4.178 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.240 0.760 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.063 0.937 46 H 0.113 0.887 47 H 0.086 0.914 48 H 0.042 0.958 49 H 0.074 0.926 50 H 0.055 0.945 51 H 0.052 0.948 52 H 0.033 0.967 53 H 0.073 0.927 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.970 14.027 -2.411 17.970 hybrid contribution 0.850 -2.030 0.231 2.213 sum -10.120 11.998 -2.180 15.846 Atomic orbital electron populations 1.22075 0.93887 1.02152 1.02416 1.20112 0.93564 0.81007 0.95115 1.46212 1.52676 1.11329 1.25198 1.22128 0.79458 0.89357 0.81293 1.90509 1.39784 1.77943 1.35800 1.21900 0.97779 0.89083 0.95876 0.85319 1.21494 0.91091 1.02610 0.97835 1.21641 1.00062 0.99099 0.95622 1.21433 0.94241 1.01251 0.96533 1.22837 0.94776 0.97851 0.91526 0.91821 1.22085 0.97074 0.99764 0.96142 1.22440 0.96928 1.01505 0.93991 1.22989 0.88539 1.00862 0.97067 1.64331 1.13192 1.43341 1.00586 1.22210 0.97010 1.00675 0.96531 1.21041 0.92472 0.96326 0.88457 1.44168 1.48277 1.39565 1.00913 1.19434 1.07969 1.03084 1.08983 0.91879 1.25811 0.98613 0.99888 0.99738 1.70138 1.37200 1.31852 1.18211 0.85444 0.78516 0.80026 0.77035 1.22276 1.20819 1.19911 1.20370 0.88942 0.95631 0.88556 1.22296 0.98473 0.98617 0.98365 0.91976 0.92611 0.91271 0.75972 0.90939 0.88669 0.92359 0.94432 0.90131 0.93022 0.90475 0.92334 0.89843 0.91557 0.89376 0.93734 0.88742 0.91449 0.95848 0.92585 0.94458 0.94761 0.96668 0.92714 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.13 8.40 71.98 0.60 -3.52 16 2 C 0.19 5.97 0.66 3.63 0.00 5.98 16 3 N -0.70 -20.15 3.97 -422.81 -1.68 -21.83 16 4 C 0.49 14.63 5.06 87.66 0.44 15.07 16 5 O -0.56 -19.83 7.76 -3.04 -0.02 -19.85 16 6 C 0.07 1.62 3.09 44.61 0.14 1.76 16 7 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 8 C -0.09 -2.28 5.45 30.74 0.17 -2.11 16 9 C -0.13 -4.03 5.66 30.75 0.17 -3.86 16 10 C -0.10 -2.82 5.64 30.57 0.17 -2.64 16 11 C 0.04 1.10 2.18 44.40 0.10 1.20 16 12 H 0.06 2.37 4.88 -2.43 -0.01 2.36 16 13 C -0.11 -2.76 6.65 31.36 0.21 -2.55 16 14 C -0.11 -2.35 7.05 32.02 0.23 -2.12 16 15 C 0.03 0.78 6.41 87.02 0.56 1.33 16 16 N -0.49 -12.40 4.81 -843.38 -4.06 -16.46 16 17 C -0.12 -3.75 4.96 30.68 0.15 -3.60 16 18 C 0.14 5.36 6.25 86.37 0.54 5.90 16 19 N -0.61 -29.46 2.99 -699.93 -2.09 -31.55 16 20 C -0.26 -14.38 9.58 84.03 0.81 -13.57 16 21 H 0.06 3.34 7.85 -2.91 -0.02 3.32 16 22 C -0.04 -2.49 5.05 84.86 0.43 -2.06 16 23 N -0.93 -54.92 11.06 21.65 0.24 -54.68 16 24 Si 0.96 45.19 29.57 68.60 2.03 47.22 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 27 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 28 C 0.19 9.32 4.97 86.22 0.43 9.75 16 29 C -0.14 -5.66 4.65 30.53 0.14 -5.51 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.78 6.17 -2.39 -0.01 1.77 16 32 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.40 10.18 6.39 -92.71 -0.59 9.59 16 34 H 0.07 1.73 7.27 -2.38 -0.02 1.71 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.52 4.99 -2.39 -0.01 1.51 16 38 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 1.69 8.00 -2.38 -0.02 1.67 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.04 1.27 5.91 -2.39 -0.01 1.25 16 46 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.02 0.84 6.94 -2.39 -0.02 0.83 16 49 H 0.06 2.08 7.93 -2.39 -0.02 2.06 16 50 H 0.25 14.34 8.31 -92.71 -0.77 13.56 16 51 H 0.03 1.99 6.11 -2.39 -0.01 1.97 16 52 H 0.02 0.78 5.12 -2.39 -0.01 0.77 16 53 H 0.05 2.40 6.20 -2.39 -0.01 2.38 16 54 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -65.10 379.23 0.00 -65.10 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.30 Total: 32.62 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.29 Total: -0.57 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -7.59 Total: -124.52 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.02 Total: -19.85 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -65.10 0.00 -65.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045584571.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.730 kcal (2) G-P(sol) polarization free energy of solvation -65.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds